ccr's library [46 articles]

Recent papers added to ccr's library.

	Plat-E: an efficient and stable system for transient packaging of retroviruses. [My Copy] Gene Ther, Vol. 7, No. 12. (June 2000), pp. 1063-1066. by S. Morita, T. Kojima, T. Kitamura posted to retroviruses by ccr on 2007-02-22 21:45:18 as
	High-resolution methylation analysis of the human hypoxanthine phosphoribosyltransferase gene 5' region on the active and inactive X chromosomes: correlation with binding sites for transcription factors. [My Copy] Mol Cell Biol, Vol. 14, No. 2. (February 1994), pp. 1419-1430. by I. K. Hornstra, T. P. Yang posted to no-tag by ccr on 2007-02-22 21:14:01 as
	A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands. [My Copy] Proc Natl Acad Sci U S A, Vol. 89, No. 5. (1 March 1992), pp. 1827-1831. by M. Frommer, L. E. McDonald, D. S. Millar, et al.C. M. Collis, F. Watt, G. W. Grigg, P. L. Molloy, C. L. Paul posted to bisulfite-genomic-sequencing by ccr on 2007-02-22 21:10:44 as along with 3 people daforerog saru jo_davies
	Bisulfite genomic sequencing: systematic investigation of critical experimental parameters. [My Copy] Nucleic Acids Res, Vol. 29, No. 13. (1 July 2001) by C. Grunau, S. J. Clark, A. Rosenthal posted to bisulfite-genomic-sequencing by ccr on 2007-02-22 20:56:39 as
	Fbx15 is a novel target of Oct3/4 but is dispensable for embryonic stem cell self-renewal and mouse development. [My Copy] Mol Cell Biol, Vol. 23, No. 8. (April 2003), pp. 2699-2708. by Y. Tokuzawa, E. Kaiho, M. Maruyama, et al.K. Takahashi, K. Mitsui, M. Maeda, H. Niwa, S. Yamanaka posted to stem-cells by ccr on 2007-02-22 20:17:00 as along with 1 person miguel
	Induction of Pluripotent Stem Cells from Mouse Embryonic and Adult Fibroblast Cultures by Defined Factors. [My Copy] Cell (8 August 2006) by Kazutoshi Takahashi, Shinya Yamanaka posted to stem-cells by ccr on 2007-02-22 16:34:27 as along with 8 people and 2 groups Jphil guhjy nickluscombe maldi faisalm maximilianh dvaidpz thenose EBI-regulation CHAOTO
	A unique and universal molecular barcode array [My Copy] Nature Methods, Vol. 3, No. 8. (21 July 2006), pp. 601-603. by Sarah E. Pierce, Eula L. Fung, Daniel F. Jaramillo, et al.Angela M. Chu, Ronald W. Davis, Corey Nislow, Guri Giaever posted to no-tag by ccr on 2007-02-21 21:42:32 as along with 2 people maldi raiyar
	High-throughput mapping of the chromatin structure of human promoters [My Copy] Nat Biotech, Vol. 25, No. 2. (February 2007), pp. 244-248. by Fatih Ozsolak, Jun S. Song, Shirley X. Liu, David E. Fisher posted to chromatin by ccr on 2007-02-18 08:00:18 as along with 8 people and 2 groups hagechouchin443 emptyhb jimeet guhjy aalibes jfr dchughes vega G4ID Genetics-of-Gambling
	Continuous Time Bayesian Networks [My Copy] In Proceedings of the Eighteenth Conference on Uncertainty in Artificial Intelligence (2002), pp. 378-387. by U. Nodelman, C. R. Shelton, D. Koller posted to bayesian by ccr on 2007-02-16 01:44:05 as
	Capturing Chromosome Conformation [My Copy] Science, Vol. 295, No. 5558. (15 February 2002), pp. 1306-1311. by Job Dekker, Karsten Rippe, Martijn Dekker, Nancy Kleckner posted to 3c by ccr on 2007-02-13 23:58:53 as along with 2 people and 1 group christoffpale skoch3 Koch_Lab
	A Genetic Screen Implicates miRNA-372 and miRNA-373 As Oncogenes in Testicular Germ Cell Tumors [My Copy] Cell, Vol. 124, No. 6. (24 March 2006), pp. 1169-1181. by Mathijs P. Voorhoeve, Le, Mariette Schrier, et al.Ad J. Gillis, Hans Stoop, Remco Nagel, Ying-Poi Liu, Josyanne van Duijse, Jarno Drost, Alexander Griekspoor posted to genetic oncogene by ccr on 2007-02-13 23:04:02 as along with 5 people and 2 groups tardigrade dchughes balabu 3times3 maralena G4ID Genetics-of-Gambling
	High throughput fingerprint analysis of large-insert clones. [My Copy] Genome Res, Vol. 7, No. 11. (November 1997), pp. 1072-1084. by M. A. Marra, T. A. Kucaba, N. L. Dietrich, et al.E. D. Green, B. Brownstein, R. K. Wilson, K. M. McDonald, L. W. Hillier, J. D. McPherson, R. H. Waterston posted to clones fingerprint high-throughput by ccr on 2007-02-12 23:11:52 as
	A Direct Approach to False Discovery Rates [My Copy] by John D. Storey posted to significance by ccr on 2007-02-12 20:52:29 as
	Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing [My Copy] by Yoav Benjamini, Yosef Hochberg posted to multiple-testing significance by ccr on 2007-02-12 20:49:34 as along with 27 people and 3 groups lwaldron polivares brianb ucbcjbm jfr xingxu emptyhb renewang Yanno sdvillal druvus natstreet czeller guhjy RMGraze oannes vplagnol frohike grahamc shigepong axelon ugengma amsantos rschulz dragonrez isimpson vertikalist Bioinformatics Regulomics_UCHSC BTS-PT-AS-CS
	Significance analysis of microarrays applied to the ionizing radiation response. [My Copy] Proc Natl Acad Sci U S A, Vol. 98, No. 9. (24 April 2001), pp. 5116-5121. by V. G. Tusher, R. Tibshirani, G. Chu posted to microarray significance by ccr on 2007-02-12 20:46:33 as along with 18 people ipark-kaist bertelsen daforerog marboe roys ihpark bassene frohike paszkows miguel jen_drake gpalidwor olympos incovoma ugengma shikin askrajiv renatomilani
	Clustering by Passing Messages Between Data Points. [My Copy] Science (11 January 2007) by Brendan J J. Frey, Delbert Dueck posted to clustering affinity-propagation by ccr on 2007-02-09 21:52:27 as along with 33 people and 1 group babakap sen_cheng davidecellai zibuyu ilyashl trutat1 sfuniak doitian kuhn xtizon jfr jmeppley stevedebacker arjen sterovetta sdvillal nickluscombe rdiaz ianturton macle bluto rsantana grahamc hexuming worldsun dimatura paulovn daniel51 matjes johnkork XIANG iris_2001 soundray EBI-regulation
	A Bayesian Analysis of Some Nonparametric Problems [My Copy] The Annals of Statistics, Vol. 1, No. 2. (1973), pp. 209-230. by Thomas S. Ferguson posted to nonparametric dirichlet bayesian by ccr on 2007-02-07 22:05:33 as along with 7 people oyen bertelsen rpadams mshafiei bayes ichbins81 abellogin
	High-resolution computational models of genome binding events [My Copy] Nature Biotechnology, Vol. 24, No. 8. (09 August 2006), pp. 963-970. by Yuan Qi, Alex Rolfe, Kenzie D. Macisaac, et al.Georg K. Gerber, Dmitry Pokholok, Julia Zeitlinger, Timothy Danford, Robin D. Dowell, Ernest Fraenkel, Tommi S. Jaakkola, Richard A. Young, David K. Gifford posted to genome computational binding by ccr on 2007-02-07 15:21:25 as along with 6 people and 1 group siebert Stew jfr wnpx caseybrown inesdesantiago Bioinformatics - CRUK
	Coordinated binding of NF-kappaB family members in the response of human cells to lipopolysaccharide. [My Copy] Proc Natl Acad Sci U S A (4 April 2006) by Joerg Schreiber, Richard G G. Jenner, Heather L L. Murray, Georg K K. Gerber, David K K. Gifford, Richard A A. Young posted to no-tag by ccr on 2007-02-07 14:57:02 as along with 3 people caseybrown postrational nirfriedman
	Accurate and reliable high-throughput detection of copy number variation in the human genome [My Copy] Genome Res., Vol. 16, No. 12. (1 December 2006), pp. 1566-1574. by Heike Fiegler, Richard Redon, Dan Andrews, et al.Carol Scott, Robert Andrews, Carol Carder, Richard Clark, Oliver Dovey, Peter Ellis, Lars Feuk, Lisa French, Paul Hunt, Dimitrios Kalaitzopoulos, James Larkin, Lyndal Montgomery, George H. Perry, Bob W. Plumb, Keith Porter, Rachel E. Rigby, Diane Rigler, Armand Valsesia, Cordelia Langford, Sean J. Humphray, Stephen W. Scherer, Charles Lee, Matthew E. Hurles, Nigel P. Carter posted to variation method genome by ccr on 2007-02-06 15:42:31 as along with 7 people and 4 groups jfr balicea dchughes mgaldzic shigepong colinveal debasis Bioinformatics G4ID CHIP Genetics-of-Gambling
	Structural variation in the human genome [My Copy] Nature Reviews Genetics, Vol. 7, No. 2., pp. 85-97. by Lars Feuk, Andrew R. Carson, Stephen W. Scherer posted to variation genome by ccr on 2007-02-06 15:20:55 as along with 23 people and 11 groups baizhang APRegier Neeperando xingxu daforerog psique Zephyrus dlobo jandot cgreal balajis bala balicea dchughes tabu darcyduke adepace AaronDarling rdiaz massivemayhem cat_worth jmrivort Lip GEB CGREL structural_bioinformatics Bioinformatics EisenLab SFX-Verde-team-MITLibraries G4ID G-quadruplex Supramolecular DictyosteliumGroup Genetics-of-Gambling
	Global variation in copy number in the human genome [My Copy] Nature, Vol. 444, No. 7118. (23 November 2006), pp. 444-454. by Richard Redon, Shumpei Ishikawa, Karen R. Fitch, et al.Lars Feuk, George H. Perry, Daniel T. Andrews, Heike Fiegler, Michael H. Shapero, Andrew R. Carson, Wenwei Chen, Eun K. Cho, Stephanie Dallaire, Jennifer L. Freeman, Juan R. Gonzalez, Monica Gratacos, Jing Huang, Dimitrios Kalaitzopoulos, Daisuke Komura, Jeffrey R. Macdonald, Christian R. Marshall, Rui Mei, Lyndal Montgomery, Kunihiro Nishimura, Kohji Okamura, Fan Shen, Martin J. Somerville, Joelle Tchinda, Armand Valsesia, Cara Woodwark, Fengtang Yang, Junjun Zhang, Tatiana Zerjal, Jane Zhang, Lluis Armengol, Donald F. Conrad, Xavier Estivill, Chris Tyler-Smith, Nigel P. Carter, Hiroyuki Aburatani, Charles Lee, Keith W. Jones, Stephen W. Scherer, Matthew E. Hurles posted to variation genome by ccr on 2007-02-06 14:50:55 as along with 34 people and 7 groups turnersd guhjy daforerog noushin Glires ivanek waszak jo_davies psique bpb jfr balajis pradiptaray dpollard mtagaya adepace aswin rdiaz qfwills ealloza vplagnol giovanni jeremymiller frohike vpschulz raiyar ramensky azazello dbgrant colinveal xingxu srp33 Ema daed parkinson's disease references Bioinformatics EisenLab BioinfoCIPF GeschwindLab steinmetzlab MBLAB
	Old and new matrix algebra useful for statistics [My Copy] (1997) by T. Minka posted to statistics linear-algebra by ccr on 2007-02-04 21:01:19 as along with 1 person daniel51
	Modularity and Dynamics of Cellular Networks [My Copy] PLoS Computational Biology, Vol. 2, No. 12. (1 December 2006), e174. by Yuan Qi, Hui Ge posted to networks computational by ccr on 2007-02-03 19:05:49 as along with 8 people daforerog druvus giovenko joshuashen grahamc massivemayhem fishtank roys
	ARACHNE: A Whole-Genome Shotgun Assembler [My Copy] Genome Res., Vol. 12, No. 1. (1 January 2002), pp. 177-189. by Serafim Batzoglou, David B. Jaffe, Ken Stanley, et al.Jonathan Butler, Sante Gnerre, Evan Mauceli, Bonnie Berger, Jill P. Mesirov, Eric S. Lander posted to no-tag by ccr on 2007-02-02 23:19:09 as along with 11 people and 3 groups natstreet dakelley bpb dayjm balajis indigoviolet balicea azazello wenhan tpreeprem Neeperando EisenLab MBLAB gatech-compgenomics
	Biomedical discovery with DNA arrays. [My Copy] Cell, Vol. 102, No. 1. (7 July 2000), pp. 9-15. by R. A. Young posted to microarray by ccr on 2007-02-02 21:34:07 as along with 1 person textoris
	A Hox Regulatory Network Establishes Motor Neuron Pool Identity and Target-Muscle Connectivity [My Copy] Cell, Vol. 123, No. 3. (4 November 2005), pp. 477-491. by Jeremy S. Dasen, Bonnie C. Tice, Susan Brenner-Morton, Thomas M. Jessell posted to transcriptional-regulatory-network motor-neuron hox by ccr on 2007-02-02 20:55:34 as
	A genomic regulatory network for development. [My Copy] Science, Vol. 295, No. 5560. (1 March 2002), pp. 1669-1678. by E. H. Davidson, J. P. Rast, P. Oliveri, et al.A. Ransick, C. Calestani, C. H. Yuh, T. Minokawa, G. Amore, V. Hinman, C. Arenas-Mena, O. Otim, C. T. Brown, C. B. Livi, P. Y. Lee, R. Revilla, A. G. Rust, Z. Pan, M. J. Schilstra, P. J. Clarke, M. I. Arnone, L. Rowen, R. A. Cameron, D. R. McClay, L. Hood, H. Bolouri posted to transcriptional-regulatory-network development by ccr on 2007-02-02 20:52:44 as along with 8 people and 2 groups dlobo balajis adepace margaritis lusk edvin dquest lukaswindhager GEB EisenLab
	Modeling transcriptional regulatory networks [My Copy] BioEssays, Vol. 24, No. 12. (2002), pp. 1118-1129. by Hamid Bolouri, Eric H. Davidson posted to transcriptional-regulatory-network modeling by ccr on 2007-02-02 20:43:45 as
	Mutant-specific gene programs in the zebrafish. [My Copy] Blood, Vol. 106, No. 2. (15 July 2005), pp. 521-530. by G. J. Weber, S. E. Choe, K. A. Dooley, N. N. Paffett-Lugassy, Y. Zhou, L. I. Zon posted to zebrafish mutant microarray hematopoiesis by ccr on 2007-02-02 20:41:58 as
	Transcriptional regulation of hematopoietic stem cell development in zebrafish. [My Copy] Exp Hematol, Vol. 33, No. 9. (September 2005), pp. 1007-1014. by N. Hsia, L. I. Zon posted to zebrafish stem-cell hematopoiesis by ccr on 2007-02-02 20:40:51 as
	Use of the zebrafish system to study primitive and definitive hematopoiesis. [My Copy] Annu Rev Genet, Vol. 39 (2005), pp. 481-501. by J. L. de Jong, L. I. Zon posted to zebrafish hematopoiesis by ccr on 2007-02-02 20:39:40 as
	The 'definitive' (and 'primitive') guide to zebrafish hematopoiesis. [My Copy] Oncogene, Vol. 23, No. 43. (20 September 2004), pp. 7233-7246. by A. J. Davidson, L. I. Zon posted to zebrafish hematopoiesis by ccr on 2007-02-02 20:38:35 as
	Insights into early vasculogenesis revealed by expression of the ETS-domain transcription factor Fli-1 in wild-type and mutant zebrafish embryos [My Copy] Mechanisms of Development, Vol. 90, No. 2. (1 February 2000), pp. 237-252. by Louise A. Brown, Adam R. Rodaway, Thomas F. Schilling, et al.Trevor Jowett, Philip W. Ingham, Roger K. Patient, Andrew D. Sharrocks posted to zebrafish vasculogenesis fli-1 by ccr on 2007-02-02 20:37:24 as
	Stem cells, cancer, and cancer stem cells [My Copy] Nature, Vol. 414, No. 6859. (1 November 2001), pp. 105-111. by Tannishtha Reya, Sean J. Morrison, Michael F. Clarke, Irving L. Weissman posted to stem-cells cancer by ccr on 2007-02-02 20:35:11 as along with 6 people catcremona eisei iskanbasal faisalm martello7 vjuneja
	Open source clustering software. [My Copy] Bioinformatics, Vol. 20, No. 9. (12 June 2004), pp. 1453-1454. by M. J. de Hoon, S. Imoto, J. Nolan, S. Miyano posted to no-tag by ccr on 2007-02-02 20:33:26 as along with 23 people and 7 groups klexa oteri arlam ilyashl matterhorn cswinburne mtagaya macowell davidbroadhurst eme oilcan rahul Ayest balajis piscinero metamerist digisoki wnpx rafamayo atopcu calu karlmicha chad_davis Structural Biology Group TorVergata Fluid-Mechanics-and-Thermal-Science-Research astro SRL Computational_Systems_Biology XMLDataManagement BUiGEM
	Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset. [My Copy] Genome Biol, Vol. 6, No. 2. (2005) by S. E. Choe, M. Boutros, A. M. Michelson, G. M. Church, M. S. Halfon posted to no-tag by ccr on 2007-02-02 20:32:12 as along with 8 people and 1 group bertelsen lwaldron heliopais xwbcn jeremymiller ghattem waszak daforerog GeschwindLab
	A clonogenic common myeloid progenitor that gives rise to all myeloid lineages. [My Copy] Nature, Vol. 404, No. 6774. (9 March 2000), pp. 193-197. by K. Akashi, D. Traver, T. Miyamoto, I. L. Weissman posted to no-tag by ccr on 2007-02-02 20:31:15 as
	Transformation from committed progenitor to leukaemia stem cell initiated by MLLâAF9 [My Copy] Nature, Vol. 442, No. 7104. (16 July 2006), pp. 818-822. by Andrei V. Krivtsov, David Twomey, Zhaohui Feng, et al.Matthew C. Stubbs, Yingzi Wang, Joerg Faber, Jason E. Levine, Jing Wang, William C. Hahn, Gary D. Gilliland, Todd R. Golub, Scott A. Armstrong posted to stem-cell mouse microarray hematopoiesis by ccr on 2007-02-02 20:24:33 as along with 2 people kmbernt kentsis
	Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. [My Copy] Science, Vol. 285, No. 5429. (6 August 1999), pp. 901-906. by E. A. Winzeler, D. D. Shoemaker, A. Astromoff, et al.H. Liang, K. Anderson, B. Andre, R. Bangham, R. Benito, J. D. Boeke, H. Bussey, A. M. Chu, C. Connelly, K. Davis, F. Dietrich, S. W. Dow, M. El Bakkoury, F. Foury, S. H. Friend, E. Gentalen, G. Giaever, J. H. Hegemann, T. Jones, M. Laub, H. Liao, N. Liebundguth, D. J. Lockhart, A. Lucau-Danila, M. Lussier, N. M'Rabet, P. Menard, M. Mittmann, C. Pai, C. Rebischung, J. L. Revuelta, L. Riles, C. J. Roberts, P. Ross-MacDonald, B. Scherens, M. Snyder, S. Sookhai-Mahadeo, R. K. Storms, S. Véronneau, M. Voet, G. Volckaert, T. R. Ward, R. Wysocki, G. S. Yen, K. Yu, K. Zimmermann, P. Philippsen, M. Johnston, R. W. Davis posted to genome yeast by ccr on 2007-02-02 19:51:57 as along with 8 people mmcclean pcahan1 balajis jpoyatos cjeans jiny chasmand hryk
	Hierarchical Dirichlet Processes [My Copy] Journal of the American Statistical Association, Vol. 101, No. 476. (December 2006), pp. 1566-1581. by Teh, Yee Whye, Jordan, et al.I. Michael, Beal, J. Matthew, Blei, M. David posted to nonparametric mixture-model markov-chain-monte-carlo hierarchical clustering bayesian by ccr on 2007-02-02 16:09:06 as along with 8 people bertelsen bsilverthorn mshafiei vlachmore markusd asterix77 bhaddow abrentnall
	Modeling individual differences using Dirichlet processes [My Copy] Journal of Mathematical Psychology In Special Issue on Model Selection: Theoretical Developments and Applications, Vol. 50, No. 2. (April 2006), pp. 101-122. by Daniel J. Navarro, Thomas L. Griffiths, Mark Steyvers, Michael D. Lee posted to dirichlet by ccr on 2007-02-02 16:04:13 as along with 5 people oyen bsilverthorn flavian_vasile briordan vlachmore
	Co-evolution of transcriptional and post-translational cell-cycle regulation [My Copy] Nature (27 September 2006) by Lars J. Jensen, Thomas S. Jensen, Ulrik de Lichtenberg, Søren Brunak, Peer Bork posted to no-tag by ccr on 2007-02-02 15:58:44 as along with 7 people and 1 group JAShapiro adepace koller olympos cjeans kluck larsjuhljensen EisenLab
	Validation and refinement of gene-regulatory pathways on a network of physical interactions. [My Copy] Genome Biol, Vol. 6, No. 7. (2005) by C. H. Yeang, H. C. Mak, S. McCuine, C. Workman, T. Jaakkola, T. Ideker posted to no-tag by ccr on 2007-02-02 15:51:30 as along with 14 people and 1 group kaarsinogen isimpson hplatero snuppepuppan abhik tmmurali textoris wnpx noano koller cdppublications AlexanderPico carlk jago CDP
	Modulefinder: a tool for computational discovery of cis regulatory modules. [My Copy] Pac Symp Biocomput (2005), pp. 519-530. by A. A. Philippakis, F. S. He, M. L. Bulyk posted to no-tag by ccr on 2007-02-02 15:44:45 as along with 2 people and 1 group wowalz indigoviolet EisenLab
	Hierarchical Beta Processes and the Indian Buffet Process [My Copy] by Romain Thibaux, Michael I. Jordan posted to process machine learning indian hierarchical buffet by ccr on 2007-02-02 15:33:13 as

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