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cdppublications's library [86 articles]

Recent papers added to cdppublications's library.
  • The Per2 Negative Feedback Loop Sets the Period in the Mammalian Circadian Clock Mechanism
    PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e242.
    by Katharina A Wilkins, Paul I Barton, Bruce Tidor
    posted to cdp_center by cdppublications on 2008-01-31 17:41:28 as **
  • Making it stick: convection, reaction, and diffusion in surface based biosensors
    Nature Biotechnology (In Press)
    by TM Squires, RJ Messinger, SR Manalis
    posted to cdp_center by cdppublications on 2008-01-30 15:47:33 as **
  • TAZ promotes PC2 degradation through a SCFbeta-Trcp E3 ligase complex.
    Mol Cell Biol, Vol. 27, No. 18. (September 2007), pp. 6383-6395.
    by Y Tian, R Kolb, JH Hong, J Carroll, D Li, J You, R Bronson, MB Yaffe, J Zhou, T Benjamin
    posted to cdp_center by cdppublications on 2008-01-30 14:42:53 as **
  • Flexible Informatics for Linking Experimental Data to Mathemati-cal Models via DataRail.
    Bioinformatics (24 January 2008)
    by Julio Saez-Rodriguez, Arthur Goldsipe, Jeremy Muhlich, Leonidas G G Alexopoulos, Bjorn Millard, Douglas A A Lauffenburger, Peter K K Sorger
    posted to cdp_center by cdppublications on 2008-01-30 14:40:41 as ** along with 2 people jyuh GeeSharpMinor
  • Systematic discovery of in vivo phosphorylation networks.
    Cell, Vol. 129, No. 7. (29 June 2007), pp. 1415-1426.
    by R Linding, LJ Jensen, GJ Ostheimer, MA van Vugt, C Jørgensen, IM Miron, F Diella, K Colwill, L Taylor, K Elder, P Metalnikov, V Nguyen, A Pasculescu, J Jin, JG Park, LD Samson, JR Woodgett, RB Russell, P Bork, MB Yaffe, T Pawson
    posted to cdp_center by cdppublications on 2008-01-30 14:08:50 as ** along with 14 people and 2 groups chad_davis carlk daed Evangelia renatomilani jyuh skhadar julius zwang lp2 psique robrussell snowcrash larsjuhljensen SysbioMPI-TCells Durbin group
  • A methodology for the structural and functional analysis of signaling and regulatory networks.
    BMC Bioinformatics, Vol. 7, No. 1. (7 February 2006)
    by Steffen Klamt, Julio Saez-Rodriguez, Jonathan A Lindquist, Luca Simeoni, Ernst D Gilles
    posted to cdp_center by cdppublications on 2007-10-19 15:02:25 as ** along with 3 people and 1 group hryk maralena gokhan CDP
  • Signaling netwErks get the global treatment
    Genome Biology, Vol. 8 (01 February 2007), 202.
    by Michael B Yaffe, Forest M White
    posted to cdp_center by cdppublications on 2007-10-16 18:54:27 as **
  • 14-3-3σ controls mitotic translation to facilitate cytokinesis
    Nature, Vol. 446, No. 7133., pp. 329-332.
    by Erik W Wilker, Marcel ATM van Vugt, Steven A Artim, Paul H Huang, Christian P Petersen, Christian H Reinhardt, Yun Feng, Phillip A Sharp, Nahum Sonenberg, Forest M White, Michael B Yaffe
    posted to cdp_center by cdppublications on 2007-10-16 18:48:48 as **
  • Measuring the mass, density, and size of particles and cells using a suspended microchannel resonator
    Applied Physics Letters, Vol. 91, No. 12. (2007)
    by Michel Godin, Andrea K Bryan, Thomas P Burg, Ken Babcock, Scott R Manalis
    posted to cdp_center by cdppublications on 2007-10-12 15:58:25 as ** along with 1 person and 1 group skoch3 Koch_Lab
  • Quantitative analysis of EGFRvIII cellular signaling networks reveals a combinatorial therapeutic strategy for glioblastoma
    Proceedings of the National Academy of Sciences, Vol. 104, No. 31. (31 July 2007), pp. 12867-12872.
    by Paul H Huang, Akitake Mukasa, Rudy Bonavia, Ryan A Flynn, Zachary E Brewer, Webster K Cavenee, Frank B Furnari, Forest M White
    posted to cdp_center by cdppublications on 2007-10-12 15:55:11 as ** along with 1 person aheilbut
  • Cell proliferation during the early compartmentalization of the Xenopus laevis inner ear.
    Int J Dev Biol, Vol. 51, No. 3. (2007), pp. 201-209.
    by QA Quick, EE Serrano
    posted to cdp_center by cdppublications on 2007-10-12 13:00:44 as **
  • Tissue and Species Differences in the Application of Quantum Dots as Probes for Biomolecular Targets in the Inner Ear and Kidney
    Nanobioscience, IEEE Transactions on, Vol. 5, No. 4. (2006), pp. 251-262.
    by VB Knight, EE Serrano
    posted to cdp_center by cdppublications on 2007-10-12 12:51:36 as **
  • Concentration Polarization and Nonlinear Electrokinetic Flow near a Nanofluidic Channel
    Physical Review Letters, Vol. 99, No. 4. (2007)
    by Sung J Kim, Ying C Wang, Jeong H Lee, Hongchul Jang, Jongyoon Han
    posted to cdp_center by cdppublications on 2007-10-11 15:54:39 as ** along with 1 group CDP
  • Common effector processing mediates cell-specific responses to stimuli
    Nature (18 July 2007)
    by Kathryn Miller-Jensen, Kevin A Janes, Joan S Brugge, Douglas A Lauffenburger
    posted to apoptosis cdp_center cell_signalling tumor_necrosis_factor by cdppublications on 2007-08-08 17:05:33 as ** along with 2 people and 1 group jyuh dvaidpz CDP
  • Microfluidic device with integrated antibody arrays for cell signaling analysis
    Proceedings of the Ninth International Conference on Miniaturized Systems for Chemistry and Life Sciences (2005), pp. 388-390.
    by J El-Ali, S Gaudet, Murhpy, UB Nielsen, KF Jensen
    posted to cdp_center microfluidic_devices by cdppublications on 2007-07-10 21:22:50 as ** along with 1 group CDP
  • Suspended microchannel resonators for biomolecular detection
    Applied Physics Letters, Vol. 83, No. 13. (2003), pp. 2698-2700.
    by TP Burg, SR Manalis
    posted to cdp_center microchannel_resonator microfluidic_devices by cdppublications on 2007-07-10 21:16:04 as ** along with 1 group CDP
  • Rapid free flow isoelectric focusing via novel electrode structures.
    (2005), pp. 1537-1539.
    by J Albrecht, S Gaudet, KF Jensen
    posted to cdp_center isoelectric_focusing microfluidic_devices by cdppublications on 2007-07-10 21:06:19 as ** along with 1 group CDP
  • Patent Application: Isoelectric focusing systems and methods. MIT Case No.: 12421
    (22 June 2007)
    by JW Albrecht, KF Jensen
    posted to cdp_center patent by cdppublications on 2007-07-10 15:46:48 as ** along with 1 group CDP
  • A microfluidic electroporation device for cell lysis.
    Lab Chip, Vol. 5, No. 1. (January 2005), pp. 23-29.
    by H Lu, MA Schmidt, KF Jensen
    posted to cdp_center cells_on_chips microfluidic_devices by cdppublications on 2007-07-09 21:57:39 as ** along with 1 group CDP
  • A microfabricated device for subcellular organelle sorting.
    Anal Chem, Vol. 76, No. 19. (1 October 2004), pp. 5705-5712.
    by H Lu, S Gaudet, MA Schmidt, KF Jensen
    posted to cdp_center microfluidic_devices by cdppublications on 2007-07-02 19:43:32 as ** along with 1 group CDP
  • Microcarrier enabled microfluidic assays of anchorage dependant cells
    (2006), pp. 1486-1488.
    by J El-Ali, KF Jensen
    edited by T Kitamori, H Fujita, S Hasabe
    posted to cdp_center by cdppublications on 2007-07-02 19:38:38 as ** along with 1 group CDP
  • Cellular and Subcellular Analysis on Chip
    Lab-on-Chips for Cellomics (2005), pp. 273-298.
    by Hang Lu, Klavs Jensen
    posted to cdp_center microfluidic_devices by cdppublications on 2007-07-02 19:12:42 as ** along with 1 group CDP
  • Weighing of biomolecules, single cells and single nanoparticles in fluid
    Nature, Vol. 446, No. 7139., pp. 1066-1069.
    by Thomas P Burg, Michel Godin, Scott M Knudsen, Wenjiang Shen, Greg Carlson, John S Foster, Ken Babcock, Scott R Manalis
    posted to cdp_center mass_sensor microfluidic_devices by cdppublications on 2007-06-19 20:02:54 as ** along with 1 person and 1 group faisalm CDP
  • An Accurate Surface Formulation for Biomolecule Electrostatics in Non-Ionic Solutions
    Engineering in Medicine and Biology Society, 2005. IEEE-EMBS 2005. 27th Annual International Conference of the (2005), pp. 7591-7595.
    by MD Altman, JP Bardhan, JK White, B Tidor
    posted to cdp_center by cdppublications on 2007-06-12 20:36:25 as ** along with 1 group CDP
  • The Per2 negative feedback loop sets the period in the mammalian circadian clock mechanism
    PLoS Comp Bio (2007)
    by Katharina A Wilkins, Paul Barton, Bruce Tidor
    posted to biological_networks cdp_center circadian_rhythm sensitivity_analysis systems_biology by cdppublications on 2007-06-12 17:55:08 as ** along with 1 group CDP
  • Epi-allelic Erk1 and Erk2 knockdown series for quantitative analysis of T cell Erk regulation and IL-2 production
    Molecular Immunology, Vol. 44, No. 12. (May 2007), pp. 3085-3091.
    by Lucia Wille, Melissa L Kemp, Peter Sandy, Christina L Lewis, Douglas A Lauffenburger
    posted to cdp_center by cdppublications on 2007-06-11 21:34:57 as ** along with 1 group CDP
  • Design of Mutation-resistant HIV Protease Inhibitors with the Substrate Envelope Hypothesis.
    Chem Biol Drug Des, Vol. 69, No. 5. (May 2007), pp. 298-313.
    by S Chellappan, GS Kiran Kumar Reddy, A Ali, MN Nalam, SG Anjum, H Cao, V Kairys, MX Fernandes, MD Altman, B Tidor, TM Rana, CA Schiffer, MK Gilson
    posted to cdp_center by cdppublications on 2007-06-11 14:47:22 as ** along with 1 group CDP
  • A post-synaptic scaffold at the origin of the animal kingdom.
    PLoS ONE, Vol. 2 (2007)
    by O Sakarya, KA Armstrong, M Adamska, M Adamski, IF Wang, B Tidor, BM Degnan, TH Oakley, KS Kosik
    posted to cdp_center by cdppublications on 2007-06-11 14:46:39 as ** along with 1 group CDP
  • Modeling backbone flexibility to achieve sequence diversity: The design of novel alpha-helical ligands for Bcl-xL
    Journal of Molecular Biology, Vol. In Press, Accepted Manuscript
    by Xiaoran Fu, James R Apgar, Amy E Keating
    posted to cdp_center by cdppublications on 2007-06-08 20:12:34 as ** along with 1 group CDP
  • Time-resolved mass spectrometry of tyrosine phosphorylation sites in the epidermal growth factor receptor signaling network reveals dynamic modules.
    Mol Cell Proteomics, Vol. 4, No. 9. (September 2005), pp. 1240-1250.
    by Y Zhang, A Wolf-Yadlin, PL Ross, DJ Pappin, J Rush, DA Lauffenburger, FM White
    posted to cdp_center egfr mass_spectrometry by cdppublications on 2007-04-04 17:05:36 as ** along with 1 group CDP
  • Validation and refinement of gene-regulatory pathways on a network of physical interactions.
    Genome Biol, Vol. 6, No. 7. (2005)
    by CH Yeang, HC Mak, S McCuine, C Workman, T Jaakkola, T Ideker
    posted to cdp_center signalling_networks by cdppublications on 2007-04-04 17:03:37 as ** along with 11 people and 1 group jago carlk AlexanderPico snuppepuppan abhik tmmurali textoris wnpx noano koller ccr CDP
  • Modeling the combinatorial functions of multiple transcription factors.
    J Comput Biol, Vol. 13, No. 2. (March 2006), pp. 463-480.
    by CH Yeang, T Jaakkola
    posted to cdp_center modelling transcription_factors by cdppublications on 2007-04-04 16:59:46 as ** along with 1 person and 1 group roys CDP
  • A structural basis for 14-3-3sigma functional specificity.
    J Biol Chem, Vol. 280, No. 19. (13 May 2005), pp. 18891-18898.
    by EW Wilker, RA Grant, SC Artim, MB Yaffe
    posted to cdp_center cell_signalling proteomics by cdppublications on 2007-04-04 16:52:53 as ** along with 1 group CDP
  • Efficient Biomolecule Pre-concentration by Nanofilter-triggered Electrokinetic Trapping
    (9-15 October 2005)
    by YC Wang, CH Tsau, TP Burg, S Manalis, J Han
    posted to biomolecular_detection cdp_center by cdppublications on 2007-04-04 16:41:05 as ** along with 1 group CDP
  • Distinct ligand-dependent roles for p38 MAPK in priming and activation of the neutrophil NADPH oxidase.
    J Biol Chem, Vol. 279, No. 26. (25 June 2004), pp. 27059-27068.
    by GE Brown, MQ Stewart, SA Bissonnette, AE Elia, E Wilker, MB Yaffe
    posted to cdp_center mapk by cdppublications on 2007-04-04 16:26:36 as ** along with 1 group CDP
  • A reductionist's systems biology: opinion.
    Curr Opin Cell Biol, Vol. 17, No. 1. (February 2005), pp. 9-11.
    by PK Sorger
    posted to cdp_center systems_biology by cdppublications on 2007-04-04 16:00:59 as ** along with 3 people and 2 groups alexg eweaver jaycopeland SorgerLab CDP
  • A multiplexed homogeneous fluorescence-based assay for protein kinase activity in cell lysates
    Nature Methods, Vol. 2, No. 4. (23 March 2005), pp. 277-284.
    by Melissa D Shults, Kevin A Janes, Douglas A Lauffenburger, Barbara Imperiali
    posted to cdp_center kinase by cdppublications on 2007-04-04 15:57:16 as ** along with 1 group CDP
  • Micromechanical detection of proteins using aptamer-based receptor molecules.
    Anal Chem, Vol. 76, No. 11. (1 June 2004), pp. 3194-3198.
    by CA Savran, SM Knudsen, AD Ellington, SR Manalis
    posted to biomolecular_detection cdp_center by cdppublications on 2007-04-04 15:33:55 as ** along with 1 group CDP
  • Global network analysis of phenotypic effects: protein networks and toxicity modulation in Saccharomyces cerevisiae.
    Proc Natl Acad Sci U S A, Vol. 101, No. 52. (28 December 2004), pp. 18006-18011.
    by MR Said, TJ Begley, AV Oppenheim, DA Lauffenburger, LD Samson
    posted to cdp_center cell_signalling proteomic_networks yeast by cdppublications on 2007-04-04 15:28:42 as ** along with 1 person and 1 group opheliav CDP
  • Adenoviral vector saturates Akt pro-survival signaling and blocks insulin-mediated rescue of tumor necrosis-factor-induced apoptosis.
    J Cell Sci, Vol. 119, No. Pt 18. (15 September 2006), pp. 3788-3798.
    by K Miller-Jensen, KA Janes, YL Wong, LG Griffith, DA Lauffenburger
    posted to apoptosis cdp_center tumor_necrosis_factor by cdppublications on 2007-04-04 15:26:40 as ** along with 1 group CDP
  • Global phosphoproteome of HT-29 human colon adenocarcinoma cells.
    J Proteome Res, Vol. 4, No. 4. (g 2005), pp. 1339-1346.
    by JE Kim, SR Tannenbaum, FM White
    posted to cdp_center phosphoproteomics by cdppublications on 2007-04-04 15:10:09 as ** along with 1 group CDP
  • Insulin regulates cleavage of procaspase-9 via binding of X chromosome-linked inhibitor of apoptosis protein in HT-29 cells.
    Cancer Res, Vol. 64, No. 24. (15 December 2004), pp. 9070-9075.
    by JE Kim, SR Tannenbaum
    posted to apoptosis cdp_center by cdppublications on 2007-04-04 15:04:48 as ** along with 1 group CDP
  • Quantitative Network Signal Combinations Downstream of TCR Activation Can Predict IL-2 Production Response.
    J Immunol, Vol. 178, No. 8. (15 April 2007), pp. 4984-4992.
    by ML Kemp, L Wille, CL Lewis, LB Nicholson, DA Lauffenburger
    posted to cdp_center cell_signalling by cdppublications on 2007-04-04 15:03:55 as ** along with 1 group CDP
  • Bioengineering and Systems Biology
    Annals of Biomedical Engineering, Vol. 34, No. 2. (February 2006), pp. 257-264.
    by Trey Ideker, L Winslow, A Lauffenburger
    posted to cdp_center systems_biology by cdppublications on 2007-04-04 14:57:30 as ** along with 1 person and 1 group wnpx CDP
  • Integrated mechanistic and data-driven modelling for multivariate analysis of signalling pathways.
    J R Soc Interface, Vol. 3, No. 9. (22 August 2006), pp. 515-526.
    by F Hua, S Hautaniemi, R Yokoo, DA Lauffenburger
    posted to cdp_center cell_signalling modelling by cdppublications on 2007-04-04 14:55:38 as ** along with 1 group CDP
  • Effects of Bcl-2 levels on Fas signaling-induced caspase-3 activation: molecular genetic tests of computational model predictions.
    J Immunol, Vol. 175, No. 2. (15 July 2005), pp. 985-995.
    by F Hua, MG Cornejo, MH Cardone, CL Stokes, DA Lauffenburger
    posted to apoptosis cdp_center modelling by cdppublications on 2007-04-04 14:48:59 as ** along with 1 group CDP
  • TAZ: a beta-catenin-like molecule that regulates mesenchymal stem cell differentiation.
    Cell Cycle, Vol. 5, No. 2. (January 2006), pp. 176-179.
    by JH Hong, MB Yaffe
    posted to cdp_center stem_cells by cdppublications on 2007-04-04 14:47:10 as ** along with 1 person and 1 group tdmckee CDP
  • TAZ, a transcriptional modulator of mesenchymal stem cell differentiation.
    Science, Vol. 309, No. 5737. (12 August 2005), pp. 1074-1078.
    by JH Hong, ES Hwang, MT McManus, A Amsterdam, Y Tian, R Kalmukova, E Mueller, T Benjamin, BM Spiegelman, PA Sharp, N Hopkins, MB Yaffe
    posted to cdp_center stem_cells by cdppublications on 2007-04-04 14:44:23 as ** along with 2 people and 1 group tdmckee hplatero CDP
  • The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging.
    Genome Biol, Vol. 6, No. 5. (2005)
    by IG Goldberg, C Allan, JM Burel, D Creager, A Falconi, H Hochheiser, J Johnston, J Mellen, PK Sorger, JR Swedlow
    posted to cdp_center open_microscopy_environment by cdppublications on 2007-04-04 14:41:33 as ** along with 4 people and 2 groups jaycopeland glyg cmor mahogny SorgerLab CDP
  • Convection-limited Surface Transport In Nanofluidic Channels
    9th International Conference on Miniaturized Systems for Chemistry and Life Sciences (October 2005)
    by T Gervais, C Tsau, El J Ali, SR Manalis, KF Jensen
    posted to cdp_center microfluidic_devices by cdppublications on 2007-04-03 21:04:53 as ** along with 1 group CDP
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