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cassj's library [217 articles]

Recent papers added to cassj's library ordered by importance.
  • EXPLORATION, NORMALIZATION, AND GENOTYPE CALLS OF HIGH DENSITY OLIGONUCLEOTIDE SNP ARRAY DATA
    Johns Hopkins University, Dept. of Biostatistics Working Papers., Vol. 111
    by Carvalho
    posted to no-tag by cassj on 2006-03-17 10:20:57 as ***** along with 696 people and 131 groups fernand0 dperkel egh jyuh samth sora florine ladygoat hopm hellige parmentierf ssn mortimer tinkha V plaugg ansobol mjaz berthelemy eldan pdlug zephoria carloscabanillas Janos bkliethermes nazareno elsantosneto januadiaboli yaroslavvb jurijmlotman geomblog srl bigga treycausey CSG mcphee chandrashekar denns matzke sherrivokey sona lijil hlovise coolger incites bigmagpie alicetiara yorgos johannsen cavlec smbrower viller jenmy mlzafron tymmail sedging davidr macowell eimaj42jdp Flit BenWillems agallet hawesie sngourlay jolilius rmagf acer ville garyfeng danifazzio willwade gantlord melanieramage mgregg cwb neteler carneym crispinb rdlong lillekatt davemack agarza carsonr imcdnzl tjimenez Tolik lna dmikurube szityu michmill P2324548 jpbenda Vaccine tadm mkwalker anar grzegorz japple planetoid okarsligil stormybriggs UWerplab nbr inbetweener pafmon stina pgastrein xiruela kutabar jfr xamde kliether mleis jshahin cmunson lfriedl sharonhoward ccots terraces czlamer brent_lance subhradeep jjray Jellyfish cmmorel bayesian benavides ghsalazar manuelpq sekulerlab jmaryott kristina chad_davis Ayest thens austin RMGraze e2holmes JAShapiro contradictoryben lrodero jamesfournie nybon hawkestein diegolino_veneziano rvosa Schmidtc lyongu ricmilne KarinaFigueroa jfmenudet cdmilligan great_apes brthz juliajumeau gloinf billwolff mrkrause halsnalle pintman yish mkcerusky cyph3r idm smithco ruudvanleeuwen BarrosH aelva harshpshah earnoux princessbritty Laki kupopo ryang eustatic daqing balicea stain matts ram frankgrimes Pfaff9 locatellimp seawidget ianli kate_waxlyrical rherring ThomasEtEckert cliona shaun gregnishihara harmonjt Happybene jklugman mwyarbro rburnett prabakaran nperrin tystl gugek NicolasNeubauer gytisc Nele pedagogicapprentice dlouzeck phillipkent emerson rafamayo arichar6 pasion sadsackmac gbae redcourgette sunilbajpai JJNonesuch heintz BuckeyePhysicist bretblosser charlesijones term duckysherwood madhadron ypeter cmm agraham yijisoo jberro peaksun balabu djsaab crumj garypearce rinelk plashkes PaulB charlescearl malkav30 p2p-sec langec tuaba os252 JonathanFeinberg jingliu dvoigt hywel tshr dgront isorhiza foistudy jenine donade kmcolo fisherp voiklis insilico fitzgeraldsteele junoda sumeetonweb familydoc craigtalbert dmitri83 dmboyer martint RalphPutnam atsu-kan hlwoodcock reta gogabr smmurphy rafabravo dabhishe JennaW hisashim cjones chuggins Sulpicus ranb alikocho hiromark gane5h l-alex rdiaz pilho danzinde ueberweise wangsd echinotrix ak Odi bezbozhnik todchambers perceptron wasteland93 yizheng stephane-jean mahlow mbaric mtr anon_pl dir289 lanubile fcalefato dpeeler QFRMC xwenlong johncumbers kgronemyer keitokita hkl pervane mpennell kedmond mfisk brusilovsky gregflanders hgamboa pgeymueller last5laps jbrown nathanielvirgo rwm101 ChristianGraf marohn davetown101 barbz79it naturecure edgarbc muellerkind fugitive joshuashen kndiaye aviad_work EsepBib crusher lucbelanger lauragonzalez Manhal gagliol ashandanj lns cblock trungdong lechristophe ealloza s-adachi rsabouni dhingra corcoted Shii vrv fmiyamae livingthingdan kaz229 Haggan knowlengr aniak kungcc krzywy tg Rootfruit ricklillie gracev lrsantos babyone eenauk long pereicoco lieselot yeqiwei amcmorl redelings nojhan mkharito rocarvaj stoev tdpessem briansludwig ttsutsumi wenniehu elsiatcase perhapstoopink atbrew fsteeg digitaldust CDivin whshen andersok fpalm gkvas brembs ragha mgran thomaswuebben justaubrey macfreek lilalia azygmunt ddineen miguelbezerra jdiggans sjgaller huminfly thjt shenshei erikwdavis jsvoboda ceegrs2 jared jijkoun slafont mdifranc GregorSuhr jmurdoch mattlee Repton jvrantwijk ible fruminator mamadoudiao mkowa fellow tzmtzm samjlord abbyworld aozkan giorgis fluomouse Tellima RiccardoAlbertoni annmarie37 ciriol sstoerge gengh goingsomewhere ruddyconsult MichaelGaebler nco71 Vezhnick fabianhemmert shangnan Fahland lossius adriancooke baikanamako elisaformist jsanpedro oceanflynn imaginaryunit bobturner grahamc nascardaughter shariffdinah ibschwartz srfairclough joepickrell bouchard islandrru hohkhkh1 alchemyst mlewcio irwink henriksdal cychang padraic trshepherd tarjeiha josemblazquez pitzelberger hukkinen toppi sjc garancher_gougeon_reyotero nmaisonneuve powell digamberjuwekar cmcleod grieth isys1186 aartaki polyparadigm rodney portalqm tkravitz bangb cdm jeanfou CareyNadell teh zwang shivakmr prerona michaelmampaey mick39 dagmar gi0rgi0ne bellia akom kevin7 friveroll khm zetetic karipuf leechuck freddan hp2oo1 jenda_z ngrandy andreacapocci ghunter Maderlock shizhao dayadvham monientiedt rebeccamancy calamar c-gobert baniel wongmld jborn dmschneid tale chrisatcite mloewer hanxiansheng rlai jasonbobe ggorjan zeppe AlisonBabeu eprzekwa J_Raff fornstar yodha Akimasa technical Scis0000002 oilpalm spacely j0nes IanBrown TCgroup RalfMitschke ingedwar Oktoplus stonest kaniko cwr jladell rbmoura Leize adjih carpi omidf2 msampson olaf markusd paulschlesinger qwermish librain pkrrules nellapower thehajime PeterRabbit paulvb cvq peefeeyatko kinestetika lynleypage truongducthang metaspencer dodger042 jpassoth krokicki tibbitts brianlimyl vogmae doylem nkishan joni2am hayko gjhuang ashko buggle bemike cvarnam umurthy21 andregermanoregert Katje midshipman tgyork ivanois toivotuo jnz snyder84 idonaldson dandaman awc psique Thaverkamp mtugrul buchgeher fairy mebiel lectorespa bennettn waszak forestier claudiotubertini acastaner hkreysa AnneB christiankissig GimpyBee sgclendenon paj prdrieze cortex rschulz aklassen kenneth1ny nschaeff japarejo andreacastelletti schocol scarcelan hillarpoldmaa kcrawlik ipora yavanna Grobi s-fujii kdesmond bjbecerra LTrottier ziggy talkingpoints linxiang mllee monkare scottkb pantxorama petergun6666 iantunbridge farzanehs murb wartaalman christian_librarian jago jsenn mpisarenco blackm0k applebyb bluecricket mrosenki carterb BrianTomasik mfloris adamsi yungyuc schulz iup massimocencini natasjadenouden nickpitman genericg dmmarinlo jakobl nikko kericson makbot squirmelia ezaydens adenkabe ThomasKluge pdessus Neeperando hrwiltse vrich ranger amydash taenneken gvandyk1 giolakat sarahmccrum melody Corbasson skumagai nlauzier Langster mirweis Stepstep abdulpur tbolt427 jeanbean Axis ablam CGREL CMU-HCII NU-PRL UoY-CS-AIG Blog_and_Wiki_Research CompetitionLawAndPolicy Tectonics_and_geomorphology NeuronDynamics Context-driven-testers ReadingLab political_science_students kdl distance remote TUCS-ES_Lab Quantum_physics_Education WAND sims_phd_cohort_2005 ASR digital_youth Librarians biodiversity_conservation Global_biodiversity_model InformationRetrieval Wikipedia AssistiveTechnology Bioinformatics mathgamespatterns MACLab folksonomy Neuroscience VisionLab Personal-Information-Management CMS Stoc_Proc_Ecology_WG LanguageAndBrain BrainTheory dtl hdm id vds-arg ALF DPR EvolutionaryComputation STS infovis 2ndFloor fammed-publichealth AI eni Biofluid FAB-lab DSS NeuralNetworks mobilecomputing tmig_psycho RETA SITCRC CDG cliamte_change folk_epistemology instaar_graduate_students Projet_ENSIMAG climate_change BUiGEM social_navigation Macroelectronics ARC04 The_Truants QFRMC_ConsumerCredit Plant-Tissue-Simulation METRIK Metaheuristics Boydian_Society eLearning BioinfoCIPF Nutritional_Polymorphisms CaltechCMP SEGAL Optimization location SNE kickOffTUG-Robocup NanoMechanicsofMetals_MPIMF Georouting Child_Support Software-Architecture ParkinsonLab_at_MaRS moernerlab ilps livingthing HUCO-627-W07 elearning_research PLE-TEL-project Femtochemistry_LMU ediadem ENSSIBVeille memoir ILK ColDyn ImatiGESemantic AGH-IISG PRC_SEA TCD-NDS102-Project CAOS Adaptive-Web Microbial-Ecology Flexible_ICT-supported_learning Social_Software_ws_07-08 DialogueResearchGroup AM-VideoGames-Gender dIEMoSIRIS microbiology_nijmegen Europe_GPE ZnO_project ADMiRes Health_Sciences_Librarians feminist_technoscience Desgin-by-Contract MITCCI Kopelman_Group DarkMarkGroup VivesMinions PostureMobility compneur Philosophy of physics PsychStatsBanter Video based Animation for People Knowledge_Economy_Reform Global_patent_pools Social Informatics @ IU
  • Regulation of X-Chromosome Counting by Tsix and Xite Sequences
    Science, Vol. 309, No. 5735. (29 July 2005), pp. 768-771.
    by Jeannie T Lee
    posted to antisense tsix x-chromosome by cassj on 2005-08-01 15:15:51 as *****
  • Optimization of primer design for the detection of variable genomic lesions in cancer
    Bioinformatics, Vol. 23, No. 21. (1 November 2007), pp. 2807-2815.
    by Ali Bashir, Yu-Tsueng Liu, Benjamin J Raphael, Dennis Carson, Vineet Bafna
    posted to design primer by cassj on 2007-11-17 21:06:21 as **** along with 1 person vanyapel
  • Partition function and base pairing probabilities of RNA heterodimers
    Algorithms for Molecular Biology, Vol. 1 (16 March 2006), 3.
    by Stephan H Bernhart, Hakim Tafer, Ulrike Mückstein, Christoph Flamm, Peter F Stadler, Ivo L Hofacker
    posted to vienna rna-structure rna-folding partition-function by cassj on 2007-02-01 02:25:27 as **** along with 1 person ilh
  • ChroCoLoc: an application for calculating the probability of co-localization of microarray gene expression
    Bioinformatics, Vol. 22, No. 6. (15 March 2006), pp. 765-767.
    by Jonathon Blake, Christian Schwager, Misha Kapushesky, Alvis Brazma
    posted to alvis chromosome co-localization microarray misha by cassj on 2006-03-17 10:15:31 as **** along with 1 person bootsy
  • Modulation of microRNA processing and expression through RNA editing by ADAR deaminases
    Nature Structural & Molecular Biology, Vol. 13, No. 1. (20 December 2005), pp. 13-21.
    by Weidong Yang, Thimmaiah P Chendrimada, Qingde Wang, Miyoko Higuchi, Peter H Seeburg, Ramin Shiekhattar, Kazuko Nishikura
    posted to adar mirna by cassj on 2006-01-16 18:33:44 as **** along with 2 people and 2 groups marcius mtagaya BioinfoCIPF SGU-CIPF
  • Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function
    Trends in Genetics, Vol. 22, No. 1. (January 2006), pp. 1-5.
    by Ken C Pang, Martin C Frith, John S Mattick
    posted to ncrna by cassj on 2006-01-16 17:46:18 as **** along with 6 people and 5 groups marcius alexg eckart_bindewald andersbj dchughes mtagaya microRNA G4ID BioinfoCIPF SGU-CIPF Genetics-of-Gambling
  • An Abundance of RNA Regulators.
    Annu Rev Biochem (19 November 2004)
    by Storz, Karen M M Wassarman
    posted to regulation rna transcriptome by cassj on 2005-03-30 02:08:00 as ****
  • Strengths and weaknesses of EST-based prediction of tissue-specific alternative splicing.
    BMC Genomics, Vol. 5, No. 1. (28 September 2004)
    by S Gupta, D Zink, B Korn, M Vingron, SA Haas
    posted to alternative est prediction splicing by cassj on 2005-03-24 08:17:25 as **** along with 1 person and 1 group greg spliceml
  • Dissecting the human spliceosome through bioinformatics and proteomics approaches.
    J Bioinform Comput Biol, Vol. 1, No. 4. (January 2004), pp. 743-750.
    by GM Peres Lopes, SJ de Souza
    posted to spliceosome by cassj on 2005-03-24 08:16:33 as **** along with 1 person and 1 group greg spliceml
  • Neurogenin and NeuroD direct transcriptional targets and their regulatory enhancers
    The EMBO Journal
    by Seongjin Seo, Jong-Won Lim, Dhananjay Yellajoshyula, Li-Wei Chang, Kristen L Kroll
    posted to bhlh neurod neurogenesis neurogenin targets transcriptional by cassj on 2007-12-03 13:55:44 as ***
  • Stalled polymerases and transcriptional regulation
    Nature Genetics, Vol. 39, No. 12., pp. 1421-1422.
    by John W Tamkun
    posted to eukaryotic mrna polii polymerase stalled transcription by cassj on 2007-12-03 13:36:38 as *** along with 4 people dchughes cjeans emptyhb rschulz
  • Inferring activity changes of transcription factors by binding association with sorted expression profiles
    BMC Bioinformatics, Vol. 8 (16 November 2007), 452.
    by Chao Cheng, Xiting Yan, Fengzhu Sun, Lei M Li
    posted to binding expression factor microarray profile target transcription by cassj on 2007-11-17 21:21:41 as *** along with 2 people ihpark vinithepooh
  • Clustal W and Clustal X version 2.0
    Bioinformatics, Vol. 23, No. 21. (1 November 2007), pp. 2947-2948.
    by MA Larkin, G Blackshields, NP Brown, R Chenna, PA Mcgettigan, H Mcwilliam, F Valentin, IM Wallace, A Wilm, R Lopez, JD Thompson, TJ Gibson, DG Higgins
    posted to alignment clustalw by cassj on 2007-11-17 21:17:43 as *** along with 4 people alanrw bmaust lisa1 ryanraaum
  • OSCAR: One-class SVM for Accurate Recognition of Cis-elements
    Bioinformatics (5 October 2007), btm473.
    by Bo Jiang, Michael Q Zhang, Xuegong Zhang
    posted to binding factor oscar prediction recognition site svm transcription by cassj on 2007-11-17 21:09:55 as *** along with 6 people and 1 group isimpson tmmurali chad_davis cabbagezs maximilianh idonaldson csb_journal_club_public
  • Construction, Visualisation, and Clustering of Transcription Networks from Microarray Expression Data
    PLoS Computational Biology, Vol. 3, No. 10. (1 October 2007), e206.
    by Tom C Freeman, Leon Goldovsky, Markus Brosch, Stijn van Dongen, Pierre Mazière, Russell J Grocock, Shiri Freilich, Janet Thornton, Anton J Enright
    posted to expression microarray network rna transcription by cassj on 2007-11-15 10:47:37 as *** along with 2 people brant cjeans
  • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias.
    Bioinformatics, Vol. 19, No. 2. (22 January 2003), pp. 185-193.
    by BM Bolstad, RA Irizarry, M Astrand, TP Speed
    posted to microarray normalization by cassj on 2006-10-02 14:43:36 as *** along with 11 people vertikalist gjuggler bertelsen Dax42 pcahan1 chad_davis RMGraze filmsternchen qmwwallace joepickrell ghattem
  • A new summarization method for affymetrix probe level data
    Bioinformatics, Vol. 22, No. 8. (15 April 2006), pp. 943-949.
    by Sepp Hochreiter, Djork-Arne Clevert, Klaus Obermayer
    posted to affy probesummary by cassj on 2006-04-19 18:46:23 as *** along with 1 person ghattem
  • Bioinformatic analysis of exon repetition, exon scrambling and trans-splicing in humans
    Bioinformatics, Vol. 22, No. 6. (15 March 2006), pp. 692-698.
    by Xiang Shao, Valery Shepelev, Alexei Fedorov
    posted to exon splicing by cassj on 2006-03-17 10:06:05 as ***
  • Ensembl 2006
    Nucleic Acid Research, Vol. 34, No. Database. (1 January 2006), pp. D556-D561.
    by E Birney
    posted to ensembl genome transcriptome by cassj on 2006-01-30 15:25:03 as ***
  • The role of alternative translation start sites in the generation of human protein diversity
    Molecular Genetics and Genomics, Vol. 273, No. 6. (July 2005), pp. 491-496.
    by Alex V Kochetov, Akinori Sarai, Igor B Rogozin, Vladimir K Shumny, Nikolay A Kolchanov
    posted to alternative diversity protein translation by cassj on 2005-08-01 15:35:41 as *** along with 1 person dayjm
  • Combined Evidence Annotation of Transposable Elements in Genome Sequences
    PLOS Computational Biology, Vol. 1, e22.
    by H Quesneville, CM Bergman, O Andrieu, D Autard, D Nouaud, M Ashburner, D Anxolabehere
    posted to transcriptome transcriptomics transposons by cassj on 2005-08-01 11:43:04 as ***
  • A high frequency of overlapping gene expression in compacted eukaryotic genomes
    PNAS, Vol. 0501321102
    by BAP Williams, CH Slamovits, NJ Patron, NM Fast, PJ Keeling
    posted to compact eukaryote genomic-organization transcriptome transcriptomics by cassj on 2005-08-01 11:36:21 as ***
  • Genomics: The amazing complexity of the human transcriptome
    European Journal of Human Genetics, Vol. aop, No. current.
    by Martin C Frith, Michael Pheasant, John S Mattick, John S Mattick
    posted to review transcriptome transcriptomics by cassj on 2005-08-01 11:28:09 as *** along with 1 person alexg
  • Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi
    Science, Vol. 297, No. 5588. (13 September 2002), pp. 1833-1837.
    by Thomas A Volpe, Catherine Kidner, Ira M Hall, Grace Teng, Shiv IS Grewal, Robert A Martienssen
    posted to rnai silencing transcription by cassj on 2005-03-29 23:20:38 as ***
  • Antisense RNA in imprinting: spreading silence through Air
    Trends in Genetics, Vol. 18, No. 9. (01 September 2002), pp. 434-437.
    by Claire Rougeulle, Edith Heard
    posted to antisense imprinting nat transcription by cassj on 2005-03-29 22:44:41 as ***
  • Widespread occurrence of antisense transcription in the human genome
    Nature Biotechnology, Vol. 21, No. 4. (April 2003), pp. 379-386.
    by Rodrigo Yelin, Dvir Dahary, Rotem Sorek, Erez Y Levanon, Orly Goldstein, Avi Shoshan, Alex Diber, Sharon Biton, Yael Tamir, a Khosravi
    posted to antisense human transcription by cassj on 2005-03-29 22:34:38 as ***
  • Do natural antisense transcripts make sense in eukaryotes?
    Gene, Vol. 211, No. 1. (28 April 1998), pp. 1-9.
    by Christine Vanhee-Brossollet, Catherine Vaquero
    posted to antisense eukaryote nat transcript by cassj on 2005-03-29 22:23:25 as ***
  • Database of mRNA gene expression profiles of multiple human organs.
    Genome Res, Vol. 15, No. 3. (March 2005), pp. 443-450.
    by CG Son, S Bilke, S Davis, BT Greer, JS Wei, CC Whiteford, QR Chen, N Cenacchi, J Khan
    posted to bioinformatics database expression mrna by cassj on 2005-03-24 08:06:36 as *** along with 3 people JoannaScott BioGeek tmmurali
  • Tails of Intrigue: Phosphorylation of RNA Polymerase II Mediates Histone Methylation
    Cell, Vol. 113, No. 4. (16 May 2003), pp. 429-432.
    by Michael Hampsey, Danny Reinberg
    posted to dna-packing dna-structure histone transcription by cassj on 2005-03-15 16:05:48 as ***
  • The Nucleosome: From Genomic Organization to Genomic Regulation
    Cell, Vol. 116, No. 2. (23 January 2004), pp. 259-272.
    by Sepideh Khorasanizadeh
    posted to dna-structure genomic-organization genomic-regulation nucleosome review transcription by cassj on 2005-03-15 15:57:01 as ***
  • Regulation of RNA Polymerase II Transcription by Sequence-Specific DNA Binding Factors
    Cell, Vol. 116, No. 2. (23 January 2004), pp. 247-257.
    by James T Kadonaga
    posted to eukaryotic review transcription by cassj on 2005-03-15 15:55:12 as ***
  • High-throughput mapping of a dynamic signaling network in mammalian cells.
    Science, Vol. 307, No. 5715. (11 March 2005), pp. 1621-1625.
    by M Barrios-Rodiles, KR Brown, B Ozdamar, R Bose, Z Liu, RS Donovan, F Shinjo, Y Liu, J Dembowy, IW Taylor, V Luga, N Przulj, M Robinson, H Suzuki, Y Hayashizaki, I Jurisica, JL Wrana
    posted to bioinformatics mammalian network signalling by cassj on 2005-03-15 13:39:46 as *** along with 3 people and 1 group hubcite grahamc maralena ParkinsonLab_at_MaRS
  • GSEA-P: A desktop application for Gene Set Enrichment Analysis
    Bioinformatics (20 July 2007), btm369.
    by Aravind Subramanian, Heidi Kuehn, Joshua Gould, Pablo Tamayo, Jill P Mesirov
    posted to go gsea microarray by cassj on 2007-12-03 13:17:41 as ** along with 8 people and 1 group heliopais Eugene jyuh ealloza schuylrp barriot waszak dmontaner BioinfoCIPF
  • Predicting RNA secondary structure by the comparative approach: how to select the homologous sequences
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Stefan Engelen, Fariza Tahi
    posted to folding prediction rna structure by cassj on 2007-12-03 13:15:56 as ** along with 1 person nklee
  • Where do you know what you know? The representation of semantic knowledge in the human brain
    Nature Reviews Neuroscience, Vol. 8, No. 12., pp. 976-987.
    by Karalyn Patterson, Peter J Nestor, Timothy T Rogers
    posted to memory neuroscience review semantic by cassj on 2007-11-23 10:17:47 as ** along with 3 people andrefmsmith briordan suizan
  • Producing primate embryonic stem cells by somatic cell nuclear transfer
    Nature (14 November 2007)
    by J Byrne, D Pedersen, L Clepper, M Nelson, W Sanger, S Gokhale, D Wolf, S Mitalipov
    posted to cell es nuclear primate stem transfer by cassj on 2007-11-23 10:12:04 as ** along with 3 people frampton bbiscaro dvaidpz
  • Whole genome amplification on poly(dimethylsiloxane) microchip array
    Analytical Biochemistry, Vol. 372, No. 1. (1 January 2008), pp. 128-130.
    by Lin Chen, Andreas Manz, Philip J Day
    posted to amplification array genome microchip whole by cassj on 2007-11-21 12:53:00 as **
  • I/NI-calls for the exclusion of non-informative genes: a highly effective filtering tool for microarray data
    Bioinformatics, Vol. 23, No. 21. (1 November 2007), pp. 2897-2902.
    by Willem Talloen, Djork-Arne Clevert, Sepp Hochreiter, Dhammika Amaratunga, Luc Bijnens, Stefan Kass, Hinrich W Gohlmann
    posted to calls filtering microarray non-informative pa by cassj on 2007-11-19 10:06:25 as ** along with 1 person aviad_work
  • Systematic order dependent effect in expression values, variance, detection calls and differential expression in Affymetrix GeneChips(R).
    Bioinformatics (25 September 2007)
    by Kathe E E Bjork, Karen Kafadar
    posted to affy analysis mas5 microarray rma by cassj on 2007-11-17 21:12:21 as ** along with 1 person ghattem
  • Evolutionary Models for Formation of Network Motifs and Modularity in the Saccharomyces Transcription Factor Network
    PLoS Computational Biology, Vol. 3, No. 10. (1 October 2007), e198.
    by Jonathan J Ward, Janet M Thornton
    posted to no-tag by cassj on 2007-11-15 10:46:09 as ** along with 4 people balicea cjeans vsree007 kristen
  • Fast Pairwise Structural RNA Alignments by Pruning of the Dynamical Programming Matrix
    PLoS Computational Biology, Vol. 3, No. 10. (1 October 2007), e193.
    by Jakob H Havgaard, Elfar Torarinsson, Jan Gorodkin
    posted to dynamic_programming foldalign rna rna_structure by cassj on 2007-11-15 10:44:22 as ** along with 1 person cjeans
  • Getting started in tiling microarray analysis.
    PLoS Comput Biol, Vol. 3, No. 10. (26 October 2007), pp. 1842-1844.
    by XS Liu
    posted to array review tiling by cassj on 2007-11-15 10:39:11 as ** along with 4 people jfr cabbagezs waszak yevishere
  • Multiple sequence alignments of partially coding nucleic acid sequences
    BMC Bioinformatics, Vol. 6 (July 2005), 160.
    by RR Stocsits, IL Hofacker, C Fried, PF Stadler
    posted to sequence_alignment by cassj on 2005-08-01 11:26:08 as **
  • Integrating mRNA processing with transcription.
    Cell, Vol. 108, No. 4. (22 February 2002), pp. 501-512.
    by NJ Proudfoot, A Furger, MJ Dye
    posted to rnapolii transcription_termination transcriptomics_review by cassj on 2005-05-04 12:25:44 as **
  • Terminating transcription in eukaryotes: lessons learned from RNA polymerase I.
    Trends Biochem Sci, Vol. 22, No. 12. (December 1997), pp. 473-477.
    by RH Reeder, WH Lang
    posted to rnapoli transcription_termination transcriptomics_review by cassj on 2005-05-04 12:22:31 as **