cdallett's library 41 articles Export

	IntNetDB v1.0: An integrated protein-protein interaction network database generated by a probabilistic model [My Copy] BMC Bioinformatics, Vol. 7 (18 November 2006), 508. by Kai Xia, Dong Dong, Jing-Dong J. Han posted to analysis pathway by cdallett on 2007-06-21 01:00:27 as along with 3 people wnpx nedwards maralena
	Toward the automated generation of genome-scale metabolic networks in the SEED [My Copy] BMC Bioinformatics, Vol. 8 (26 April 2007), 139. by Matthew Dejongh, Kevin Formsma, Paul Boillot, John Gould, Matthew Rycenga, Aaron Best posted to pathway by cdallett on 2007-06-18 22:22:36 as along with 2 people antonkratz stajich
	Prediction of missing enzyme genes in a bacterial metabolic network: Reconstruction of the lysine-degradation pathway of Pseudomonas aeruginosa [My Copy] FEBS Journal, Vol. 274, No. 9. (May 2007), pp. 2262-2273. by Yamanishi, Yoshihiro, Mihara, et al. Hisaaki, Osaki, Motoharu, Muramatsu, Hisashi, Esaki, Nobuyoshi, Sato, Tetsuya, Hizukuri, Yoshiyuki, Goto, Susumu, Kanehisa, Minoru posted to pathway by cdallett on 2007-06-18 22:19:20 as along with 2 people kuhn shung
	Estimating the annotation error rate of curated GO database sequence annotations [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007) by Craig Jones, Alfred Brown, Ute Baumann posted to go by cdallett on 2007-06-18 22:14:18 as along with 3 people and 1 group yas grahamc sgoetz T_lab
	Practical and theoretical advances in predicting the function of a protein by its phylogenetic distribution. [My Copy] J R Soc Interface (29 May 2007) by Philip R R. Kensche, Vera van Noort, Bas E E. Dutilh, Martijn A A. Huynen posted to analysis pathway by cdallett on 2007-06-18 21:56:30 as along with 1 person kiekyon
	Host-microbe interactions: shaping the evolution of the plant immune response. [My Copy] Cell, Vol. 124, No. 4. (24 February 2006), pp. 803-814. by S. T. Chisholm, G. Coaker, B. Day, B. J. Staskawicz posted to tir domains by cdallett on 2007-02-01 23:02:07 as along with 4 people and 2 groups mattjb saru jess_m talponer ComplexAdaptiveSystems DSTO-CAS
	Plant disease-resistance proteins and the gene-for-gene concept. [My Copy] Trends Biochem Sci, Vol. 23, No. 12. (December 1998), pp. 454-456. by E. A. Van der Biezen, J. D. Jones posted to tir domains by cdallett on 2007-02-01 22:54:43 as along with 1 person jess_m
	X-ray crystal structure of the Fe-only hydrogenase (CpI) from Clostridium pasteurianum to 1.8 angstrom resolution. [My Copy] Science, Vol. 282, No. 5395. (4 December 1998), pp. 1853-1858. by J. W. Peters, W. N. Lanzilotta, B. J. Lemon, L. C. Seefeldt posted to thioredoxin_related by cdallett on 2007-02-01 19:33:53 as
	Phylogenetic inference in protein superfamilies: analysis of SH2 domains. [My Copy] Proc Int Conf Intell Syst Mol Biol, Vol. 6 (1998), pp. 165-174. by K. Sjölander posted to phylogeny by cdallett on 2007-01-09 21:10:38 as
	The secreted effector protein of Salmonella dublin, SopA, is translocated into eukaryotic cells and influences the induction of enteritis. [My Copy] Cell Microbiol, Vol. 2, No. 4. (August 2000), pp. 293-303. by M. W. Wood, M. A. Jones, P. R. Watson, et al.A. M. Siber, B. A. McCormick, S. Hedges, R. Rosqvist, T. S. Wallis, E. E. Galyov posted to salmonella by cdallett on 2007-01-09 17:27:29 as
	SipA, SopA, SopB, SopD, and SopE2 Contribute to Salmonella enterica Serotype Typhimurium Invasion of Epithelial Cells [My Copy] Infect. Immun., Vol. 73, No. 1. (1 January 2005), pp. 146-154. by Manuela Raffatellu, Paul R. Wilson, Daniela Chessa, et al.Helene Andrews-Polymenis, Quynh T. Tran, Sara Lawhon, Sangeeta Khare, Garry L. Adams, Andreas J. Baumler posted to salmonella by cdallett on 2007-01-09 17:15:38 as
	Capsule-Mediated Immune Evasion: a New Hypothesis Explaining Aspects of Typhoid Fever Pathogenesis [My Copy] Infect. Immun., Vol. 74, No. 1. (1 January 2006), pp. 19-27. by Manuela Raffatellu, Daniela Chessa, Paul R. Wilson, Cagla Tukel, Mustafa Akcelik, Andreas J. Baumler posted to salmonella by cdallett on 2007-01-09 16:57:53 as along with 1 person GX
	MOBILE GENETIC ELEMENTS: THE AGENTS OF OPEN SOURCE EVOLUTION [My Copy] Nat Rev Micro, Vol. 3, No. 9. (2005), pp. 722-732. by Laura S. Frost, Raphael Leplae, Anne O. Summers, Ariane Toussaint posted to transposon by cdallett on 2006-12-20 19:38:35 as along with 4 people orzenil rec3141 dakelley karfunkel
	Fungal secondary metabolism — from biochemistry to genomics [My Copy] Nature Reviews Microbiology, Vol. 3, No. 12., pp. 937-947. by Nancy P. Keller, Geoffrey Turner, Joan W. Bennett posted to clusters gene by cdallett on 2006-12-20 19:15:23 as along with 1 person Jporci
	Peptide-mediated interference of TIR domain dimerization in MyD88 inhibits interleukin-1-dependent activation of NF-kappaB. [My Copy] J Biol Chem, Vol. 280, No. 16. (22 April 2005), pp. 15809-15814. by M. Loiarro, C. Sette, G. Gallo, et al.A. Ciacci, N. Fantò, D. Mastroianni, P. Carminati, V. Ruggiero posted to domains tir by cdallett on 2006-11-21 23:25:48 as
	SIGIRR inhibits interleukin-1 receptor- and toll-like receptor 4-mediated signaling through different mechanisms. [My Copy] J Biol Chem, Vol. 280, No. 26. (1 July 2005), pp. 25233-25241. by J. Qin, Y. Qian, J. Yao, C. Grace, X. Li posted to domains tir by cdallett on 2006-11-21 23:24:33 as
	Interactive sites in the MyD88 Toll/interleukin (IL) 1 receptor domain responsible for coupling to the IL1beta signaling pathway. [My Copy] J Biol Chem, Vol. 280, No. 28. (15 July 2005), pp. 26152-26159. by C. Li, J. Zienkiewicz, J. Hawiger posted to domains tir by cdallett on 2006-11-21 23:23:01 as
	The interleukin 1 (IL-1) receptor accessory protein Toll/IL-1 receptor domain: analysis of putative interaction sites in vitro mutagenesis and molecular modeling. [My Copy] J Biol Chem, Vol. 278, No. 49. (5 December 2003), pp. 49145-49153. by J. Radons, S. Dove, D. Neumann, et al.R. Altmann, A. Botzki, M. U. Martin, W. Falk posted to domains tir by cdallett on 2006-11-21 23:20:58 as
	Quantitative exploration of the occurrence of lateral gene transfer by using nitrogen fixation genes as a case study [My Copy] PNAS, Vol. 103, No. 25. (20 June 2006), pp. 9584-9589. by Katherina J. Kechris, Jason C. Lin, Peter J. Bickel, Alexander N. Glazer posted to gene lateral transfer by cdallett on 2006-11-15 22:32:35 as along with 1 person bnchakraborty
	TIR, CARD and PYRIN: three domains for an antimicrobial triad [My Copy] Cell Death and Differentiation, Vol. aop, No. current. by C. Werts, S. E. Girardin, D. J. Philpott posted to domains tir by cdallett on 2006-11-15 19:14:02 as
	Intrinsic conformation of lipid A is responsible for agonistic and antagonistic activity [My Copy] Eur J Biochem, Vol. 267, No. 10. (15 May 2000), pp. 3032-3039. by Ulrich Seydel, Masato Oikawa, Koichi Fukase, Shoichi Kusumoto, Klaus Brandenburg posted to domains tir by cdallett on 2006-11-10 00:34:56 as
	Postgenomic Approach To Identify Novel Mycobacterium leprae Antigens with Potential To Improve Immunodiagnosis of Infection [My Copy] Infect. Immun., Vol. 73, No. 9. (1 September 2005), pp. 5636-5644. by Annemieke Geluk, Michel R. Klein, Kees L. Franken, et al.Krista E. van Meijgaarden, Brigitte Wieles, Kelly C. Pereira, Samira Buhrer-Sekula, Paul R. Klatser, Patrick J. Brennan, John S. Spencer, Diana L. Williams, Maria C. Pessolani, Elizabeth P. Sampaio, Tom H. Ottenhoff posted to tb by cdallett on 2006-11-01 23:31:19 as
	Whole-Genome Comparison of Mycobacterium tuberculosis Clinical and Laboratory Strains [My Copy] J. Bacteriol., Vol. 184, No. 19. (1 October 2002), pp. 5479-5490. by R. D. Fleischmann, D. Alland, J. A. Eisen, et al.L. Carpenter, O. White, J. Peterson, R. Deboy, R. Dodson, M. Gwinn, D. Haft, E. Hickey, J. F. Kolonay, W. C. Nelson, L. A. Umayam, M. Ermolaeva, S. L. Salzberg, A. Delcher, T. Utterback, J. Weidman, H. Khouri, J. Gill, A. Mikula, W. Bishai, W. R. Jacobs, J. C. Venter, C. M. Fraser posted to tb by cdallett on 2006-11-01 22:38:41 as along with 2 people lewista druvus
	Molecular Characteristics and Global Spread of Mycobacterium tuberculosis with a Western Cape F11 Genotype [My Copy] J. Clin. Microbiol., Vol. 42, No. 2. (1 February 2004), pp. 769-772. by Thomas C. Victor, Petra E. de Haas, Annemarie M. Jordaan, et al.Gian D. van der Spuy, Madalene Richardson, D. van Soolingen, Paul D. van Helden, Robin Warren posted to tb by cdallett on 2006-11-01 22:34:23 as
	PATHOGENIC ESCHERICHIA COLI [My Copy] Nat Rev Micro, Vol. 2, No. 2. (February 2004), pp. 123-140. by James B. Kaper, James P. Nataro, Harry L. Mobley posted to tir by cdallett on 2006-10-28 23:39:54 as
	Identification and characterization of a novel bacterial virulence factor that shares homology with mammalian Toll/interleukin-1 receptor family proteins. [My Copy] Infect Immun, Vol. 74, No. 1. (January 2006), pp. 594-601. by R. M. Newman, P. Salunkhe, A. Godzik, J. C. Reed posted to function protein by cdallett on 2006-10-26 16:15:17 as
	Origin and evolution of eukaryotic apoptosis: the bacterial connection. [My Copy] Cell Death Differ, Vol. 9, No. 4. (April 2002), pp. 394-404. by E. V. Koonin, L. Aravind posted to function protein by cdallett on 2006-10-25 22:19:51 as
	Subfamily hmms in functional genomics. [My Copy] Pac Symp Biocomput (2005), pp. 322-333. by D. Brown, N. Krishnamurthy, J. M. Dale, W. Christopher, K. Sjölander posted to function protein by cdallett on 2006-10-25 21:19:48 as along with 1 person barry2
	Automated protein function prediction--the genomic challenge. [My Copy] Briefings in bioinformatics, Vol. 7, No. 3. (23 September 2006), pp. 225-242. by I. Friedberg posted to function protein by cdallett on 2006-10-25 21:18:00 as along with 12 people and 3 groups michaelbarton kiekyon MarcoAlvarez Keywan idoerg shung tjimenez yas marcius j3xucite sgoetz bootsy T_lab BioinfoCIPF SGU-CIPF
	The Universal Protein Resource (UniProt): an expanding universe of protein information. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006) by C. H. Wu, R. Apweiler, A. Bairoch, et al.D. A. Natale, W. C. Barker, B. Boeckmann, S. Ferro, E. Gasteiger, H. Huang, R. Lopez, M. Magrane, M. J. Martin, R. Mazumder, C. O'Donovan, N. Redaschi, B. Suzek posted to function protein by cdallett on 2006-10-25 21:17:32 as along with 8 people niallhaslam sgoetz BragilMassoud miguel anwazo dgront Haggan cjeans
	A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. [My Copy] Systematic biology, Vol. 52, No. 5. (October 2003), pp. 696-704. by S. Guindon, O. Gascuel posted to function protein by cdallett on 2006-10-25 21:15:52 as along with 13 people and 1 group chica calderonv swp09 oceanwind BioNica druvus bpb chrn aprasad lyongu treangen Haggan Auger Dead 60's
	SATCHMO: sequence alignment and tree construction using hidden Markov models [My Copy] Bioinformatics, Vol. 19, No. 11. (22 July 2003), pp. 1404-1411. by Robert C. Edgar, Kimmen Sjolander posted to function protein by cdallett on 2006-10-25 21:14:43 as along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
	MUSCLE: a multiple sequence alignment method with reduced time and space complexity [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (19 August 2004), 113. by Robert Edgar posted to function protein by cdallett on 2006-10-25 21:14:19 as along with 30 people and 5 groups tomatoe45 rneches gwallau OscarLopez ivanffcc Helenita Joaquin kmma13 khlevy Pal tomjad mgomes hryk BioNica natstreet Md_2007 sebk wallacei knaseanka chrn jwm balajis gbart caporaso sriram_s sanchezbuelna timflutre gisle urgi Ema LabDros References for 3DSim paper Radiation_Damage Stressosome biomedical-nlp
	COACH: profile-profile alignment of protein families using hidden Markov models [My Copy] Bioinformatics, Vol. 20, No. 8. (22 May 2004), pp. 1309-1318. by Robert C. Edgar, Kimmen Sjolander posted to function protein by cdallett on 2006-10-25 21:13:16 as along with 1 person bpcusack
	DEMETER DNA glycosylase establishes MEDEA polycomb gene self-imprinting by allele-specific demethylation. [My Copy] Cell, Vol. 124, No. 3. (10 February 2006), pp. 495-506. by M. Gehring, J. H. Huh, T. F. Hsieh, et al.J. Penterman, Y. Choi, J. J. Harada, R. B. Goldberg, R. L. Fischer posted to demeter by cdallett on 2006-10-25 19:06:11 as
	PhyloFacts: An online structural phylogenomic encyclopedia for protein functional and structural classification [My Copy] Genome Biology, Vol. 7 (14 September 2006), R83. by Nandini Krishnamurthy, Duncan Brown, Dan Kirshner, Kimmen Sjolander posted to function protein by cdallett on 2006-10-24 21:31:08 as along with 2 people druvus Tingting
	Evolution of function in protein superfamilies, from a structural perspective [My Copy] Journal of Molecular Biology, Vol. 307, No. 4. (6 April 2001), pp. 1113-1143. by Annabel E. Todd, Christine A. Orengo, Janet M. Thornton posted to function protein by cdallett on 2006-10-24 05:29:55 as along with 10 people and 2 groups ucbcjbm flbarroso yuslinaz sgoetz ana kuhn tny sriram_s uz_labu_laimi sim82 structural_bioinformatics Bioinformatics
	Cognate Ligand Domain Mapping for Enzymes. [My Copy] J Mol Biol (20 September 2006) by Matthew Bashton, Irene Nobeli, Janet M M. Thornton posted to thornton by cdallett on 2006-10-20 01:16:16 as along with 3 people drastic massivemayhem grottenolm
	ET viewer: an application for predicting and visualizing functional sites in protein structures. [My Copy] Bioinformatics, Vol. 22, No. 16. (15 August 2006), pp. 2049-2050. by D. H. Morgan, D. M. Kristensen, D. Mittelman, O. Lichtarge posted to no-tag by cdallett on 2006-10-17 23:27:18 as
	Loopy Proteins Appear Conserved in Evolution [My Copy] Journal of Molecular Biology, Vol. 322, No. 1. (6 September 2002), pp. 53-64. by Jinfeng Liu, Hepan Tan, Burkhard Rost posted to no-tag by cdallett on 2006-08-25 02:22:04 as along with 3 people and 2 groups robfsouza ana pansapiens structural_bioinformatics Bioinformatics
	Long loops in proteins. [My Copy] Protein Eng, Vol. 8, No. 11. (November 1995), pp. 1093-1101. by A. C. Martin, K. Toda, H. J. Stirk, J. M. Thornton posted to no-tag by cdallett on 2006-08-25 02:19:35 as along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics

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function	11
protein	11
tir	9
domains	8
pathway	4
salmonella	3
tb	3
analysis	2
gene	2
clusters	1
demeter	1
go	1
lateral	1
phylogeny	1
thioredoxin_related	1
thornton	1
transfer	1
transposon	1

cdallett's library 41 articles Export

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