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	HIV integration site selection: Analysis by massively parallel pyrosequencing reveals association with epigenetic modifications [My Copy] Genome Research, Vol. 17, No. 8. (1 August 2007), pp. 1186-1194. by Gary P. Wang, Angela Ciuffi, Jeremy Leipzig, Charles C. Berry, Frederic D. Bushman posted to bioinformatics ccb_biblio classification genomics statistics by cberry on 2007-06-12 19:33:04 as along with 1 person and 1 group operon BergmanLab
	HIV-1 Integration in the Human Genome Favors Active Genes and Local Hotspots [My Copy] Cell, Vol. 110, No. 4. (23 August 2002), pp. 521-529. by Astrid R. Schroder, Paul Shinn, Huaming Chen, Charles Berry, Joseph R. Ecker, Frederic Bushman posted to ccb_biblio classification genomics microarray by cberry on 2007-06-11 01:13:47 as
	Semi-Supervised Methods to Predict Patient Survival from Gene Expression Data [My Copy] PLoS Biology, Vol. 2, No. 4. (1 April 2004), e108. by Eric Bair, Robert Tibshirani posted to ccbsrgbwg classification clustering microarray by cberry on 2007-02-14 17:40:47 as along with 4 people aalibes shigepong abhattac klo
	Gene Expression in Kidney Cancer Is Associated with Cytogenetic Abnormalities, Metastasis Formation, and Patient Survival [My Copy] Clin Cancer Res, Vol. 11, No. 2. (15 January 2005), pp. 646-655. by Holger Sultmann, Anja Heydebreck, Wolfgang Huber, et al.Ruprecht Kuner, Andreas Buness, Markus Vogt, Bastian Gunawan, Martin Vingron, Laszlo Fuzesi, Annemarie Poustka posted to microarray discovery clustering classification ccbsrgbwg by cberry on 2007-02-06 00:48:06 as
	Variable Selection for Cox's Proportional Hazards Model and Frailty Model [My Copy] The Annals of Statistics, Vol. 30, No. 1. (2002), pp. 74-99. by Jianqing Fan, Runze Li posted to regression profile penalized partial msc2000 model likelihood lasso frailty coxs ccbsrgbwg bibtex-import 62n02 62f12 by cberry on 2007-01-26 23:30:05 as
	Predicting Cancer Patient Survival with Gene Expression Data [My Copy] PLoS Biology, Vol. 2, No. 4. (1 April 2004), e118. posted to ccbsrgbwg by cberry on 2007-01-26 02:13:02 as
	Penalized Cox regression analysis in the high-dimensional and low-sample size settings, with applications to microarray gene expression data [My Copy] Bioinformatics, Vol. 21, No. 13. (1 July 2005), pp. 3001-3008. by Jiang Gui, Hongzhe Li posted to microarray ccbsrgbwg by cberry on 2007-01-23 19:03:48 as along with 1 person guhjy
	CpG Island Methylation in Human Lymphocytes Is Highly Correlated with DNA Sequence, Repeats, and Predicted DNA Structure [My Copy] PLoS Genetics, Vol. 2, No. 3. (1 March 2006), e26. by Christoph Bock, Martina Paulsen, Sascha Tierling, Thomas Mikeska, Thomas Lengauer, Jörn Walter posted to discovery classification bioinformatics by cberry on 2007-01-19 19:51:30 as along with 3 people rdiaz olympos inesdesantiago
	Validation in Genomics: CpG Island Methylation Revisited, [My Copy] Statistical Applications in Genetics and Molecular Biology, Vol. 5, No. 1. (2006) by Mark R. Segal posted to discovery classification bioinformatics by cberry on 2007-01-19 19:31:42 as
	Reproducibility Probability Score—incorporating measurement variability across laboratories for gene selection [My Copy] Nature Biotechnology, Vol. 24, No. 12., pp. 1476-1477. by Guixian Lin, Xuming He, Hanlee Ji, Leming Shi, Ronald W. Davis, Sheng Zhong posted to ccbsrgbwg by cberry on 2007-01-09 01:56:17 as along with 2 people guhjy jfr
	Cross-platform comparability of microarray technology: Intra-platform consistency and appropriate data analysis procedures are essential [My Copy] BMC Bioinformatics, Vol. 6, No. Suppl 2. (2005) by Leming Shi, Weida Tong, Hong Fang, et al.Uwe Scherf, Jing Han, Raj Puri, Felix Frueh, Federico Goodsaid, Lei Guo, Zhenqiang Su, Tao Han, James Fuscoe, Alex Z. Xu, Tucker Patterson, Huixiao Hong, Qian Xie, Roger Perkins, James Chen, Daniel Casciano posted to ccb_biblio ccbsrgbwg by cberry on 2006-12-30 19:40:35 as along with 2 people lwaldron jfr
	Statistical Challenges in Functional Genomics [My Copy] Statistical Science, Vol. 18, No. 1. (2003), pp. 33-70. by Paola Sebastiani, Emanuela Gussoni, Isaac S. Kohane, Marco F. Ramoni posted to analysis bioinformatics classification clustering differential expression functional gene genomics microarray bibtex-import by cberry on 2006-12-28 01:30:25 as
	Robbins, Empirical Bayes and Microarrays [My Copy] The Annals of Statistics, Vol. 31, No. 2. (2003), pp. 366-378. by Bradley Efron posted to 62f10 discovery estimation false inference inference--point missing msc2000 parametric q-value rate simultaneous species stein bibtex-import by cberry on 2006-12-28 01:28:12 as
	Sample size determination in microarray experiments for class comparison and prognostic classification [My Copy] Biostatistics, Vol. 6, No. 1., 27. by Kevin Dobbin, Richard Simon posted to no-tag by cberry on 2006-12-26 23:52:27 as along with 5 people and 1 group rdiaz dswan frohike ugengma aviad_work Bioinformatics
	On The So-Called "Huber Sandwich Estimator" and "Robust Standard Errors" [My Copy] The American Statistician, Vol. 60, No. 4. (November 2006), pp. 299-302. by Freedman, A. David posted to sandwich statistics variance by cberry on 2006-12-26 17:10:13 as along with 2 people peterwyang babawomba
	Prediction of continuous positive airway pressure in obstructive sleep apnea. [My Copy] Sleep Breath (7 November 2006) by José S. Loredo, Charles Berry, Richard A. Nelesen, Joel E. Dimsdale posted to ccb_biblio by cberry on 2006-12-26 16:41:38 as
	Gene-expression profiles to predict distant metastasis of lymph-node-negative primary breast cancer. [My Copy] Lancet, Vol. 365, No. 9460. (5 2005), pp. 671-679. by Yixin Wang, Jan G. Klijn, Yi Zhang, et al.Anieta M. Sieuwerts, Maxime P. Look, Fei Yang, Dmitri Talantov, Mieke Timmermans, Marion E. Meijer-van Gelder, Jack Yu, Tim Jatkoe, Els M. Berns, David Atkins, John A. Foekens posted to ccbsrgbwg by cberry on 2006-12-23 19:57:15 as along with 12 people and 2 groups tonamswish yaredo lwaldron provero windman83 laral jfr tuck giovanni frohike giovenko winterschlaefer Bioinformatics GeschwindLab
	Concordance among gene-expression-based predictors for breast cancer. [My Copy] N Engl J Med, Vol. 355, No. 6. (10 August 2006), pp. 560-569. by C. Fan, D. S. Oh, L. Wessels, et al.B. Weigelt, D. S. Nuyten, A. B. Nobel, L. J. van't Veer, C. M. Perou posted to ccbsrgbwg by cberry on 2006-12-23 19:56:10 as along with 6 people Zephyrus zufar frohike misonneh jfr jdiezperezj
	Rat toxicogenomic study reveals analytical consistency across microarray platforms [My Copy] Nature Biotechnology, Vol. 24, No. 9. (08 September 2006), pp. 1162-1169. by Lei Guo, Edward K. Lobenhofer, Charles Wang, et al.Richard Shippy, Stephen C. Harris, Lu Zhang, Nan Mei, Tao Chen, Damir Herman, Federico M. Goodsaid, Patrick Hurban, Kenneth L. Phillips, Jun Xu, Xutao Deng, Yongming A. Sun, Weida Tong, Yvonne P. Dragan, Leming Shi posted to ccbsrgbwg by cberry on 2006-12-23 19:53:34 as along with 4 people rdiaz jfr jdiggans giovenko
	The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements. [My Copy] Nature biotechnology, Vol. 24, No. 9. (September 2006), pp. 1151-1161. by , L. Shi, L. H. Reid, et al.W. D. Jones, R. Shippy, J. A. Warrington, S. C. Baker, P. J. Collins, F. de Longueville, E. S. Kawasaki, K. Y. Lee, Y. Luo, Y. A. Sun, J. C. Willey, R. A. Setterquist, G. M. Fischer, W. Tong, Y. P. Dragan, D. J. Dix, F. W. Frueh, F. M. Goodsaid, D. Herman, R. V. Jensen, C. D. Johnson, E. K. Lobenhofer, R. K. Puri, U. Schrf, J. Thierry-Mieg, C. Wang, M. Wilson, P. K. Wolber, L. Zhang, S. Amur, W. Bao, C. C. Barbacioru, A. B. Lucas, V. Bertholet, C. Boysen, B. Bromley, D. Brown, A. Brunner, R. Canales, X. M. Cao, T. A. Cebula, J. J. Chen, J. Cheng, T. M. Chu, E. Chudin, J. Corson, J. C. Corton, L. J. Croner, C. Davies, T. S. Davison, G. Delenstarr, X. Deng, D. Dorris, A. C. Eklund, X. H. Fan, H. Fang, S. Fulmer-Smentek, J. C. Fuscoe, K. Gallagher, W. Ge, L. Guo, X. Guo, J. Hager, P. K. Haje, J. Han, T. Han, H. C. Harbottle, S. C. Harris, E. Hatchwell, C. A. Hauser, S. Hester, H. Hong, P. Hurban, S. A. Jackson, H. Ji, C. R. Knight, W. P. Kuo, J. E. LeClerc, S. Levy, Q. Z. Li, C. Liu, Y. Liu, M. J. Lombardi, Y. Ma, S. R. Magnuson, B. Maqsodi, T. McDaniel, N. Mei, O. Myklebost, B. Ning, N. Novoradovskaya, M. S. Orr, T. W. Osborn, A. Papallo, T. A. Patterson, R. G. Perkins, E. H. Peters, R. Peterson, K. L. Philips, P. S. Pine, L. Pusztai, F. Qian, H. Ren, M. Rosen, B. A. Rosenzweig, R. R. Samaha, M. Schena, G. P. Schroth, S. Shchegrova, D. D. Smith, F. Staedtler, Z. Su, H. Sun, Z. Szallasi, Z. Tezak, D. Thierry-Mieg, K. L. Thompson, I. Tikhonova, Y. Turpaz, B. Vallanat, C. Van, S. J. Walker, S. J. Wang, Y. Wang, R. Wolfinger, A. Wong, J. Wu, C. Xiao, Q. Xie, J. Xu, W. Yang, L. Zhang, S. Zhong, Y. Zong, W. Slikker posted to ccbsrgbwg by cberry on 2006-12-23 19:53:09 as along with 18 people VGreiff bertelsen lwaldron daforerog rdiaz jo_davies pengchy kentsis jfr jdiggans qmwwallace shigepong caseybrown giovenko shikin slevy03 guhjy vmsr
	Performance comparison of one-color and two-color platforms within the Microarray Quality Control (MAQC) project [My Copy] Nature Biotechnology, Vol. 24, No. 9. (08 September 2006), pp. 1140-1150. by Tucker A. Patterson, Edward K. Lobenhofer, Stephanie B. Fulmer-Smentek, et al.Patrick J. Collins, Tzu-Ming Chu, Wenjun Bao, Hong Fang, Ernest S. Kawasaki, Janet Hager, Irina R. Tikhonova, Stephen J. Walker, Liang Zhang, Patrick Hurban, Francoise de Longueville, James C. Fuscoe, Weida Tong, Leming Shi, Russell D. Wolfinger posted to ccbsrgbwg by cberry on 2006-12-23 19:52:44 as along with 5 people frohike rdiaz jfr ghattem giovenko
	Evaluation of external RNA controls for the assessment of microarray performance [My Copy] Nature Biotechnology, Vol. 24, No. 9. (09 August 2006), pp. 1132-1139. by Weida Tong, Anne B. Lucas, Richard Shippy, et al.Xiaohui Fan, Hong Fang, Huixiao Hong, Michael S. Orr, Tzu-Ming Chu, Xu Guo, Patrick J. Collins, Yongming A. Sun, Sue-Jane Wang, Wenjun Bao, Russell D. Wolfinger, Svetlana Shchegrova, Lei Guo, Janet A. Warrington, Leming Shi posted to ccbsrgbwg by cberry on 2006-12-23 19:52:19 as along with 3 people coela jfr giovenko
	Using RNA sample titrations to assess microarray platform performance and normalization techniques [My Copy] Nature Biotechnology, Vol. 24, No. 9. (08 September 2006), pp. 1123-1131. by Richard Shippy, Stephanie Fulmer-Smentek, Roderick V. Jensen, et al.Wendell D. Jones, Paul K. Wolber, Charles D. Johnson, Scott P. Pine, Cecilie Boysen, Xu Guo, Eugene Chudin, Yongming A. Sun, James C. Willey, Jean Thierry-Mieg, Danielle Thierry-Mieg, Robert A. Setterquist, Mike Wilson, Anne B. Lucas, Natalia Novoradovskaya, Adam Papallo, Yaron Turpaz, Shawn C. Baker, Janet A. Warrington, Leming Shi, Damir Herman posted to ccbsrgbwg by cberry on 2006-12-23 19:51:58 as along with 3 people stsaft rdiaz jfr
	Evaluation of DNA microarray results with quantitative gene expression platforms [My Copy] Nature Biotechnology, Vol. 24, No. 9. (08 September 2006), pp. 1115-1122. by Roger D. Canales, Yuling Luo, James C. Willey, et al.Bradley Austermiller, Catalin C. Barbacioru, Cecilie Boysen, Kathryn Hunkapiller, Roderick V. Jensen, Charles R. Knight, Kathleen Y. Lee, Yunqing Ma, Botoul Maqsodi, Adam Papallo, Elizabeth H. Peters, Karen Poulter, Patricia L. Ruppel, Raymond R. Samaha, Leming Shi, Wen Yang, Lu Zhang, Federico M. Goodsaid posted to ccbsrgbwg by cberry on 2006-12-23 19:51:34 as along with 6 people and 1 group VGreiff guhjy jfr giovanni qmwwallace giovenko GeschwindLab
	Data quality in genomics and microarrays [My Copy] Nature Biotechnology, Vol. 24, No. 9., pp. 1112-1113. by Hanlee Ji, Ronald W. Davis posted to ccbsrgbwg by cberry on 2006-12-23 19:51:05 as along with 1 person giovenko
	A framework for the use of genomics data at the EPA [My Copy] Nature Biotechnology, Vol. 24, No. 9., pp. 1108-1111. by David J. Dix, Kathryn Gallagher, William H. Benson, et al.Brenda L. Groskinsky, Thomas J. Mcclintock, Kerry L. Dearfield, William H. Farland posted to ccbsrgbwg by cberry on 2006-12-23 19:50:29 as along with 1 person giovenko
	Impact of microarray data quality on genomic data submissions to the FDA [My Copy] Nature Biotechnology, Vol. 24, No. 9., pp. 1105-1107. by Felix W. Frueh posted to ccbsrgbwg by cberry on 2006-12-23 19:50:07 as along with 3 people and 1 group giovanni giovenko jfr GeschwindLab
	Making the most of microarrays [My Copy] Nat Biotech, Vol. 24, No. 9. (2006), pp. 1039-1039. posted to ccbsrgbwg by cberry on 2006-12-23 19:49:41 as along with 2 people rdiaz giovenko
	Two-Dimensional Transcriptome Profiling: Identification of Messenger RNA Isoform Signatures in Prostate Cancer from Archived Paraffin-Embedded Cancer Specimens [My Copy] Cancer Res, Vol. 66, No. 8. (15 April 2006), pp. 4079-4088. by Hai-Ri Li, Jessica Wang-Rodriguez, Murlidharan T. Nair, et al.Joanne M. Yeakley, Young-Soo Kwon, Marina Bibikova, Christina Zheng, Lixin Zhou, Kui Zhang, Tracy Downs, Xiang-Dong Fu, Jian-Bing Fan posted to ccbsrgbwg by cberry on 2006-12-23 19:46:19 as along with 3 people wutongbin jfr vplagnol
	Gene selection for microarray data analysis using principal component analysis. [My Copy] Stat Med, Vol. 24, No. 13. (15 July 2005), pp. 2069-2087. by A. Wang, E. A. Gehan posted to ccsbsrgbwg by cberry on 2006-12-23 19:35:11 as

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