cen4ik's library 55 articles Export

	A common motif in G-protein-coupled seven transmembrane helix receptors [My Copy] Journal of Computer-Aided Molecular Design, Vol. 7, No. 6. (1 December 1993), pp. 649-658. by L. Oliveira, A. C. M. Paiva, G. Vriend posted to gpcr by cen4ik on 2008-12-16 18:55:57 as
	Self-organized formation of topologically correct feature maps [My Copy] Biological Cybernetics, Vol. 43 (1982), pp. 59-69. by T. Kohonen posted to screening by cen4ik on 2008-12-10 21:37:15 as
	A Discussion of Measures of Enrichment in Virtual Screening: Comparing the Information Content of Descriptors with Increasing Levels of Sophistication. [My Copy] Journal of Chemical Information and Modeling, Vol. 45, No. 5. (2005), pp. 1369-1375. by A. Bender, R. C. Glen posted to screening by cen4ik on 2008-12-10 21:34:58 as
	SciTegic [My Copy] posted to software by cen4ik on 2008-12-10 21:30:07 as
	Collected algorithms from ACM. Trans. Math. Software [My Copy] ACM. Trans. Math. Software, Vol. 2, No. 1. (1982) by D. F. Shanno, K. H. Phua posted to no-tag by cen4ik on 2008-12-10 21:27:48 as
	NAMD Users Guide, Vers. 2.5 [My Copy] (2003) by Bhandarkar Brunner, C. Chipot, A. Dalke, et al.S. Dixit, P. Grayson, J. Gullingsrud, A. Gursoy, W. Humphrey, D. Hurwitz, N. Krawetz, M. Nelson, J. Phillips, A. Shinozaki, G. Zheng, F. Zhu posted to flexible by cen4ik on 2008-12-10 21:23:41 as
	Using Extended Connectivity fingerprint with Laplasian Modified Bayesian analysis in high-throughput-screening follow-up [My Copy] J. Biomol. Screen, Vol. 10, No. 7. (2005), pp. 628-686. by D. Rogers, M. Hahn posted to screening by cen4ik on 2008-12-09 21:43:27 as
	Protein β-Sheet Partner Prediction by Neural Networks [My Copy] Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology (2000), pp. 25-36. by P. Baldi, G. Pollastri, Claus A. F. Andersen, S. Brunak posted to structure by cen4ik on 2008-12-09 21:40:13 as
	Solvent-accessible surfaces of proteins and nucleic acids [My Copy] Science, Vol. 221, No. 4612. (19 August 1983), pp. 709-713. by M. L. Connolly posted to structure by cen4ik on 2008-12-09 21:33:21 as along with 2 people flbarroso stephenbond
	The Generation of a Unique Machine Description for Chemical Structures-A Technique Developed at Chemical Abstracts Service. [My Copy] Journal of Chemical Documentation, Vol. 5, No. 2. (1 May 1965), pp. 107-113. by H. L. Morgan posted to no-tag by cen4ik on 2008-12-09 21:29:56 as
	A smooth permittivity function for Poisson-Boltzmann solvation methods [My Copy] Journal of Computational Chemistry, Vol. 22, No. 6. (2001), pp. 608-640. by J. Andrew Grant, Barry T. Pickup, Anthony Nicholls posted to no-tag by cen4ik on 2008-12-09 21:26:10 as along with 4 people nickolay dmitry_s_yershov stephenbond onufriev
	Application of a Theory of Enzyme Specificity to Protein Synthesis [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 44, No. 2. (February 1958), pp. 98-104. by D. E. Koshland posted to fit induced by cen4ik on 2008-11-20 12:38:15 as along with 7 people aqeel apostola robert kazemi nigham sim82 boris_aguilar
	Structural Determinants for Ligand-Receptor Conformational Selection in a Peptide G Protein-coupled Receptor [My Copy] J. Biol. Chem., Vol. 282, No. 24. (15 June 2007), pp. 17921-17929. by Zhi-Liang Lu, Marla Coetsee, Colin D. White, Robert P. Millar posted to flexible ligands structure by cen4ik on 2008-11-20 12:21:43 as
	SCOP: a structural classification of proteins database. [My Copy] Nucleic acids research, Vol. 25, No. 1. (1 January 1997), pp. 236-239. by T. J. Hubbard, A. G. Murzin, S. E. Brenner, C. Chothia posted to conservation structure by cen4ik on 2008-11-19 21:09:29 as along with 6 people timhubbard yuslinaz kgutwin iakes rabio cjeans
	The relation between the divergence of sequence and structure in proteins. [My Copy] The EMBO journal, Vol. 5, No. 4. (April 1986), pp. 823-826. by C. Chothia, A. M. Lesk posted to conservation structure by cen4ik on 2008-11-19 16:42:59 as along with 14 people and 6 groups dfdong martainn ucbcjbm bertelsen semin sgoetz ana pansapiens jwm Einat marcius xdeupi ffranca insectopalo structural_bioinformatics Radiation_Damage Stressosome Bioinformatics BioinfoCIPF SGU-CIPF
	The 2.6 Angstrom Crystal Structure of a Human A2A Adenosine Receptor Bound to an Antagonist [My Copy] Science (2 October 2008), 1164772. by Veli-Pekka Jaakola, Mark T. Griffith, Michael A. Hanson, et al.Vadim Cherezov, Ellen Y. Chien, Robert J. Lane, Adriaan P. Ijzerman, Raymond C. Stevens posted to familya gpcr by cen4ik on 2008-11-14 15:43:12 as along with 1 person and 1 group xdeupi LabCompMed
	The neighbor-joining method: a new method for reconstructing phylogenetic trees [My Copy] Molecular Biology and Evolution, Vol. 4 (1987), pp. 406-425. by N. Saitou, Nei posted to alignment by cen4ik on 2008-11-03 15:54:34 as
	Amino acid substitution matrices from protein blocks. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 89, No. 22. (15 November 1992), pp. 10915-10919. by S. Henikoff, J. G. Henikoff posted to alignment by cen4ik on 2008-11-03 15:47:05 as along with 14 people rshe rpetrenko BioNica maria_hauser cmura alefox j3xucite sebk kaarsinogen dgront gurkanbebek Iden-J_GluR cjeans ashwinma
	The neighbor-joining method: a new method for reconstructing phylogenetic trees. [My Copy] Molecular biology and evolution, Vol. 4, No. 4. (1 July 1987), pp. 406-425. by N. Saitou, M. Nei posted to alignment by cen4ik on 2008-11-03 15:21:48 as along with 17 people and 1 group vtraag qiang parnell esyoun forest2087 aprasad mount_misery cawelsh9 sandra_yu greger_halltorp taka gelack BioNica usagi-kirin ArtemPankin bandrewfox Auger Dead 60's
	CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. [My Copy] Nucleic acids research, Vol. 22, No. 22. (11 November 1994), pp. 4673-4680. by J. D. Thompson, D. G. Higgins, T. J. Gibson posted to alignment by cen4ik on 2008-11-03 14:36:11 as along with 34 people and 1 group biomcgary vprieto tomjad oceanwind Blackbeard db344 udivi daforerog Md_2007 sebk usagi-kirin jmw greger_halltorp jshapiro mercaptan evaf caldavis miguel onlyrey bjorns aprasad RMGraze moborg arcticrasta dullhunk caporaso ahanora Haggan BioNica timflutre adijr xingxu newton1234 Lombardo_7 biomedical-nlp
	WOMBAT: World of Molecular Bioactivity [My Copy] In Cheminformatics in Drug Discovery (2004), pp. 223-239. by M. Olah, M. Mracec, L. Ostopovici, et al.R. Rad, A. Bora, N. Hadaruga, I. Olah, M. Banda, Z. Simon, M. Mracec, T. I. Oprea edited by T. I. Oprea posted to screening by cen4ik on 2008-11-02 22:47:39 as
	Receiver-Operating Characteristic Analysis for Evaluating Diagnostic Tests and Predictive Models [My Copy] Circulation, Vol. 115, No. 5. (6 February 2007), pp. 654-657. by Kelly H. Zou, A. James O'Malley, Laura Mauri posted to screening by cen4ik on 2008-11-02 22:25:31 as along with 1 person guhjy
	An introduction to ROC analysis [My Copy] Pattern Recogn. Lett. In ROC Analysis in Pattern Recognition, Vol. 27, No. 8. (June 2006), pp. 861-874. by Tom Fawcett posted to screening by cen4ik on 2008-11-02 22:24:35 as along with 35 people and 6 groups singhsh TLVincent module qluo q_w_e_r_t_y makrehchi Borelli mthomure sbarthelme jjrodriguez jmetzen MosesCheckley ldietz vavi dquest sdvillal xiaoyan2006 dwf camu schlauchi vmoa drivard nklee imrchen kmdaily gsiwo tgyork idonaldson napvasconcelos cdeane haiyeong AbnerCYH isimpson guhjy nherveg Bioinformatics Crypto VT_DLRL Randomness LIVIA BergmanLab
	Comparison of algorithms for dissimilarity-based compound selection [My Copy] Journal of Molecular Graphics and Modelling, Vol. 15, No. 6. (December 1997), pp. 372-385. by Michael Snarey, Nicholas K. Terrett, Peter Willett, David J. Wilton posted to screening by cen4ik on 2008-11-02 22:23:31 as along with 3 people LamBras elvinado sithmein
	Comparative protein structure modeling as an optimization problem1 [My Copy] Journal of Molecular Structure: THEOCHEM*, Vol. 398-399 (June 1997), pp. 489-496. by R. Sanchez, A. Sali posted to structure by cen4ik on 2008-11-02 22:22:19 as
	The Protein Data Bank: unifying the archive [My Copy] Nucl. Acids Res., Vol. 30, No. 1. (1 January 2002), pp. 245-248. by John Westbrook, Zukang Feng, Shri Jain, et al.T. N. Bhat, Narmada Thanki, Veerasamy Ravichandran, Gary L. Gilliland, Wolfgang Bluhm, Helge Weissig, Douglas S. Greer, Philip E. Bourne, Helen M. Berman posted to structure by cen4ik on 2008-11-02 22:21:17 as
	Principles that Govern the Folding of Protein Chains [My Copy] Science, Vol. 181, No. 4096. (1973), pp. 223-230. by C. B. Anfinsen posted to structure by cen4ik on 2008-11-02 22:18:58 as
	Stereochemistry of polypeptide chain configurations. [My Copy] Journal of molecular biology, Vol. 7 (July 1963), pp. 95-99. by G. N. RAMACHANDRAN, C. RAMAKRISHNAN, V. SASISEKHARAN posted to structure by cen4ik on 2008-10-31 18:04:19 as along with 7 people stharward kumar_physics yangjustinc reyez jwm wouterboomsma Diego_Prada
	Numerical experience with sequential quadratic programming algorithms for equality constrained nonlinear programming [My Copy] ACM Trans. Math. Softw., Vol. 15, No. 1. (1989), pp. 49-63. by David F. Shanno, Kang H. Phua posted to no-tag by cen4ik on 2008-10-31 18:01:42 as
	Calculation of protein conformations by proton-proton distance constraints. A new efficient algorithm. [My Copy] J Mol Biol, Vol. 186, No. 3. (5 December 1985), pp. 611-626. by W. Braun, N. Go posted to no-tag by cen4ik on 2008-10-31 17:56:11 as along with 1 person warlock6x3
	Novel Procedure for Modeling Ligand/Receptor Induced Fit Effects [My Copy] Journal of Medicinal Chemistry, Vol. 49, No. 2. (1 January 2006), pp. 534-553. by Woody Sherman, Tyler Day, Matthew P. Jacobson, Richard A. Friesner, Ramy Farid posted to docking flexible by cen4ik on 2008-10-31 17:51:26 as along with 7 people and 1 group klexa sschurer LamBras BragilMassoud yongzhao daevans kazemi TSRI_MGL
	NAMD2: Greater Scalability for Parallel Molecular Dynamics1 [My Copy] Journal of Computational Physics*, Vol. 151, No. 1. (May 1999), pp. 283-312. by L. Kale posted to md by cen4ik on 2008-10-31 17:40:53 as along with 2 people rpetrenko stephenbond
	A rotation-invariant spherical harmonic decomposition method for mapping intravoxel multiple fiber structures [My Copy] NeuroImage, Vol. 29, No. 4. (15 February 2006), pp. 1212-1223. by W. Zhan, E. Stein, Y. Yang posted to screening by cen4ik on 2008-10-31 17:34:23 as
	Synthesis and SAR of a mGluR5 allosteric partial antagonist lead: Unexpected modulation of pharmacology with slight structural modifications to a 5-(phenylethynyl)pyrimidine scaffold [My Copy] Bioorganic & Medicinal Chemistry Letters, Vol. 18, No. 14. (15 July 2008), pp. 4098-4101. by S. Sharma, A. Rodriguez, P. Conn, C. Lindsley posted to ligands mglur5 by cen4ik on 2008-10-31 17:32:08 as
	Structure, Pharmacology and Therapeutic Prospects of Family C G-Protein Coupled Receptors [My Copy] Current Drug Targets, Vol. 8, No. 1. (January 2007), pp. 169-184. by Brauner-Osborne, Hans, Wellendorph, Petrine, Jensen, A. Anders posted to review by cen4ik on 2008-10-31 17:29:00 as
	Effects of the prototypical mGlu5 receptor antagonist 2-methyl-6-(phenylethynyl)-pyridine on rotarod, locomotor activity and rotational responses in unilateral 6-OHDA-lesioned rats [My Copy] European Journal of Pharmacology, Vol. 406, No. 3. (20 October 2000), pp. 403-410. by W. Spooren posted to mglur5 by cen4ik on 2008-10-31 17:28:06 as
	Anxiolytic-Like Effects of the Prototypical Metabotropic Glutamate Receptor 5 Antagonist 2-Methyl-6-(phenylethynyl)pyridine in Rodents [My Copy] J Pharmacol Exp Ther, Vol. 295, No. 3. (1 December 2000), pp. 1267-1275. by Will P. Spooren, Annick Vassout, Hans C. Neijt, et al.Rainer Kuhn, Fabrizio Gasparini, Silvain Roux, Roger D. Porsolt, Conrad Gentsch posted to mglur5 by cen4ik on 2008-10-31 17:26:41 as
	Comparison of correlation vector methods for ligand-based similarity searching [My Copy] Journal of Computer-Aided Molecular Design, Vol. 17, No. 10. (21 October 2003), pp. 687-698. by Uli Fechner, Lutz Franke, Steffen Renner, Petra Schneider, Gisbert Schneider posted to screening by cen4ik on 2008-10-31 17:25:39 as
	Positive and Negative Modulation of Group I Metabotropic Glutamate Receptors [My Copy] J. Med. Chem., Vol. 51, No. 3. (14 February 2008), pp. 634-647. by Maksims Vanejevs, Claudia Jatzke, Steffen Renner, et al.Sibylle Müller, Mirko Hechenberger, Tanja Bauer, Anna Klochkova, Ilya Pyatkin, Denis Kazyulkin, Elena Aksenova, Sergey Shulepin, Olga Timonina, Ariane Haasis, Aleksandrs Gutcaits, Christopher G. Parsons, Valerjans Kauss, Tanja Weil posted to mglur by cen4ik on 2008-10-20 09:06:55 as
	Structural Changes in the Schiff Base Region of Squid Rhodopsin upon Photoisomerization Studied by Low-Temperature FTIR Spectroscopy [My Copy] Biochemistry, Vol. 45, No. 9. (7 March 2006), pp. 2845-2851. by T. Ota, Y. Furutani, A. Terakita, Y. Shichida, H. Kandori posted to gpcr structure by cen4ik on 2006-11-07 21:13:33 as
	Structural Changes during the Formation of Early Intermediates in the Bacteriorhodopsin Photocycle [My Copy] Biophys. J., Vol. 83, No. 3. (1 September 2002), pp. 1281-1297. by Shigehiko Hayashi, Emad Tajkhorshid, Klaus Schulten posted to activation rhodopsin by cen4ik on 2006-11-07 21:11:21 as along with 1 person vahmurk
	A Close Structural Analog of 2-Methyl-6-(phenylethynyl)-pyridine Acts as a Neutral Allosteric Site Ligand on Metabotropic Glutamate Receptor Subtype 5 and Blocks the Effects of Multiple Allosteric Modulators [My Copy] Mol Pharmacol, Vol. 68, No. 6. (1 December 2005), pp. 1793-1802. by Alice L. Rodriguez, Yi Nong, Nishant K. Sekaran, David Alagille, Gilles D. Tamagnan, Jeffrey P. Conn posted to allosteric mglur5 by cen4ik on 2006-11-06 11:39:19 as
	Crystal structure of a photoactivated deprotonated intermediate of rhodopsin. [My Copy] Proc Natl Acad Sci U S A (23 October 2006) by David Salom, David T T. Lodowski, Ronald E E. Stenkamp, et al.Isolde Le Trong, Marcin Golczak, Beata Jastrzebska, Tim Harris, Juan A A. Ballesteros, Krzysztof Palczewski posted to activation rhodopsin by cen4ik on 2006-11-02 13:17:52 as along with 1 person and 1 group xdeupi LabCompMed
	Movement of ‘gating charge’ is coupled to ligand binding in a G-protein-coupled receptor [My Copy] Nature (25 October 2006) by Yair Ben-Chaim, Baron Chanda, Nathan Dascal, Francisco Bezanilla, Itzchak Parnas, Hanna Parnas posted to activation agonist gpcr by cen4ik on 2006-11-02 13:03:34 as along with 1 person paulschlesinger
	A two-entropies analysis to identify functional positions in the transmembrane region of class A G protein-coupled receptors [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 63, No. 4. (1 June 2006), pp. 1018-1030. by Kai Ye, Eric-Wubbo M. Lameijer, Margot W. Beukers, Adriaan P. Ijzerman posted to entropy familya gpcr by cen4ik on 2006-10-22 14:49:36 as along with 2 people and 1 group xdeupi cat_worth LabCompMed
	Prediction of Small-Molecule Binding to Cytochrome P450 3A4: Flexible Docking Combined with Multidimensional QSAR [My Copy] ChemMedChem, Vol. 1, No. 1. (2006), pp. 73-81. by Markus a, Max Dobler, Angelo Vedani posted to docking flexible by cen4ik on 2006-10-09 09:04:40 as along with 1 person and 1 group yongzhao TSRI_MGL
	Discovery of positive allosteric modulators of metabotropic glutamate receptor subtype 5 (mGluR5). [My Copy] Curr Top Med Chem, Vol. 5, No. 9. (2005), pp. 825-846. by D. L. Williams, C. W. Lindsley posted to allosteric ligands mglur5 review by cen4ik on 2006-09-13 11:37:38 as
	Probing the activation-promoted structural rearrangements in preassembled receptor–G protein complexes [My Copy] Nature Structural & Molecular Biology, Vol. 13, No. 9. (13 August 2006), pp. 778-786. by Céline Galés, Joost J. J. Van Durm, Stéphane Schaak, et al.Stéphanie Pontier, Yann Percherancier, Martin Audet, Hervé Paris, Michel Bouvier posted to g-protein by cen4ik on 2006-09-08 09:37:13 as along with 1 person and 1 group gcaltabiano LabCompMed
	How GPCRs hit the switch [My Copy] Nature Structural & Molecular Biology, Vol. 13, No. 9., pp. 756-757. by Sekar Ramachandran, Richard A. Cerione posted to g-protein by cen4ik on 2006-09-08 09:33:15 as
	Mechanism of the receptor-catalyzed activation of heterotrimeric G proteins [My Copy] Nature Structural & Molecular Biology, Vol. 13, No. 9. (06 August 2006), pp. 772-777. by William M. Oldham, Ned Van Eps, Anita M. Preininger, Wayne L. Hubbell, Heidi E. Hamm posted to g-protein by cen4ik on 2006-09-08 09:28:22 as along with 2 people and 3 groups barry gcaltabiano structural_bioinformatics Bioinformatics LabCompMed

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structure	11
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flexible	4
rhodopsin	4
activation	3
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ligands	3
review	3
allosteric	2
conservation	2
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dimerization	1
entropy	1
fit	1
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md	1
mglur	1
software	1
virtual	1

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