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catmat's library [20 articles]

Recent papers added to catmat's library.
  • A model-based approach to selection of tag SNPs
    BMC Bioinformatics, Vol. 7 (15 June 2006), 303.
    by Pierre Nicolas, Fengzhu Sun, Lei M Li
    posted to snp by catmat on 2008-05-14 10:36:33 as ** along with 2 people Ayest ashandanj
  • Statistical Applications in Genetics and Molecular Biology
    Statistical Applications in Genetics and Molecular Biology, Vol. 7, No. 1.
    by Gregory Leibon, Daniel N Rockmore, Martin R Pollak
    posted to snp linkage by catmat on 2008-05-13 09:15:05 as ** along with 1 person Ayest
  • Correcting BLAST e-values for low-complexity segments.
    J Comput Biol, Vol. 12, No. 7. (September 2005), pp. 980-1003.
    by I Sharon, A Birkland, K Chang, R El-Yaniv, G Yona
    posted to local_score by catmat on 2005-11-17 14:19:52 as ***
  • A fast algorithm for determining the best combination of local alignments to a query sequence.
    BMC Bioinformatics, Vol. 5 (18 May 2004)
    by GC Conant, A Wagner
    posted to local_score by catmat on 2005-11-14 16:40:52 as *
  • Enhanced statistics for local alignment of multiple alignments improves prediction of protein function and structure.
    Bioinformatics, Vol. 21, No. 13. (1 July 2005), pp. 2950-2956.
    by M Frenkel-Morgenstern, H Voet, S Pietrokovski
    posted to local_score by catmat on 2005-11-14 16:39:11 as **
  • notes A simple approximation for the distribution of the weighted combination of non-independent or independent probabilities
    Statistics & Probability Letters, Vol. 73, No. 2. (15 June 2005), pp. 179-187.
    by Chia-Ding Hou
    posted to local_score by catmat on 2005-11-14 16:37:32 as **
  • Convergent Island Statistics: a fast method for determining local alignment score significance.
    Bioinformatics, Vol. 21, No. 12. (15 June 2005), pp. 2827-2831.
    by A Poleksic, JF Danzer, K Hambly, DA Debe
    posted to local_score by catmat on 2005-11-14 16:33:57 as *
  • The InDeVal insertion/deletion evaluation tool: a program for finding target regions in DNA sequences and for aiding in sequence comparison.
    BMC Bioinformatics, Vol. 5 (29 October 2004)
    by SD Stoneberg Holt, JA Holt
    posted to local_score by catmat on 2005-11-14 16:32:29 as **
  • Rapid assessment of extremal statistics for gapped local alignment.
    Proc Int Conf Intell Syst Mol Biol (1999), pp. 211-222.
    by R Olsen, R Bundschuh, T Hwa
    posted to local_score by catmat on 2005-11-14 16:10:30 as *
  • Mauve: multiple alignment of conserved genomic sequence with rearrangements.
    Genome Res, Vol. 14, No. 7. (July 2004), pp. 1394-1403.
    by AC Darling, B Mau, FR Blattner, NT Perna
    posted to local_score by catmat on 2005-11-14 16:09:36 as ** along with 6 people and 1 group Neeperando mariakmejia operon AaronDarling leelarcombe azazello gatech-compgenomics
  • Improved approximation algorithms for rectangle tiling and packing
    (2001), pp. 427-436.
    by Piotr Berman, Bhaskar Dasgupta, S Muthukrishnan, Suneeta Ramaswami
    posted to local_score by catmat on 2005-11-14 16:07:29 as **
  • Comparative genomics approaches to study organism similarities and differences.
    J Biomed Inform, Vol. 35, No. 2. (April 2002), pp. 142-150.
    by L Wei, Y Liu, I Dubchak, J Shon, J Park
    posted to local_score by catmat on 2005-11-14 16:03:18 as **
  • PatternHunter: faster and more sensitive homology search.
    Bioinformatics, Vol. 18, No. 3. (March 2002), pp. 440-445.
    by B Ma, J Tromp, M Li
    posted to local_score by catmat on 2005-11-14 16:01:05 as ** along with 6 people bozdagd nuke2005 treangen natstreet nedwards DickSilver
  • notes Comparison of genomic DNA sequences: solved and unsolved problems.
    Bioinformatics, Vol. 17, No. 5. (May 2001), pp. 391-397.
    by W Miller
    posted to local_score by catmat on 2005-11-14 15:56:25 as ***
  • The estimation of statistical parameters for local alignment score distributions.
    Nucleic Acids Res, Vol. 29, No. 2. (15 January 2001), pp. 351-361.
    by SF Altschul, R Bundschuh, R Olsen, T Hwa
    posted to local_score by catmat on 2005-11-14 15:45:16 as **** along with 2 people newton1234 treangen
  • A lower confidence bound for the change point after a sequential CUSUM test
    Journal of Statistical Planning and Inference, Vol. 115, No. 1. (1 July 2003), pp. 311-326.
    by Keyue Ding
    posted to local_score by catmat on 2005-11-14 15:42:06 as **
  • Reverse Engineering And Optimisation Of The BLASTP Program
    by Shawn Delaney
    posted to local_score by catmat on 2005-11-14 15:31:45 as **
  • The Gumbel pre-factor k for gapped local alignment can be estimated from simulations of global alignment.
    Nucleic Acids Res, Vol. 33, No. 15. (2005), pp. 4987-4994.
    by S Sheetlin, Y Park, JL Spouge
    posted to local_score by catmat on 2005-11-14 15:28:16 as **
  • Approximate P-values for Local Sequence Alignments
    Ann. Statist., Vol. 28, No. 3. (2000), pp. 657-680.
    by David Siegmund, Benjamin Yakir
    posted to local_score by catmat on 2005-11-14 15:24:19 as ***
  • Approximate p-values for local sequence alignments: numerical studies.
    J Comput Biol, Vol. 8, No. 5. (2001), pp. 549-556.
    by JD Storey, D Siegmund
    posted to local_score by catmat on 2005-11-14 15:17:39 as ***
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