cerca's library 237 articles Export

	GRIP: A web-based system for constructing Gold Standard datasets for protein-protein interaction prediction. [My Copy] Source code for biology and medicine, Vol. 4, No. 1. (26 January 2009) by Fiona Browne, Haiying Wang, Huiru Zheng, Francisco Azuaje posted to ppi_goldstandard by cerca on 2009-10-22 10:37:54 as along with 2 people dswan sjcockell
	CABIN: Collective Analysis of Biological Interaction Networks☆ [My Copy] Computational Biology and Chemistry, Vol. 31, No. 3. (June 2007), pp. 222-225. by Mudita Singhal, Kelly Domico posted to ppiprediction interologs by cerca on 2009-10-06 15:01:46 as along with 1 person guhjy
	Prediction of evolutionarily conserved interologs in Mus musculus. [My Copy] BMC genomics, Vol. 9 (08 October 2008), 465. by Sailu Yellaboina, Dawood B. Dudekula, Minoru Sh S. h. Ko posted to ppiprediction interologs by cerca on 2009-10-06 15:00:17 as along with 1 person pengchy
	Simultaneous gene expression profiling in human macrophages infected with Leishmania major parasites using SAGE [My Copy] BMC Genomics, Vol. 9, No. 1. (21 May 2008), 238. by Fatma Guerfali, Dhafer Laouini, Lamia G. Tabbane, et al.Florence Ottones, Khadija B. Aissa, Alia Benkahla, Laurent Manchon, David Piquemal, Sondos Smandi, Ons Mghirbi, Therese Commes, Jacques Marti, Koussay Dellagi posted to lmajor by cerca on 2009-10-02 06:08:58 as
	GENETICS: Leishmania Exploit Sex [My Copy] Science, Vol. 324, No. 5924. (10 April 2009), pp. 187-189. by Michael A. Miles, Matthew Yeo, Isabel L. Mauricio posted to lmajor by cerca on 2009-10-02 06:01:10 as
	Demonstration of Genetic Exchange During Cyclical Development of Leishmania in the Sand Fly Vector [My Copy] Science, Vol. 324, No. 5924. (10 April 2009), pp. 265-268. by Natalia S. Akopyants, Nicola Kimblin, Nagila Secundino, et al.Rachel Patrick, Nathan Peters, Phillip Lawyer, Deborah E. Dobson, Stephen M. Beverley, David L. Sacks posted to lmajor by cerca on 2009-10-02 05:57:01 as
	A Universal Framework for Regulatory Element Discovery across All Genomes and Data Types [My Copy] Molecular Cell, Vol. 28, No. 2. (26 October 2007), pp. 337-350. by Olivier Elemento, Noam Slonim, Saeed Tavazoie posted to regulatory_elements by cerca on 2009-09-29 20:42:36 as along with 17 people and 2 groups ilyashl TRHvidsten leelarcombe kieran101 ana brant cwbrown aswin cjeans zwang cabbagezs nklee maximilianh idonaldson sb_journal_club kristen barwil EisenLab Motif Discovery
	MIPS: a database for genomes and protein sequences. [My Copy] Nucleic acids research, Vol. 30, No. 1. (1 January 2002), pp. 31-34. by H. W. Mewes, D. Frishman, U. Güldener, et al.G. Mannhaupt, K. Mayer, M. Mokrejs, B. Morgenstern, M. Münsterkötter, S. Rudd, B. Weil posted to ppi_goldstandard by cerca on 2009-09-29 15:33:40 as along with 6 people and 1 group lawraga Borelli irenas chad_davis dgruiz dylanwalker dbk-lab
	A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic Data [My Copy] Science, Vol. 302, No. 5644. (17 October 2003), pp. 449-453. by Ronald Jansen, Haiyuan Yu, Dov Greenbaum, et al.Yuval Kluger, Nevan J. Krogan, Sambath Chung, Andrew Emili, Michael Snyder, Jack F. Greenblatt, Mark Gerstein posted to ppiprediction by cerca on 2009-09-29 06:14:14 as along with 22 people and 2 groups hagechouchin443 aelef Robinder lfriedl balajis opheliav yuval wnpx nickluscombe ruvido raiyar massivemayhem kdang dbgrant nedwards karfunkel Evangelia shung phoenixzxl penpen926 carlk frohike kdl EBI-regulation
	Systematic identification of functional orthologs based on protein network comparison [My Copy] Genome Research, Vol. 16, No. 3. (1 March 2006), pp. 428-435. by Sourav Bandyopadhyay, Roded Sharan, Trey Ideker posted to functional_prediction functional_annotation by cerca on 2009-09-28 03:32:15 as along with 6 people kiekyon swp09 j3xucite koller iris_2001 carlk
	Function prediction and protein networks. [My Copy] Curr Opin Cell Biol, Vol. 15, No. 2. (April 2003), pp. 191-198. by M. A. Huynen, B. Snel, C. von Mering, P. Bork posted to functional_prediction functional_annotation by cerca on 2009-09-28 03:32:03 as along with 5 people and 1 group lfriedl balajis lyongu bootsy carlk kdl
	Assessment of prediction accuracy of protein function from protein--protein interaction data. [My Copy] Yeast, Vol. 18, No. 6. (April 2001), pp. 523-531. by H. Hishigaki, K. Nakai, T. Ono, A. Tanigami, T. Takagi posted to functional_prediction functional_annotation by cerca on 2009-09-28 03:31:47 as along with 3 people shivaram jiny carlk
	Prediction of protein function using protein-protein interaction data. [My Copy] J Comput Biol, Vol. 10, No. 6. (2003), pp. 947-960. by M. Deng, K. Zhang, S. Mehta, T. Chen, F. Sun posted to functional_prediction functional_annotation by cerca on 2009-09-28 03:29:26 as along with 4 people roys satsumakenji iris_2001 carlk
	Functional topology in a network of protein interactions. [My Copy] Bioinformatics, Vol. 20, No. 3. (12 February 2004), pp. 340-348. by N. Przulj, D. A. Wigle, I. Jurisica posted to functional_prediction functional_annotation by cerca on 2009-09-28 03:29:13 as along with 8 people and 1 group liaofeng sergiun jiny dragonrez kuhn lfriedl maralena carlk kdl
	Discovering functional interaction patterns in protein-protein interaction networks [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Mehmet Turanalp, Tolga Can posted to functional_prediction functional_annotation by cerca on 2009-09-28 03:28:34 as along with 6 people and 1 group carlk guhjy maralena Tingting renatomilani aprildh31 Proteasome
	Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation [My Copy] Bioinformatics, Vol. 19, No. 10. (1 July 2003), pp. 1275-1283. by P. W. Lord, R. D. Stevens, A. Brass, C. A. Goble posted to gene_ontology by cerca on 2009-09-28 03:18:22 as along with 12 people and 2 groups mjbell colmryan MarcoAlvarez operon pengchy j3xucite CitoJam ejmeij josemblazquez sgoetz roys penpen926 ilps LanguageModeling
	Deciphering protein-protein interactions. Part II. Computational methods to predict protein and domain interaction partners. [My Copy] PLoS computational biology, Vol. 3, No. 4. (27 April 2007), e43. by Benjamin A. Shoemaker, Anna R. Panchenko posted to read_for_review ppiprediction by cerca on 2009-09-27 19:10:26 as along with 23 people timg jperkins chica kiekyon kshameer zdai Robinder giovenko Yanno guhjy aalibes bicko jfr chad_davis cjeans iris_2001 zwang lpfernandes groepl carlk Evangelia higueruelo phoenixzxl
	Probabilistic Protein Function Prediction from Heterogeneous Genome-Wide Data [My Copy] PLoS ONE, Vol. 2, No. 3. (2007), e337. by Naoki Nariai, Eric D. Kolaczyk, Simon Kasif posted to read_for_review functional_prediction functional_annotation by cerca on 2009-09-27 19:07:17 as along with 4 people ptrobajo sgoetz wilbur tmmurali
	Network-based prediction of protein function [My Copy] Molecular Systems Biology, Vol. 3 (13 March 2007) by Roded Sharan, Igor Ulitsky, Ron Shamir posted to read_for_review functional_annotation by cerca on 2009-09-27 19:02:21 as along with 24 people and 1 group ptrobajo kiekyon AbnerCYH roys jwhitney dragonrez Sonix mtaschuk babakap phoenixzxl druvus pengchy jjray cmmorel wnpx julius mikaelhuss massivemayhem cjeans iris_2001 karfunkel mingzhi ellakat carlk SysbioMPI-TCells
	Unequal evolutionary conservation of human protein interactions in interologous networks. [My Copy] Genome biology, Vol. 8, No. 5. (29 May 2007), R95. by Kevin R. Brown, Igor Jurisica posted to ppiprediction by cerca on 2009-06-17 08:18:31 as along with 6 people chica saket diamantis grahamc zwang winterschlaefer
	Ortholog-based protein-protein interaction prediction and its application to inter-species interactions. [My Copy] BMC bioinformatics, Vol. 9 Suppl 12 (2008) by S. A. Lee, C. H. Chan, C. H. Tsai, et al.J. M. Lai, F. S. Wang, C. Y. Kao, C. Y. Huang posted to ppiprediction by cerca on 2009-06-17 07:57:27 as along with 2 people guhjy grahamc
	Trypanosoma cruzi trans-sialidase and cell invasion [My Copy] Parasitology Today, Vol. 9, No. 6. (June 1993), pp. 218-222. by S. Schenkman, D. Eichinger posted to parasite_host_interaction_tcruzi by cerca on 2009-06-17 03:33:26 as
	Combining multiple positive training sets to generate confidence scores for protein-protein interactions. [My Copy] Bioinformatics (Oxford, England) (14 November 2008) by Jingkai Yu, Russell L L. Finley posted to low_and_high_conf_interactions by cerca on 2009-04-16 02:52:24 as along with 2 people anf grahamc
	Dot-blot immunodetection as a versatile and high-throughput assay to evaluate recombinant GPCRs produced in the yeast Pichia pastoris [My Copy] Protein Expression and Purification, Vol. 50, No. 1. (November 2006), pp. 118-127. by Gabrielle Zeder-Lutz, Nadia Cherouati, Christoph Reinhart, Franc Pattus, Renaud Wagner posted to protein_dot_blot by cerca on 2009-04-15 10:12:30 as
	'Red pigment' from ADE-2 mutants of S. cerevisiae prevents DNA cleavage by restriction endonucleases. [My Copy] FEBS letters, Vol. 182, No. 2. (25 March 1985), pp. 413-414. by A. Meskauskas, V. Ksenzenko, M. Shlyapnikov, V. Kryukov, D. Citavicius posted to yeast by cerca on 2009-04-15 10:07:26 as
	High throughput protein-protein interaction data: clues for the architecture of protein complexes [My Copy] Proteome Science, Vol. 6 (26 November 2008), 32. by James, Marc R. Wilkins posted to proteasome by cerca on 2009-04-01 00:33:00 as along with 1 person guhjy
	Proteasome-associated proteins: regulation of a proteolytic machine. [My Copy] Biological chemistry, Vol. 386, No. 8. (August 2005), pp. 725-737. by M. Schmidt, J. Hanna, S. Elsasser, D. Finley posted to proteasome by cerca on 2009-04-01 00:32:37 as
	Regulatory subunit interactions of the 26S proteasome, a complex problem. [My Copy] Trends in biochemical sciences, Vol. 25, No. 2. (February 2000), pp. 83-88. by K. Ferrell, C. R. Wilkinson, W. Dubiel, C. Gordon posted to proteasome by cerca on 2009-04-01 00:31:21 as
	Molecular mechanisms of proteasome assembly. [My Copy] Nature reviews. Molecular cell biology, Vol. 10, No. 2. (February 2009), pp. 104-115. by Shigeo Murata, Hideki Yashiroda, Keiji Tanaka posted to proteasome by cerca on 2009-03-31 23:57:54 as along with 3 people guhjy tprpip operon
	MEASURING IMPLICIT AND EXPLICIT KNOWLEDGE OF A SECOND LANGUAGE: A Psychometric Study [My Copy] Studies in Second Language Acquisition, Vol. 27, No. 02. (2005), pp. 141-172. by Rod Ellis posted to flavia by cerca on 2009-03-28 23:07:55 as along with 1 person rebeccamancy
	Identification, purification, and characterization of a PA700-dependent activator of the proteasome. [My Copy] The Journal of biological chemistry, Vol. 271, No. 6. (9 February 1996), pp. 3112-3118. by G. N. DeMartino, R. J. Proske, C. R. Moomaw, et al.A. A. Strong, X. Song, H. Hisamatsu, K. Tanaka, C. A. Slaughter posted to proteasome by cerca on 2009-03-22 05:50:14 as
	Isolation, purification and characterization of GPI-anchored membrane proteins from Trypanosoma rangeli and Trypanosoma cruzi [My Copy] Acta Tropica, Vol. 97, No. 2. (February 2006), pp. 140-145. by N. Anezrojas, P. Garcialugo, G. Crisante, A. Rojas, N. Anez posted to parasite_host_interaction_tcruzi by cerca on 2009-03-19 06:49:50 as
	Effect of Trypanosoma cruzi released antigens binding to non-infected cells on anti-parasite antibody recognition and expression of extracellular matrix components. [My Copy] Acta tropica, Vol. 83, No. 2. (August 2002), pp. 103-115. by R. T. Pinho, M. A. Vannier-Santos, C. R. Alves, A. P. Marino, L. R. Castello Branco, J. Lannes-Vieira posted to parasite_host_interaction_tcruzi by cerca on 2009-03-19 06:38:11 as
	Isolation and characterisation of genomic and cDNA clones coding for a serine-, alanine-, and proline-rich protein of Trypanosoma cruzi [My Copy] International Journal for Parasitology, Vol. 31, No. 3. (March 2001), pp. 259-264. by M. Carmo posted to parasite_host_interaction_tcruzi by cerca on 2009-03-19 06:21:19 as
	Attachment of Trypanosoma cruzi to host cells: A monoclonal antibody recognizes a trypomastigote stage-specific epitope on the gp 83 required for parasite attachment [My Copy] Biochemical and Biophysical Research Communications, Vol. 182, No. 1. (15 January 1992), pp. 6-13. by F. Villalta, M. Lima, A. Ruizruano, L. Zhou posted to parasite_host_interaction_tcruzi by cerca on 2009-03-19 06:13:00 as
	Trypanosoma cruzi trypomastigote clones differentially express a parasite cell adhesion molecule [My Copy] Molecular and Biochemical Parasitology, Vol. 33, No. 2. (01 March 1989), pp. 159-170. by M. Lima, F. Villalta posted to parasite_host_interaction_tcruzi by cerca on 2009-03-19 06:12:49 as
	Host-cell attachment by Trypanosoma cruzi: Identification of an adhesion molecule [My Copy] Biochemical and Biophysical Research Communications, Vol. 155, No. 1. (30 August 1988), pp. 256-262. by M. Lima, F. Villalta posted to parasite_host_interaction_tcruzi by cerca on 2009-03-19 06:11:21 as
	Purification of surface proteins involved in adhesion to host cells [My Copy] Biochemical and Biophysical Research Communications, Vol. 172, No. 2. (30 October 1990), pp. 925-931. by F. Villalta, M. Lima, L. Zhou posted to parasite_host_interaction_tcruzi by cerca on 2009-03-19 06:10:48 as
	The major surface glycoprotein of Trypanosoma cruzi amastigotes are ligands of the human serum mannose-binding protein. [My Copy] Infection and immunity, Vol. 64, No. 7. (July 1996), pp. 2649-2656. by S. J. Kahn, M. Wleklinski, R. A. Ezekowitz, D. Coder, A. Aruffo, A. Farr posted to parasite_host_interaction_tcruzi by cerca on 2009-03-19 06:09:47 as
	Expression of GP82 and GP90 surface glycoprotein genes of Trypanosoma cruzi during in vivo metacyclogenesis in the insect vector Rhodnius prolixus [My Copy] Acta Tropica, Vol. 105, No. 1. (January 2008), pp. 87-91. by E. Cordero, L. Gentil, G. Crisante, et al.J. Ramirez, N. Yoshida, N. Anez, J. Francodasilveira posted to parasite_host_interaction_tcruzi by cerca on 2009-03-19 06:08:38 as
	The 35/50 kDa surface antigen of Trypanosoma cruzi metacyclic trypomastigotes, an adhesion molecule involved in host cell invasion [My Copy] Parasite Immunology, Vol. 15, No. 2. (1993), pp. 121-125. by Rita, Lucia V. E. R. A. Rigoni, Jorge Gonzalez, Nobuko Yoshida posted to parasite_host_interaction_tcruzi by cerca on 2009-03-19 06:08:01 as
	26S Proteasome Structure Revealed by Three-dimensional Electron Microscopy [My Copy] Journal of Structural Biology, Vol. 121, No. 1. (1998), pp. 19-29. by Jochen Walz, Annette Erdmann, Mary Kania, Dieter Typke, Abraham J. Koster, Wolfgang Baumeister posted to proteasome by cerca on 2009-02-26 07:35:46 as along with 1 person chad_davis
	The regulatory complex of Drosophila melanogaster 26S proteasomes. Subunit composition and localization of a deubiquitylating enzyme. [My Copy] J Cell Biol, Vol. 150, No. 1. (10 July 2000), pp. 119-130. by H. Hölzl, B. Kapelari, J. Kellermann, et al.E. Seemüller, M. Sümegi, A. Udvardy, O. Medalia, J. Sperling, S. A. Müller, A. Engel, W. Baumeister posted to proteasome by cerca on 2009-02-26 07:32:03 as along with 1 person zhlei
	The ubiquitin-proteasome system and its role in inflammatory and autoimmune diseases. [My Copy] Cellular & molecular immunology, Vol. 3, No. 4. (August 2006), pp. 255-261. by J. Wang, M. A. Maldonado posted to proteasome by cerca on 2009-02-25 20:12:22 as
	Functional organization of the yeast proteome by systematic analysis of protein complexes [My Copy] Nature, Vol. 415, No. 6868. (10 January 2002), pp. 141-147. by Anne-Claude Gavin, Markus Bosche, Roland Krause, et al.Paola Grandi, Martina Marzioch, Andreas Bauer, Jorg Schultz, Jens M. Rick, Anne-Marie Michon, Cristina-Maria Cruciat, Marita Remor, Christian Hofert, Malgorzata Schelder, Miro Brajenovic, Heinz Ruffner, Alejandro Merino, Karin Klein, Manuela Hudak, David Dickson, Tatjana Rudi, Volker Gnau, Angela Bauch, Sonja Bastuck, Bettina Huhse, Christina Leutwein, Marie-Anne Heurtier, Richard R. Copley, Angela Edelmann, Erich Querfurth, Vladimir Rybin, Gerard Drewes, Manfred Raida, Tewis Bouwmeester, Peer Bork, Bertrand Seraphin, Bernhard Kuster, Gitte Neubauer, Giulio Superti-Furga posted to interactions ppi by cerca on 2009-02-25 19:42:50 as along with 23 people and 2 groups carlk chica lawraga semin taenneken adiel baaden dragonrez shivaram helenc lfriedl chad_davis balajis opheliav wnpx becarmson raiyar grahamc nicoleq iris_2001 csanford frohike ethkim kdl steinmetzlab
	Comparison of human COP9 signalosome and 26S proteasome ‘lid’ [My Copy] Molecular Biology Reports, Vol. 26, No. 1. (1 April 1999), pp. 29-34. by Wolfgang Henke, Katherine Ferrell, Dawadschargal Bech-Otschir, et al.Michael Seeger, Rüdiger Schade, Peter Jungblut, Michael Naumann, Wolfgang Dubiel posted to proteasome by cerca on 2009-02-25 19:15:33 as
	Quaternary Structure of the ATPase Complex of Human 26S Proteasomes Determined by Chemical Cross-Linking [My Copy] Archives of Biochemistry and Biophysics, Vol. 386, No. 1. (01 February 2001), pp. 89-94. by R. Hartmann-Petersen posted to proteasome by cerca on 2009-02-25 02:38:50 as
	Structural organization of the 19S proteasome lid: insights from MS of intact complexes. [My Copy] PLoS Biol, Vol. 4, No. 8. (August 2006) by M. Sharon, T. Taverner, X. I. Ambroggio, R. J. Deshaies, C. V. Robinson posted to proteasome by cerca on 2009-02-25 02:38:01 as along with 2 people zhlei faion
	Assembly of the regulatory complex of the 26S proteasome [My Copy] Molecular Biology Reports, Vol. 26, No. 1. (1 April 1999), pp. 15-19. by Carlos Gorbea, Daniel Taillandier, Martin Rechsteiner posted to proteasome by cerca on 2009-02-25 02:35:31 as
	Genome-scale reconstruction of the Lrp regulatory network in Escherichia coli. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (3 December 2008) by Byung-Kwan K. Cho, Christian L L. Barrett, Eric M M. Knight, Young Seoub S. Park, Bernhard Ø O. Palsson posted to systembiology by cerca on 2009-02-08 05:32:26 as along with 2 people JeremyZucker gmunson

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proteasome	51
tbrucei	24
gpi	22
ppiprediction	21
analysisy2h	19
orthology	16
parasitecoat	16
ppi	14
parasite_host_interaction_tcruzi	11
y2h	11
ageing	10
drug	8
functional_annotation	8
bioinformatics	7
functional_prediction	7
systembiology	7
interologs	6
lmajor	5
perturbing_ppi	5
transcription	5
vsg	4
low_and_high_conf_interactions	3
paralogy	3
parasite_host_interaction	3
ppi_databases	3
protein_families_domains	3
read_for_review	3
automated_gel_analysis	2
f1000	2
ppi_goldstandard	2
proteasome_drug	2
tbrucei_proteasome	2
annotation	1
author	1
bioinfo_classic	1
flavia	1
gene_ontology	1
interactions	1
modeling_evolution	1
opinions	1
peptide_drugs	1
pfalciparum_tbrucei_host_parasite_interaction	1
pipeline	1
ppi3d	1
ppi_methods	1
proteasome_assembly	1
protein_dot_blot	1
proteinfragments	1
regulatory_elements	1
yeast	1

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