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ccots's library [394 articles]

Recent papers added to ccots's library.
  • Principal component analysis of quantitative trait loci for immune response to adenovirus in mice.
    Hereditas, Vol. 143, No. 2006. (December 2006), pp. 189-197.
    by S K Musani, HG Zhang, HC Hsu, N Yi, B S Gorman, D B Allison, J D Mountz
    posted to methods mouse pca qtl by ccots on 2007-03-20 02:00:55 as **
  • Utilization of a one-dimensional score for surveying chemical-induced changes in expression levels of multiple biomarker gene sets using a large-scale toxicogenomics database.
    J Toxicol Sci, Vol. 31, No. 5. (December 2006), pp. 433-448.
    by N Kiyosawa, K Shiwaku, M Hirode, K Omura, T Uehara, T Shimizu, Y Mizukawa, T Miyagishima, A Ono, T Nagao, T Urushidani
    posted to analysis methods rat toxgeno by ccots on 2007-03-20 02:00:13 as ***
  • Genetical genomics: use all data
    BMC Genomics, Vol. 8 (12 March 2007), 69.
    by Miguel Perez-Enciso, Jose R Quevedo, Antonio Bahamonde
    posted to eqtl gg methods by ccots on 2007-03-20 01:58:57 as *** along with 5 people caseybrown Ayest qfwills steff83 jo_davies
  • Shaping specificity in signaling networks
    Nature Genetics, Vol. 39, No. 3., pp. 286-287.
    by Réka Albert, Zoltán N Oltvai
    posted to crosstalk network pathway review signalling yeast by ccots on 2007-03-08 16:12:09 as *** along with 1 person and 1 group arne dIEMoSIRIS
  • Cross-talk and decision making in MAP kinase pathways.
    Nat Genet (28 January 2007)
    by Megan N N McClean, Areez Mody, James R R Broach, Sharad Ramanathan
    posted to crosstalk network pathway signalling yeast by ccots on 2007-03-08 15:55:05 as ** along with 3 people and 1 group jjray aswin arne dIEMoSIRIS
  • Genetic basis of individual differences in the response to small-molecule drugs in yeast.
    Nat Genet (4 March 2007)
    by Ethan O O Perlstein, Douglas M M Ruderfer, David C C Roberts, Stuart L L Schreiber, Leonid Kruglyak
    posted to chembio expression yeast by ccots on 2007-03-06 15:32:16 as *** along with 1 person caseybrown
  • Robustness Can Evolve Gradually in Complex Regulatory Gene Networks with Varying Topology
    PLoS Computational Biology, Vol. 3, No. 2. (1 February 2007), e15.
    by Stefano Ciliberti, Olivier C Martin, Andreas Wagner
    posted to evolution expression graph network regulatory topology by ccots on 2007-03-06 01:21:57 as **** along with 14 people and 5 groups eldan indigoviolet emilyhare malcook entropy nickluscombe aswin kengg dolhuis timflutre grahamc shigepong kynn carneiro EisenLab EBI-regulation SNE ParkinsonLab_at_MaRS Plantandetc
  • Meta-analysis for microarray studies of the genetics of complex traits.
    Trends Biotechnol, Vol. 25, No. 2. (February 2007), pp. 45-47.
    by MF Miles, RW Williams
    posted to data data-integration eqtl expression metaanalysis mouse review by ccots on 2007-03-06 01:18:04 as ***
  • Multivariate regression analysis of distance matrices for testing associations between gene expression patterns and related variables.
    Proc Natl Acad Sci U S A, Vol. 103, No. 51. (19 December 2006), pp. 19430-19435.
    by MA Zapala, NJ Schork
    posted to analysis clustering data expression methods by ccots on 2007-03-06 01:16:38 as ***
  • DNA variation and brain-region specific expression profiles show different relationships between inbred mouse strains: implications for eQTL mapping studies
    Genome Biology, Vol. 8 (26 February 2007), R25.
    by Iiris Hovatta, Matthew A Zapala, Ron S Broide, Eric E Schadt, Ondrej Libiger, Nicholas J Schork, David J Lockhart, Carrolee Barlow
    posted to brain eqtl expression mouse by ccots on 2007-03-06 01:13:01 as ***
  • Cross-species comparative toxicogenomics as an aid to safety assessment
    Expert Opinion on Drug Metabolism and Toxicology, Vol. 2, No. 6. (December 2006), pp. 859-874.
    by Mattes, B William
    posted to review species toxicogenomics by ccots on 2007-03-06 01:12:03 as **
  • Low frequency of CYP2D6 poor metabolizers among schizophrenia patients
    The Pharmacogenomics Journal, Vol. AOP
    by A Llerena1, P Dorado, Em Peñas-Lledó, Mc Cáceres, de La
    posted to cyp450 disease drug homo metabolism pharmacogenomics schizophrenia by ccots on 2007-03-06 00:54:32 as **
  • Drug metabolism by cultured human hepatocytes: how far are we from the in vivo reality?
    Altern Lab Anim, Vol. 32, No. 2. (Jun 2004), pp. 101-110.
    by X Ponsoda, MT Donato, Perez G Cataldo, Gómez MJ Lechón, JV Castell
    posted to model tissue toxicogenomics vitro vivo by ccots on 2007-02-24 18:26:29 as **
  • Human hepatic cell cultures: in vitro and in vivo drug metabolism
    Altern Lab Anim, Vol. 31, No. 3. (May-Jun 2003), pp. 257-265.
    by Gómez MJ Lechón, T Donato, X Ponsoda, JV Castell
    posted to model tissue toxicogenomics vitro vivo by ccots on 2007-02-24 18:26:29 as **
  • Molecular mechanisms underlying the dedifferentiation process of isolated hepatocytes and their cultures
    Curr Drug Metab, Vol. 7, No. 6. (Aug 2006), pp. 629-660.
    by G Elaut, T Henkens, P Papeleu, S Snykers, M Vinken, T Vanhaecke, V Rogiers
    posted to model tissue toxicogenomics vitro vivo by ccots on 2007-02-24 18:26:28 as **
  • Cell suspensions, cell cultures, and tissue slices--important metabolic in vitro systems
    Biomed Pap Med Fac Univ Palacky Olomouc Czech Repub, Vol. 145, No. 2. (Dec 2001), pp. 57-60.
    by K Cervenková, M Belejova, J Vesel�, Z Chmela, M Rypka, J Ulrichová, M Modriansk�, P Maurel
    posted to model tissue toxicogenomics vitro vivo by ccots on 2007-02-24 18:26:28 as **
  • Human hepatocytes in primary culture: the choice to investigate drug metabolism in man
    Curr Drug Metab, Vol. 5, No. 5. (Oct 2004), pp. 443-462.
    by Gómez MJ Lechón, MT Donato, JV Castell, R Jover
    posted to model tissue toxicogenomics vitro vivo by ccots on 2007-02-24 18:26:28 as **
  • Human hepatocytes as a tool for studying toxicity and drug metabolism
    Curr Drug Metab, Vol. 4, No. 4. (Aug 2003), pp. 292-312.
    by Gómez MJ Lechón, MT Donato, JV Castell, R Jover
    posted to model tissue toxicogenomics vitro vivo by ccots on 2007-02-24 18:26:28 as **
  • Cryopreserved primary hepatocytes as a constantly available in vitro model for the evaluation of human and animal drug metabolism and enzyme induction
    Drug Metab Rev, Vol. 32, No. 1. (Feb 2000), pp. 81-118.
    by JG Hengstler, D Utesch, P Steinberg, KL Platt, B Diener, M Ringel, N Swales, T Fischer, K Biefang, M Gerl, T Böttger, F Oesch
    posted to model tissue toxicogenomics vitro vivo by ccots on 2007-02-24 18:26:28 as **
  • Cell-based models to study hepatic drug metabolism and enzyme induction in humans
    Expert Opin Drug Metab Toxicol, Vol. 1, No. 1. (Jun 2005), pp. 75-90.
    by M Vermeir, P Annaert, RN Mamidi, D Roymans, W Meuldermans, G Mannens
    posted to model tissue toxicogenomics vitro vivo by ccots on 2007-02-24 18:26:28 as **
  • Precision-cut organ slices to investigate target organ injury
    Expert Opin Drug Metab Toxicol, Vol. 1, No. 4. (Dec 2005), pp. 687-699.
    by AE Vickers, RL Fisher
    posted to model tissue toxicogenomics vitro vivo by ccots on 2007-02-24 18:26:28 as **
  • New hepatocyte in vitro systems for drug metabolism: metabolic capacity and recommendations for application in basic research and drug development, standard operation procedures
    Drug Metab Rev, Vol. 35, No. 2-3. (May-Aug 2003), pp. 145-213.
    by R Gebhardt, JG Hengstler, D Müller, R Glöckner, P Buenning, B Laube, E Schmelzer, M Ullrich, D Utesch, N Hewitt, M Ringel, BR Hilz, A Bader, A Langsch, T Koose, HJ Burger, J Maas, F Oesch
    posted to model tissue toxicogenomics vitro vivo by ccots on 2007-02-24 18:26:28 as **
  • In vivo hepatotoxicity study of rats in comparison with in vitro hepatotoxicity screening system
    J Toxicol Sci, Vol. 31, No. 1. (Feb 2006), pp. 23-34.
    by R Kikkawa, M Fujikawa, T Yamamoto, Y Hamada, H Yamada, I Horii
    posted to model tissue toxicogenomics vitro vivo by ccots on 2007-02-24 18:26:28 as **
  • In vitro models to study hepatotoxicity
    Toxicol Pathol, Vol. 30, No. 3. (May-Jun 2002), pp. 394-399.
    by DA Groneberg, Grosse C Siestrup, A Fischer
    posted to model tissue toxicogenomics vitro vivo by ccots on 2007-02-24 18:26:27 as ** along with 1 person jyuh
  • Extended rat liver slice survival and stability monitored using clinical biomarkers
    Biochem Biophys Res Commun, Vol. 312, No. 1. (Dec 2003), pp. 209-213.
    by HP Behrsing, AE Vickers, CA Tyson
    posted to model tissue toxicogenomics vitro vivo by ccots on 2007-02-24 18:26:27 as **
  • Overview on the application of transcription profiling using selected nephrotoxicants for toxicology assessment
    Environ Health Perspect, Vol. 112, No. 4. (Mar 2004), pp. 460-464.
    by JA Kramer, SD Pettit, RP Amin, TA Bertram, B Car, M Cunningham, SW Curtiss, JW Davis, C Kind, M Lawton, JM Naciff, V Oreffo, RJ Roman, FD Sistare, J Stevens, K Thompson, AE Vickers, S Wild, CA Afshari
    posted to model tissue toxicogenomics vitro vivo by ccots on 2007-02-24 18:26:27 as **
  • Identification of putative gene based markers of renal toxicity
    Environ Health Perspect, Vol. 112, No. 4. (Mar 2004), pp. 465-479.
    by RP Amin, AE Vickers, F Sistare, KL Thompson, RJ Roman, M Lawton, J Kramer, HK Hamadeh, J Collins, S Grissom, L Bennett, CJ Tucker, S Wild, C Kind, V Oreffo, JW Davis, S Curtiss, JM Naciff, M Cunningham, R Tennant, J Stevens, B Car, TA Bertram, CA Afshari
    posted to model tissue toxicogenomics vitro vivo by ccots on 2007-02-24 18:26:27 as **
  • Organ slices for the evaluation of human drug toxicity
    Chem Biol Interact, Vol. 150, No. 1. (Nov 2004), pp. 87-96.
    by AE Vickers, RL Fisher
    posted to model tissue toxicogenomics vitro vivo by ccots on 2007-02-24 18:26:27 as **
  • Organ slice viability extended for pathway characterization: an in vitro model to investigate fibrosis
    Toxicol Sci, Vol. 82, No. 2. (Dec 2004), pp. 534-544.
    by AE Vickers, M Saulnier, E Cruz, MT Merema, K Rose, P Bentley, P Olinga
    posted to model tissue toxicogenomics vitro vivo by ccots on 2007-02-24 18:26:27 as **
  • Use of rat liver slices for the study of oxidative DNA damage in comparison with isolated rat liver nuclei and HepG2 human hepatoma cells
    Food Chem Toxicol, Vol. 38, No. 5. (May 2000), pp. 451-458.
    by YF Wang, ML Hu
    posted to model tissue toxicogenomics vitro vivo by ccots on 2007-02-24 18:26:26 as **
  • A microscale in vitro physiological model of the liver: predictive screens for drug metabolism and enzyme induction
    Curr Drug Metab, Vol. 6, No. 6. (Dec 2005), pp. 569-591.
    by A Sivaraman, JK Leach, S Townsend, T Iida, BJ Hogan, DB Stolz, R Fry, LD Samson, SR Tannenbaum, LG Griffith
    posted to model tissue toxicogenomics vitro vivo by ccots on 2007-02-24 18:26:26 as **
  • In vitro methods to study chemically-induced hepatotoxicity: a literature review
    Curr Drug Metab, Vol. 6, No. 2. (Apr 2005), pp. 111-125.
    by D Farkas, SR Tannenbaum
    posted to model tissue toxicogenomics vitro vivo by ccots on 2007-02-24 18:26:26 as **
  • Characterization of chemically induced hepatotoxicity in collagen sandwiches of rat hepatocytes
    Toxicol Sci, Vol. 85, No. 2. (Jun 2005), pp. 927-934.
    by D Farkas, SR Tannenbaum
    posted to model tissue toxicogenomics vitro vivo by ccots on 2007-02-24 18:26:26 as **
  • Characterization of the secreted proteome of rat hepatocytes cultured in collagen sandwiches
    Chem Res Toxicol, Vol. 18, No. 7. (Jul 2005), pp. 1132-1139.
    by D Farkas, VB Bhat, S Mandapati, JS Wishnok, SR Tannenbaum
    posted to model tissue toxicogenomics vitro vivo by ccots on 2007-02-24 18:26:26 as **
  • Comparative plasma proteome analysis of lymphoma-bearing SJL mice
    J Proteome Res, Vol. 4, No. 5. (Sep-Oct 2005), pp. 1814-1825.
    by VB Bhat, MH Choi, JS Wishnok, SR Tannenbaum
    posted to model tissue toxicogenomics vitro vivo by ccots on 2007-02-24 18:26:25 as **
  • A High-Resolution Map of Segmental DNA Copy Number Variation in the Mouse Genome
    PLoS Genetics, Vol. 3, No. 1. (1 January 2007), e3.
    by Timothy A Graubert, Patrick Cahan, Deepa Edwin, Rebecca R Selzer, Todd A Richmond, Peggy S Eis, William D Shannon, Xia Li, Howard L Mcleod, James M Cheverud, Timothy J Ley
    posted to cnv genome mouse by ccots on 2007-02-21 22:45:20 as read along with 1 group Bioinformatics
  • A DNA methylation–based switch generates bistable gene expression
    Nature Genetics, Vol. 39, No. 2., pp. 146-147.
    by Matthew R Bennett, Jeff Hasty
    posted to ecoli expression regulation switch by ccots on 2007-02-21 22:43:40 as **
  • Quantitative trait transcripts for nicotine resistance in Drosophila melanogaster
    Nature Genetics, Vol. 39, No. 2. (21 January 2007), pp. 264-268.
    by Gisele Passador-Gurgel, Wen-Ping Hsieh, Priscilla Hunt, Nigel Deighton, Greg Gibson
    posted to data-integration drosophila expression network pharmacogenetics qtl by ccots on 2007-02-21 22:41:41 as ****
  • Peripheral blood gene expression signature mirrors central nervous system disease: the model of multiple sclerosis.
    Autoimmun Rev, Vol. 5, No. 8. (October 2006), pp. 517-522.
    by A Achiron, M Gurevich
    posted to disease expression review specificity tissue by ccots on 2007-02-21 17:43:00 as *** along with 1 person and 1 group jeremymiller GeschwindLab
  • Differential network expression during drug and stress response
    Bioinformatics, Vol. 21, No. 12. (15 June 2005), pp. 2898-2905.
    by Lawrence Cabusora, Electra Sutton, Andy Fulmer, Christian V Forst
    posted to comparison method network by ccots on 2006-10-23 19:43:54 as ****
  • Bayesian mapping of genotype × expression interactions in quantitative and qualitative traits
    Heredity, Vol. aop, No. current.
    by F Hoti, MJ Sillanpää,
    posted to bayesian eqtl mapping methods by ccots on 2006-10-10 16:01:52 as * along with 2 people and 1 group Terkko giovanni GeschwindLab
  • Population structure, differential bias and genomic control in a large-scale, case-control association study
    Nature Genetics, Vol. 37, No. 11. (09 October 2005), pp. 1243-1246.
    by David G Clayton, Neil M Walker, Deborah J Smyth, Rebecca Pask, Jason D Cooper, Lisa M Maier, Luc J Smink, Alex C Lam, Nigel R Ovington, Helen E Stevens, Sarah Nutland, Joanna MM Howson, Malek Faham, Martin Moorhead, Hywel B Jones, Matthew Falkowski, Paul Hardenbol, Thomas D Willis, John A Todd
    posted to association method population structure by ccots on 2006-08-18 16:40:53 as read along with 1 person vplagnol
  • Moving towards individualized medicine with pharmacogenomics.
    Nature, Vol. 429, No. 6990. (27 May 2004), pp. 464-468.
    by WE Evans, MV Relling
    posted to pharmacogenetics variation by ccots on 2006-08-04 17:12:21 as read along with 1 person psique
  • Why Do Hubs Tend to Be Essential in Protein Networks?
    PLoS Genetics, Vol. 2, No. 6. (1 June 2006), e88.
    by Xionglei He, Jianzhi Zhang
    posted to network ppi variation by ccots on 2006-06-30 18:22:13 as ** along with 4 people and 1 group cmm dquest entropy mmt FAB-lab
  • Allele-Specific KRT1 Expression Is a Complex Trait
    PLoS Genetics, Vol. 2, No. 6. (1 June 2006), e93.
    by Heng Tao, David R Cox, Kelly A Frazer
    posted to cis-elements expression variation by ccots on 2006-06-30 18:19:35 as **** along with 4 people and 1 group dpollard RMGraze emarker mimulus_99 RockmanLab
  • Identification of QTLs controlling gene expression networks defined a priori
    BMC Bioinformatics, Vol. 7 (16 June 2006), 308.
    by Daniel J Kliebenstein, Marilyn AL West, Hans van Leeuwen, Olivier Loudet, RW Doerge, Dina
    posted to arrays eqtl network by ccots on 2006-06-28 16:32:50 as **** along with 2 people natstreet caseybrown
  • Inverse gene expression patterns for macrophage activating hepatotoxicants and peroxisome proliferators in rat liver.
    Biochem Pharmacol, Vol. 67, No. 11. (1 June 2004), pp. 2141-2165.
    by M McMillian, AY Nie, JB Parker, A Leone, M Kemmerer, S Bryant, J Herlich, L Yieh, A Bittner, X Liu, J Wan, MD Johnson
    posted to expression specificity tissue toxicology by ccots on 2006-06-26 23:15:49 as ***
  • Development of a toxicogenomics invitro assay for the efficient characterization of compounds
    Pharmacogenomics, Vol. 7, No. 2. (March 2006), pp. 177-186.
    by Yang, Yi, Abel, J Stephen, Ciurlionis, Rita, Waring, F Jeffrey
    posted to assay expression platform toxicogenomics by ccots on 2006-06-26 23:14:45 as ** along with 1 person jdiggans
  • Protein expression analysis of drug-mediated hepatotoxicity in the Sprague-Dawley rat.
    Proteomics, Vol. 2, No. 11. (November 2002), pp. 1577-1585.
    by WJ Man, IR White, D Bryant, P Bugelski, P Camilleri, P Cutler, G Heald, PG Lord, J Wood, K Kramer
    posted to proteomics rat toxicology by ccots on 2006-06-26 23:11:20 as **
  • Unique gene expression patterns in liver and kidney associated with exposure to chemical toxicants.
    J Pharmacol Exp Ther, Vol. 297, No. 3. (June 2001), pp. 895-905.
    by MJ Bartosiewicz, D Jenkins, S Penn, J Emery, A Buckpitt
    posted to arrays expression homeostasis toxicology by ccots on 2006-06-26 23:10:11 as **
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