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	Amino acid size, charge, hydropathy indices and matrices for protein structure analysis. [My Copy] Theoretical biology & medical modelling, Vol. 3 (22 March 2006), 15. by J. C. Biro posted to aa physicochemical substitution-table by cat_worth on 2008-06-09 14:39:56 as along with 1 person VGreiff
	Structural impact of the E113Q counterion mutation on the activation and deactivation pathways of the G protein-coupled receptor rhodopsin [My Copy] Journal of Molecular Biology, Vol. In Press, Accepted Manuscript by Jörg Standfuss, Ekaterina Zaitseva, Mohana Mahalingam, Reiner Vogel posted to activated cam gpcr membrane_proteins by cat_worth on 2008-06-02 11:03:27 as
	Efficacy at G-protein-coupled receptors. [My Copy] Nature reviews. Drug discovery, Vol. 1, No. 2. (February 2002), pp. 103-110. by T. Kenakin posted to gpcr by cat_worth on 2008-05-21 14:19:54 as along with 1 person IrinaMoreira
	X-ray crystallographic studies for ligand-protein interaction changes in rhodopsin. [My Copy] Biochemical Society transactions, Vol. 32, No. Pt 5. (November 2004), pp. 738-741. by T. Okada posted to gpcr ligand xtal_structure by cat_worth on 2008-05-21 14:14:48 as
	Membrane proteins: molecular dynamics simulations [My Copy] Current Opinion in Structural Biology, Vol. In Press, Corrected Proof by Erik Lindahl, Mark S. P. Sansom posted to membrane_proteins mol_dynamics by cat_worth on 2008-05-21 14:06:55 as along with 5 people and 1 group oteri choonpeng vahmurk jmccammon rok McCammon
	The Pros and Cons of Predicting Protein Contact Maps [My Copy] Protein Structure Prediction (2008), pp. 199-217. by Lisa Bartoli, Emidio Capriotti, Piero Fariselli, Pier L. Martelli, Rita Casadio posted to contact_map by cat_worth on 2008-05-21 14:05:36 as
	Constitutively Signaling G-Protein-Coupled Receptors and Human Disease [My Copy] Trends in Endocrinology and Metabolism, Vol. 9, No. 1. ( 1998), pp. 27-31. by Leandros Arvanitakis, Elizabeth Geras-Raaka, Marvin C. Gershengorn posted to cam disease-associated gpcr by cat_worth on 2008-05-21 13:57:56 as
	G protein-coupled receptor pharmacogenetics. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 448 (2008), pp. 139-185. by M. D. Thompson, K. A. Siminoivitch, D. E. Cole posted to gpcr pharmacogenetics by cat_worth on 2008-05-21 13:55:15 as
	The protein folding problem: when will it be solved? [My Copy] Curr Opin Struct Biol (13 June 2007) by Ken A A. Dill, S Banu B. Ozkan, Thomas R R. Weikl, John D D. Chodera, Vincent A A. Voelz posted to folding by cat_worth on 2008-02-19 16:26:17 as along with 8 people flbarroso onufriev wouterboomsma cactus Jporci cdeane kalicuta sebk
	Evolutionary transitions in protein fold space [My Copy] Current Opinion in Structural Biology In Nucleic acids / Sequences and topology, Vol. 17, No. 3. (June 2007), pp. 354-361. by W. Taylor posted to folding by cat_worth on 2008-02-19 16:26:14 as along with 4 people dfdong cactus Jporci cdeane
	Energetics of Protein Folding [My Copy] Journal of Molecular Biology, Vol. 371, No. 2. (10 August 2007), pp. 283-301. by Robert L. Baldwin posted to folding by cat_worth on 2008-02-19 16:26:11 as along with 6 people melo_mcr flbarroso higueruelo mijam yarikson choonpeng
	The nature of the transition state ensemble and the mechanisms of protein folding: A review [My Copy] Archives of Biochemistry and Biophysics In Highlight Issue: Protein Folding, Vol. 469, No. 1. (1 January 2008), pp. 34-45. by Catherine A. Royer posted to folding by cat_worth on 2008-02-19 16:24:05 as
	Thermodynamics and Folding Kinetics Analysis of the SH3 Domain form Discrete Molecular Dynamics [My Copy] Journal of Molecular Biology, Vol. 318, No. 3. (3 May 2002), pp. 863-876. by Jose M. Borreguero, Nikolay V. Dokholyan, Sergey V. Buldyrev, Eugene I. Shakhnovich, Eugene posted to folding hydrogen_bonding_networks by cat_worth on 2007-11-09 12:03:47 as
	Thermodynamics of Partly Folded Intermediates in Proteins - Annual Review of Biophysics and Biomolecular Structure, 24(1):141 - First Page Image [My Copy] by E. Freire posted to folding hydrogen_bonding by cat_worth on 2007-11-09 10:55:44 as
	Statistical sequence analyses of G-protein-coupled receptors: Structural and functional characteristics viewed with periodicities of entropy, hydrophobicity, and volume [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 56, No. 4. (2004), pp. 650-660. by Takashi Imai, Norihisa Fujita posted to entropy gpcr by cat_worth on 2007-10-29 11:53:48 as
	Relationship between local structural entropy and protein thermostabilty [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 57, No. 4. (2004), pp. 684-691. by Chen-Hsiung Chan, Han-Kuen Liang, Nai-Wan Hsiao, Ming-Tat Ko, Ping-Chiang Lyu, Jenn-Kang Hwang posted to entropy stability by cat_worth on 2007-10-29 11:51:45 as
	Computation of conformational entropy from protein sequences using the machine-learning method - Application to the study of the relationship between structural conservation and local structural stability [My Copy] Proteins: Structure, Function, and Genetics, Vol. 59, No. 4. (12 April 2005), pp. 802-809. by Shao-Wei Huang, Jenn-Kang Hwang posted to entropy sequence-based stability by cat_worth on 2007-10-29 11:50:36 as along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
	Protein design simulations suggest that side-chain conformational entropy is not a strong determinant of amino acid environmental preferences. [My Copy] Proteins, Vol. 62, No. 3. (15 March 2006), pp. 739-748. by X. Hu, B. Kuhlman posted to entropy structure-based by cat_worth on 2007-10-29 11:45:13 as along with 3 people Lombardo_7 apaydin msuarezdiez
	A two-entropies analysis to identify functional positions in the transmembrane region of class A G protein-coupled receptors [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 63, No. 4. (1 June 2006), pp. 1018-1030. by Kai Ye, Eric-Wubbo M. Lameijer, Margot W. Beukers, Adriaan P. Ijzerman posted to entropy function-prediction gpcr by cat_worth on 2007-10-29 11:42:49 as along with 2 people and 1 group xdeupi cen4ik LabCompMed
	Critical evaluation of methods to incorporate entropy loss upon binding in high-throughput docking. [My Copy] Proteins (26 October 2006) by Sumeet Salaniwal, Eric S S. Manas, Juan C C. Alvarez, Rayomand J J. Unwalla posted to entropy protein-interactions by cat_worth on 2007-10-29 11:41:33 as along with 1 person BragilMassoud
	Thermodynamic effects of proline introduction on protein stability [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 66, No. 2. (2007), pp. 480-491. by Ravindra S. Prajapati, Mili Das, Sridhar Sreeramulu, et al.Minhajuddin Sirajuddin, Sankaranarayanan Srinivasan, Vaishnavi Krishnamurthy, Ranganathan Ranjani, C. Ramakrishnan, Raghavan Varadarajan posted to proline stability by cat_worth on 2007-10-29 11:37:19 as
	Comparison between computational alanine scanning and per-residue binding free energy decomposition for protein-protein association using MM-GBSA: Application to the TCR-p-MHC complex [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 67, No. 4. (2007), pp. 1026-1047. by Vincent Zoete, Olivier Michielin posted to binding_energy protein-interactions by cat_worth on 2007-10-29 11:25:52 as
	Patterns in ionizable side chain interactions in protein structures [My Copy] Proteins: Structure, Function, and Genetics, Vol. 24, No. 4. (1996), pp. 439-449. by Daniele Gandini, Luca Gogioso, Martino Bolognesi, Domenico Bordo posted to hydrogen_bonding protonation by cat_worth on 2007-10-26 12:29:54 as
	Intermolecular Nonbonded Contact Distances in Organic Crystal Structures: Comparison with Distances Expected from van der Waals Radii [My Copy] J. Phys. Chem., Vol. 100, No. 18. (2 May 1996), pp. 7384-7391. by R. S. Rowland, R. Taylor posted to hydrogen_bonding vdw by cat_worth on 2007-10-23 13:31:49 as along with 1 person kimikazu
	Hiking in the energy landscape in sequence space: a bumpy road to good folders. [My Copy] Proteins, Vol. 39, No. 3. (15 May 2000), pp. 244-251. by G. Tiana, R. A. Broglia, E. I. Shakhnovich posted to entropy by cat_worth on 2007-10-17 17:41:19 as
	How evolution makes proteins fold quickly [My Copy] PNAS, Vol. 95, No. 9. (28 April 1998), pp. 4976-4981. by Leonid A. Mirny, Victor I. Abkevich, Eugene I. Shakhnovich posted to entropy by cat_worth on 2007-10-17 17:37:05 as along with 1 person medic0747
	Evolutionary conservation of the folding nucleus [My Copy] Journal of Molecular Biology, Vol. 308, No. 2. (27 April 2001), pp. 123-129. by Leonid Mirny, Eugene Shakhnovich posted to entropy by cat_worth on 2007-10-17 17:33:11 as
	Hydrogen-bonding and packing features of membrane proteins: functional implications. [My Copy] Biophys J (5 October 2007) by Peter Hildebrand, Stefan Guenther, Andrean Goede, Lucy Forrest, Cornelius Frömmel, Robert Preissner posted to hydrogen_bonding_networks membrane_proteins by cat_worth on 2007-10-15 10:13:35 as
	PROVAT: a tool for Voronoi tessellation analysis of protein structures and complexes [My Copy] Bioinformatics, Vol. 21, No. 15. (1 August 2005), pp. 3316-3317. by Swanand P. Gore, David F. Burke, Tom L. Blundell posted to provat solvation by cat_worth on 2007-10-11 16:05:20 as along with 4 people and 2 groups krapnik jwm siebertm sebk Radiation_Damage Stressosome
	Benchmarking pKa prediction [My Copy] BMC Biochemistry, Vol. 7 (02 June 2006), 18. by Matthew N. Davies, Christopher P. Toseland, David S. Moss, Darren R. Flower posted to mcce pka by cat_worth on 2007-10-11 15:18:31 as along with 5 people franklu310 zfekete bicko sim82 RamuAnandakrishnan
	An assessment of the accuracy of methods for predicting hydrogen positions in protein structures. [My Copy] Proteins, Vol. 61, No. 2. (1 November 2005), pp. 296-309. by L. R. Forrest, B. Honig posted to mcce protonation by cat_worth on 2007-10-11 14:33:58 as along with 2 people and 2 groups flbarroso ana structural_bioinformatics Bioinformatics
	Enhancing the stability and solubility of TEV protease using in silico design. [My Copy] Protein Sci (28 September 2007) by Lisa D D. Cabrita, Dimitri Gilis, Amy L L. Robertson, Yves Dehouck, Marianne Rooman, Stephen P P. Bottomley posted to protein_engineering stability by cat_worth on 2007-10-08 09:23:21 as
	Intrahelical hydrogen bonding of serine, threonine and cysteine residues within [alpha]-helices and its relevance to membrane-bound proteins [My Copy] Journal of Molecular Biology, Vol. 175, No. 1. (5 May 1984), pp. 75-81. by T. M. Gray, B. W. Matthews posted to hydrogen_bonding by cat_worth on 2007-10-04 13:41:41 as
	Electrostatic interactions in the denatured state ensemble: Their effect upon protein folding and protein stability [My Copy] Archives of Biochemistry and Biophysics, Vol. In Press, Corrected Proof by Jae-Hyun Cho, Satoshi Sato, Jia-Cherng Horng, Burcu Anil, Daniel P. Raleigh posted to electrostatics folding stability by cat_worth on 2007-10-02 13:50:22 as
	Classification of conformational stability of protein mutants from 3D pseudo-folding graph representation of protein sequences using support vector machines. [My Copy] Proteins (24 July 2007) by Michael Fernández, Julio Caballero, Leyden Fernández, Jose Ignacio I. Abreu, Gianco Acosta posted to disease-associated stability by cat_worth on 2007-07-30 09:16:46 as along with 1 group structural_bioinformatics
	SNAP: predict effect of non-synonymous polymorphisms on function. [My Copy] Nucleic acids research, Vol. 35, No. 11. (28 June 2007), pp. 3823-3835. by Yana Bromberg, Burkhard Rost posted to disease-associated function-prediction snps by cat_worth on 2007-07-02 11:41:28 as along with 3 people and 1 group daforerog benjaminsb guhjy structural_bioinformatics
	Experiments Suggest that Simulations May Overestimate Electrostatic Contributions to the Mechanical Stability of a Fibronectin Type III Domain. [My Copy] J Mol Biol (9 June 2007) by Sean P P. Ng, Jane Clarke posted to protonation stability by cat_worth on 2007-07-02 11:38:51 as along with 1 person and 1 group choonpeng structural_bioinformatics
	Genome-wide association study identifies novel breast cancer susceptibility loci [My Copy] Nature (27 May 2007) by Douglas F. Easton, Karen A. Pooley, Alison M. Dunning, et al.Paul D. P. Pharoah, Deborah Thompson, Dennis G. Ballinger, Jeffery P. Struewing, Jonathan Morrison, Helen Field, Robert Luben, Nicholas Wareham, Shahana Ahmed, Catherine S. Healey, Richard Bowman, Kerstin B. Meyer, Christopher A. Haiman, Laurence K. Kolonel, Brian E. Henderson, Loic Le Marchand, Paul Brennan, Suleeporn Sangrajrang, Valerie Gaborieau, Fabrice Odefrey, Chen-Yang Shen, Pei-Ei Wu, Hui-Chun Wang, Diana Eccles, Gareth D. Evans, Julian Peto, Olivia Fletcher, Nichola Johnson, Sheila Seal, Michael R. Stratton, Nazneen Rahman, Georgia Chenevix-Trench, Stig E. Bojesen, Børge G. Nordestgaard, Christen K. Axelsson, Montserrat Garcia-Closas, Louise Brinton, Stephen Chanock, Jolanta Lissowska, Beata Peplonska, Heli Nevanlinna, Rainer Fagerholm, Hannaleena Eerola, Daehee Kang, Keun-Young Yoo, Dong-Young Noh, Sei-Hyun Ahn, David J. Hunter, Susan E. Hankinson, David G. Cox, Per Hall, Sara Wedren, Jianjun Liu, Yen-Ling Low, Natalia Bogdanova, Peter Schürmann, Thilo Dörk, Rob A. E. M. Tollenaar, Catharina E. Jacobi, Peter Devilee, Jan G. M. Klijn, Alice J. Sigurdson, Michele M. Doody, Bruce H. Alexander, Jinghui Zhang, Angela Cox, Ian W. Brock, Gordon Macpherson, Malcolm W. R. Reed, Fergus J. Couch, Ellen L. Goode, Janet E. Olson, Hanne Meijers-Heijboer, Ans van den Ouweland, André Uitterlinden, Fernando Rivadeneira, Roger L. Milne, Gloria Ribas, Anna Gonzalez-Neira, Javier Benitez, John L. Hopper, Margaret Mccredie, Melissa Southey, Graham G. Giles, Chris Schroen, Christina Justenhoven, Hiltrud Brauch, Ute Hamann, Yon-Dschun Ko, Amanda B. Spurdle, Jonathan Beesley, Xiaoqing Chen, Arto Mannermaa, Veli-Matti Kosma, Vesa Kataja, Jaana Hartikainen, Nicholas E. Day, David R. Cox, Bruce A. J. Ponder posted to cancer genome-wide snps by cat_worth on 2007-06-28 09:41:38 as along with 9 people and 1 group Zephyrus songpku Terkko jfr joepickrell caseybrown xingxu jo_davies srp33 structural_bioinformatics
	Contribution of polar groups in the interior of a protein to the conformational stability. [My Copy] Biochemistry, Vol. 40, No. 15. (17 April 2001), pp. 4853-4858. by K. Takano, Y. Yamagata, K. Yutani posted to buried polar stability by cat_worth on 2007-05-29 09:39:08 as along with 1 group structural_bioinformatics
	Thermodynamic consequences of burial of polar and non-polar amino acid residues in the protein interior. [My Copy] J Mol Biol, Vol. 320, No. 2. (5 July 2002), pp. 343-357. by V. V. Loladze, D. N. Ermolenko, G. I. Makhatadze posted to burial buried polar stability by cat_worth on 2007-05-29 09:36:45 as along with 1 group structural_bioinformatics
	Deleterious SNP prediction: be mindful of your training data! [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 6. (15 March 2007), pp. 664-672. by Matthew A. Care, Chris J. Needham, Andrew J. Bulpitt, David R. Westhead posted to function-prediction snps stability by cat_worth on 2007-05-21 12:29:37 as along with 2 people and 1 group bicko massivemayhem structural_bioinformatics
	Strong and weak hydrogen bonds in the protein-ligand interface. [My Copy] Proteins (5 January 2007) by Sunil K K. Panigrahi, Gautam R R. Desiraju posted to hydrogen_bonding by cat_worth on 2007-04-10 11:27:13 as along with 3 people and 1 group Lombardo_7 BragilMassoud friendpine structural_bioinformatics
	Point Mutations in Protein Globular Domains: Contributions from Function, Stability and Misfolding [My Copy] Journal of Molecular Biology, Vol. 363, No. 2. (20 October 2006), pp. 422-432. by I. E. Sanchez, J. Tejero, C. Gomez-Moreno, M. Medina, L. Serrano posted to evolution snps stability by cat_worth on 2007-03-12 09:30:37 as along with 2 people and 2 groups barry chad_davis structural_bioinformatics Bioinformatics
	Significance of aromatic-backbone amide interactions in protein structure [My Copy] Proteins: Structure, Function, and Genetics, Vol. 43, No. 4. (2001), pp. 373-381. by Gergely Tóth, Charles R. Watts, Richard F. Murphy, Sándor Lovas posted to aromatic electrostatics by cat_worth on 2007-02-27 17:40:52 as along with 1 group structural_bioinformatics
	A recurring two-hydrogen-bond motif incorporating A serine or threonine residue is found both at [alpha]-helical N termini and in other situations [My Copy] Journal of Molecular Biology, Vol. 286, No. 5. (12 March 1999), pp. 1651-1662. by Wai-Yan Wan, James E. Milner-White posted to hydrogen_bonding ser thr by cat_worth on 2007-02-27 17:39:22 as along with 1 person and 1 group martainn structural_bioinformatics
	A natural grouping of motifs with an aspartate or asparagine residue forming two hydrogen bonds to residues ahead in sequence: their occurrence at [alpha]-helical N termini and in other situations [My Copy] Journal of Molecular Biology, Vol. 286, No. 5. (12 March 1999), pp. 1633-1649. by Wai-Yan Wan, James E. Milner-White posted to asn asp hydrogen_bonding by cat_worth on 2007-02-27 17:38:32 as along with 1 group structural_bioinformatics
	Significance of aromatic-backbone amide interactions in protein structure. [My Copy] Proteins, Vol. 43, No. 4. (1 June 2001), pp. 373-381. by G. Tóth, C. R. Watts, R. F. Murphy, S. Lovas posted to hydrogen_bonding by cat_worth on 2007-02-27 09:57:33 as along with 1 group structural_bioinformatics
	The occurrence of C-H...O hydrogen bonds in proteins. [My Copy] J Mol Biol, Vol. 252, No. 2. (15 September 1995), pp. 248-262. by Z. S. Derewenda, L. Lee, U. Derewenda posted to hydrogen_bonding by cat_worth on 2007-02-27 09:56:34 as along with 1 group structural_bioinformatics
	Hydrogen bonds with [pi]-acceptors in proteins: frequencies and role in stabilizing local 3D structures [My Copy] Journal of Molecular Biology, Vol. 305, No. 3. (19 January 2001), pp. 535-557. by Thomas Steiner, Gertraud Koellner posted to hydrogen_bonding pi by cat_worth on 2007-02-27 09:53:09 as along with 1 group structural_bioinformatics
	Side chain dynamics and alternative hydrogen bonding in the mechanism of protein thermostabilization. [My Copy] J Biomol Struct Dyn, Vol. 24, No. 3. (December 2006), pp. 255-262. by N. N. Khechinashvili, M. V. Fedorov, A. V. Kabanov, S. Monti, C. Ghio, K. Soda posted to stability polar hydrogen_bonding by cat_worth on 2007-02-11 12:01:22 as along with 1 group structural_bioinformatics

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snps	30
disease-associated	22
stability	21
structure-based	13
hydrogen_bonding	12
entropy	9
folding	8
function-prediction	8
gpcr	7
buried	6
genome-wide	6
polar	5
database	4
protonation	4
charged	3
electrostatics	3
human_genetic_diversity	3
hydrogen_bonding_networks	3
membrane_proteins	3
protein-interactions	3
aggregation	2
burial	2
cam	2
cancer	2
hapmap	2
mcce	2
ph	2
sequence-based	2
aa	1
activated	1
active_site	1
aromatic	1
asn	1
asp	1
binding_energy	1
candidate_gene	1
cnv	1
compensatory	1
complex-diseases	1
conserved	1
contact_map	1
crescendo	1
eef	1
evolution	1
evolutionary_trace	1
ligand	1
mol_dynamics	1
ncbi	1
pharmacogenetics	1
physicochemical	1
pi	1
pka	1
proline	1
protein_engineering	1
provat	1
review	1
ser	1
snp	1
solvation	1
substitution-table	1
surface	1
synonymous	1
systems_biology	1
thr	1
vdw	1
xtal_structure	1

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