cgaugain's library 131 articles Export

	PathExpress update: the enzyme neighbourhood method of associating gene-expression data with metabolic pathways [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_2. (1 July 2009), pp. W335-339. by Nicolas Goffard, Tancred Frickey, Georg Weiller posted to metabolism book_em by cgaugain on 2009-09-07 09:38:46 as along with 1 person guhjy
	Impacts of yeast metabolic network structure on enzyme evolution [My Copy] Genome Biology, Vol. 8, No. 8. (09 August 2007), 407. by Chenqi Lu, Ze Zhang, Lindsey Leach, M. J. Kearsey, Z. W. Luo posted to modularity metabolism abcmeth_article by cgaugain on 2009-09-02 15:42:50 as
	Toward systematic metabolic engineering based on the analysis of metabolic regulation by the integration of different levels of information [My Copy] Biochemical Engineering Journal, Vol. 46, No. 3. (01 November 2009), pp. 235-251. by Kazuyuki Shimizu posted to book_em by cgaugain on 2009-08-28 10:24:28 as
	Growth control of the eukaryote cell: a systems biology study in yeast. [My Copy] Journal of biology, Vol. 6, No. 2. (30 April 2007), 4. by Juan I. Castrillo, Leo A. Zeef, David C. Hoyle, et al.Nianshu Zhang, Andrew Hayes, David C. Gardner, Michael J. Cornell, June Petty, Luke Hakes, Leanne Wardleworth, Bharat Rash, Marie Brown, Warwick B. Dunn, David Broadhurst, Kerry O'Donoghue, Svenja S. Hester, Tom P. Dunkley, Sarah R. Hart, Neil Swainston, Peter Li, Simon J. Gaskell, Norman W. Paton, Kathryn S. Lilley, Douglas B. Kell, Stephen G. Oliver posted to book_em by cgaugain on 2009-08-27 17:02:08 as along with 13 people and 1 group mqbphcw3 schwartzjmc neilswainston michaelbarton aalibes alexg dullhunk balabu dylan77 cabbagezs Stew roys alanrw EisenLab
	A joint model of regulatory and metabolic networks. [My Copy] BMC bioinformatics, Vol. 7, No. 1. (04 July 2006), 332. by Chen-Hsiang H. Yeang, Martin Vingron posted to book_em by cgaugain on 2009-08-27 17:00:54 as along with 5 people ptrobajo schwartzjmc alexg cgaray roys
	A Proteome Analysis of the Cadmium Response in Saccharomyces cerevisiae [My Copy] J. Biol. Chem., Vol. 276, No. 11. (9 March 2001), pp. 8469-8474. by Karin Vido, Daniel Spector, Gilles Lagniel, Sebastien Lopez, Michel B. Toledano, Jean Labarre posted to thesis book_em by cgaugain on 2009-08-27 16:58:56 as
	A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks [My Copy] Nat Biotech, Vol. 18, No. 3. (March 2000), pp. 326-332. by Stefan Schuster, David A. Fell, Thomas Dandekar posted to thesis metabolism book_em by cgaugain on 2009-08-27 16:56:34 as along with 5 people and 1 group schwartzjmc camster dragonrez Borelli madhadron dbk-lab
	Theory for the Systemic Definition of Metabolic Pathways and their use in Interpreting Metabolic Function from a Pathway-Oriented Perspective [My Copy] Journal of Theoretical Biology, Vol. 203, No. 3. (07 April 2000), pp. 229-248. by C. Schilling posted to book_em by cgaugain on 2009-08-27 16:54:18 as along with 2 people schwartzjmc alexg
	A computational approach to measuring coherence of gene expression in pathways [My Copy] Genomics, Vol. 84, No. 1. (July 2004), pp. 211-217. by Howard H. Yang, Ying Hu, Kenneth H. Buetow, Maxwell P. Lee posted to book_em by cgaugain on 2009-08-27 16:51:11 as
	KEGG: Kyoto Encyclopedia of Genes and Genomes [My Copy] Nucl. Acids Res., Vol. 28, No. 1. (1 January 2000), pp. 27-30. by Minoru Kanehisa, Susumu Goto posted to metabolism book_em by cgaugain on 2009-08-27 16:47:33 as along with 20 people mauriceccy akshayk jeremymiller VGreiff karinlag sgoetz namunet csanford dquest j3xucite fisherp koerner ruvido noby naegele katerinakal grottenolm Evangelia natstreet jerome_ucsf_slb
	Multiple high-throughput analyses monitor the response of E. coli to perturbations. [My Copy] Science (New York, N.Y.), Vol. 316, No. 5824. (27 April 2007), pp. 593-597. by Nobuyoshi Ishii, Kenji Nakahigashi, Tomoya Baba, et al.Martin Robert, Tomoyoshi Soga, Akio Kanai, Takashi Hirasawa, Miki Naba, Kenta Hirai, Aminul Hoque, Pei Yee Y. Ho, Yuji Kakazu, Kaori Sugawara, Saori Igarashi, Satoshi Harada, Takeshi Masuda, Naoyuki Sugiyama, Takashi Togashi, Miki Hasegawa, Yuki Takai, Katsuyuki Yugi, Kazuharu Arakawa, Nayuta Iwata, Yoshihiro Toya, Yoichi Nakayama, Takaaki Nishioka, Kazuyuki Shimizu, Hirotada Mori, Masaru Tomita posted to book_em by cgaugain on 2009-08-27 16:44:10 as along with 8 people and 1 group JeremyZucker ynaito thomaskelder jjray raiyar dylan77 ytoya IgorG steinmetzlab
	PathExpress: a web-based tool to identify relevant pathways in gene expression data [My Copy] Nucl. Acids Res., Vol. 35, No. suppl_2. (13 July 2007), pp. W176-181. by Nicolas Goffard, Georg Weiller posted to book_em by cgaugain on 2009-08-27 16:41:18 as along with 5 people and 1 group daforerog guhjy jfr ealloza AlexanderPico BioinfoCIPF
	Genomic analysis of metabolic pathway gene expression in mice [My Copy] Genome Biology, Vol. 6, No. 7. (2005), R59. by Anatole Ghazalpour, Sudheer Doss, Sonal Sheth, et al.Leslie I. Drake, Eric Schadt, Aldons Lusis, Thomas Drake posted to book_em by cgaugain on 2009-08-27 16:39:12 as
	Coordinated concentration changes of transcripts and metabolites in Saccharomyces cerevisiae. [My Copy] PLoS computational biology, Vol. 5, No. 1. (30 January 2009), e1000270. by Patrick H. Bradley, Matthew J. Brauer, Joshua D. Rabinowitz, Olga G. Troyanskaya posted to book_em by cgaugain on 2009-08-27 16:35:56 as along with 2 people agomez roys
	Post-transcriptional Expression Regulation in the Yeast Saccharomyces cerevisiae on a Genomic Scale [My Copy] Mol Cell Proteomics, Vol. 3, No. 11. (1 November 2004), pp. 1083-1092. by Andreas Beyer, Jens Hollunder, Heinz-Peter Nasheuer, Thomas Wilhelm posted to book_em by cgaugain on 2009-08-27 16:33:27 as along with 3 people schwartzjmc roys michaelbarton
	Comparing protein abundance and mRNA expression levels on a genomic scale [My Copy] Genome Biology, Vol. 4, No. 9. (2003), 117. by Dov Greenbaum, Christopher Colangelo, Kenneth Williams, Mark Gerstein posted to book_em by cgaugain on 2009-08-27 16:30:09 as along with 6 people and 1 group mgomes windman83 jo_davies penka JeremyZucker roys Nie
	Hierarchical thinking in network biology: the unbiased modularization of biochemical networks [My Copy] Trends in Biochemical Sciences, Vol. 29, No. 12. (December 2004), pp. 641-647. by J. Papin, J. Reed, B. Palsson posted to network module metabolism book_em by cgaugain on 2009-08-21 16:45:32 as along with 4 people and 3 groups lflorez camster korakot alexg Philosophy_of_Information dbk-lab Blog_and_Wiki_Research
	KEGG spider: interpretation of genomics data in the context of the global gene metabolic network [My Copy] Genome Biology, Vol. 9, No. 12. (2008), R179. by Alexey Antonov, Sabine Dietmann, Hans Mewes posted to metabolism book_em by cgaugain on 2009-08-21 11:06:03 as along with 14 people and 2 groups Thaverkamp ptrobajo jfr bluto sylvainforet Stew Cortel Zephyrus guhjy neils cmzmasek fgibson dullhunk druvus Bioinformatics - CRUK Roswell Cancer Crosstalk
	Integration and cross-validation of high-throughput gene expression data: comparing heterogeneous data sets [My Copy] FEBS Letters, Vol. 546, No. 1. (03 July 2003), pp. 98-102. by V. Detours posted to thesis review integration by cgaugain on 2009-08-19 14:51:48 as
	Metabolic pathways in the post-genome era [My Copy] Trends in Biochemical Sciences, Vol. 28, No. 5. (May 2003), pp. 250-258. by J. Papin posted to book_em integration thesis by cgaugain on 2009-08-03 14:59:22 as along with 4 people pjmaybank lflorez eweaver tny
	Integrating ‘omic’ information: a bridge between genomics and systems biology [My Copy] Trends in Genetics, Vol. 19, No. 10. (October 2003), pp. 551-560. by Hui Ge, Albertha J. M. Walhout, Marc Vidal posted to book_em integration thesis by cgaugain on 2009-07-30 09:22:11 as along with 2 people maburkitt maralena
	From genomes to systems: the path with yeast. [My Copy] Philosophical transactions of the Royal Society of London. Series B, Biological sciences, Vol. 361, No. 1467. (29 March 2006), pp. 477-482. by S. G. Oliver posted to book_em yeast by cgaugain on 2009-07-07 12:02:45 as along with 3 people schwartzjmc alexg dullhunk
	An Introduction to Metabolic Networks and Their Structural Analysis [My Copy] IEEE/ACM Transactions on Computational Biology and Bioinformatics In Computational Biology and Bioinformatics, IEEE/ACM Transactions on, Vol. 5, No. 4. (2008), pp. 594-617. by Vincent Lacroix, Ludovic Cottret, Patricia Thébault, Marie F. Sagot posted to structure review network modularity metabolism community-detection book_em by cgaugain on 2009-07-06 09:11:14 as along with 4 people ptrobajo yujiangwang nsamways AbnerCYH
	Comparative Study on A Class of Evaluation Indices for Community Detection [My Copy] In OPTIMIZATION AND SYSTEMS BIOLOGY, PROCEEDINGS (2008) by Junhua Zhang, Shihua Zhang, Xiang-Sun Zhang posted to community-detection comparison density-value modularity by cgaugain on 2009-06-30 11:41:07 as
	Local modularity measure for network clusterizations [My Copy] (13 Oct 2005) by Stefanie Muff, Francesco Rao, Amedeo Caflisch posted to community-detection local-modularity modularity network by cgaugain on 2009-06-30 11:34:36 as
	Genetic Algorithms in Search, Optimization and Machine Learning [My Copy] (1989) by David E. Goldberg posted to genetic-algo by cgaugain on 2009-06-30 11:26:06 as along with 4 people santi515 fragglberri elvinado pawelt
	Integration of genomic and metabonomic data in systems biology--are we 'there' yet? [My Copy] Current opinion in drug discovery & development, Vol. 9, No. 1. (January 2006), pp. 92-100. by C. E. Thomas, G. Ganji posted to book_em by cgaugain on 2009-06-26 18:19:38 as
	Correlation network analysis for data integration and biomarker selection. [My Copy] Molecular bioSystems, Vol. 4, No. 3. (March 2008), pp. 249-259. by A. Adourian, E. Jennings, R. Balasubramanian, et al.W. M. Hines, D. Damian, T. N. Plasterer, C. B. Clish, P. Stroobant, R. McBurney, E. R. Verheij, I. Bobeldijk, J. van der Greef, J. Lindberg, K. Kenne, U. Andersson, H. Hellmold, K. Nilsson, H. Salter, I. Schuppe-Koistinen posted to book_em by cgaugain on 2009-06-26 18:13:43 as along with 2 people guhjy aconesa
	Correspondence of function and phylogeny of ABC proteins based on an automated analysis of 20 model protein data sets [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 61, No. 4. (2005), pp. 888-899. by Georg Fuellen, Michael Spitzer, Paul Cullen, Stefan Lorkowski posted to abc eukaryotes functions homology phylogeny transporters by cgaugain on 2009-06-26 11:26:11 as
	The ATP-binding cassette family: a structural perspective [My Copy] Cellular and Molecular Life Sciences by Veronica Kos, Robert Ford posted to abc structure transporters by cgaugain on 2009-06-26 11:18:19 as along with 1 person viktor21614
	ABC Transporters in Microorganisms: Research, Innovation and Value as Targets against Drug Resistance [My Copy] In ABC Transporters in Microorganisms: Research, Innovation and Value as Targets against Drug Resistance (August 2009) edited by Alicia Ponte-Sucre posted to abc drug-resistance microorganisms transporters by cgaugain on 2009-06-26 11:02:19 as
	ABC transporters: the power to change [My Copy] Nature Reviews Molecular Cell Biology, Vol. 10, No. 3., pp. 218-227. by Douglas C. Rees, Eric Johnson, Oded Lewinson posted to abc structure transporters by cgaugain on 2009-06-26 10:19:01 as
	An information-theoretic framework for resolving community structure in complex networks [My Copy] PNAS, Vol. 104, No. 18. (1 May 2007), pp. 7327-7331. by Martin Rosvall, Carl T. Bergstrom posted to community-detection information-theory modularity by cgaugain on 2009-06-17 10:47:55 as along with 8 people vtraag Kovanen dakelley saket paultr AbnerCYH marcio carlk
	Maps of random walks on complex networks reveal community structure [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 4. (29 January 2008), pp. 1118-1123. by Martin Rosvall, Carl T. Bergstrom posted to community-detection modularity structure by cgaugain on 2009-06-17 10:39:32 as along with 22 people Borelli davidecellai jsaramak normaali daforerog apocapoc Kovanen vtraag yzhang haewoon lynnefox misc jonesn lfriedl stringertheory cjeans cactus hannu roys maralena Diego_Prada lmichan
	A systems biology approach to study glucose repression in the yeast Saccharomyces cerevisiae. [My Copy] Biotechnology and bioengineering, Vol. 96, No. 1. (1 January 2007), pp. 134-145. by Steen Lund L. Westergaard, Ana Paula P. Oliveira, Christoffer Bro, Lisbeth Olsson, Jens Nielsen posted to book_em metabolism by cgaugain on 2009-06-04 15:19:07 as along with 1 person mqbphcw3
	Flux balance analysis of a genome-scale yeast model constrained by exometabolomic data allows metabolic system identification of genetically different strains. [My Copy] Biotechnol Prog, Vol. 23, No. 2. (r 2007), pp. 320-326. by T. Cakir, C. Efe, D. Dikicioglu, A. Hortaçsu, B. Kirdar, S. G. Oliver posted to book_em metabolism by cgaugain on 2009-06-04 15:16:18 as along with 3 people schwartzjmc michaelbarton alexg
	Pathway mapping tools for analysis of high content data. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 356 (2007), pp. 319-350. by S. Ekins, Y. Nikolsky, A. Bugrim, E. Kirillov, T. Nikolskaya posted to book_em metabolism review by cgaugain on 2009-06-04 14:56:45 as along with 3 people and 1 group thomaskelder shikin AlexanderPico GeneGo
	A systems biology approach for pathway level analysis [My Copy] Genome Research, Vol. 17, No. 10. (4 October 2007), pp. 1537-1545. by Sorin Draghici, Purvesh Khatri, Adi L. Tarca, et al.Kashyap Amin, Arina Done, Calin Voichita, Constantin Georgescu, Roberto Romero posted to book_em metabolism thesis by cgaugain on 2009-06-04 11:19:42 as along with 22 people and 2 groups zufar bertelsen tonamswish gbloeb ptrobajo pengchy tmmurali dragonrez jfr gurkanbebek grahamc shigepong zwang cabbagezs cerami xingxu shikin idonaldson Pao-Yang thomaskelder heliopais AlexanderPico Bioinformatics OPIG
	ABC transporters: physiology, structure and mechanism--an overview. [My Copy] Research in microbiology, Vol. 152, No. 3-4. (y 2001), pp. 205-210. by C. F. Higgins posted to abc structure transporters by cgaugain on 2009-04-24 14:30:51 as
	The mechanism of ABC transporters: general lessons from structural and functional studies of an antigenic peptide transporter. [My Copy] The FASEB journal : official publication of the Federation of American Societies for Experimental Biology (27 January 2009) by Erik Procko, Megan L L. O'Mara, W F Drew F. Bennett, D Peter P. Tieleman, Rachelle Gaudet posted to abc antigenic-peptide peptides transporters by cgaugain on 2009-02-27 09:43:52 as along with 2 people guhjy priyaps
	Lack of genomic evidence of AI-2 receptors suggests a non-quorum sensing role for luxS in most bacteria [My Copy] BMC Microbiology, Vol. 8 (20 September 2008), 154. by Fabio Rezzonico, Brion Duffy posted to abc ai-2-receptors transporters by cgaugain on 2009-02-13 10:48:57 as
	A Genomic Perspective on Protein Families [My Copy] Science, Vol. 278, No. 5338. (24 October 1997), pp. 631-637. by Roman L. Tatusov, Eugene V. Koonin, David J. Lipman posted to classification clustering cog homology orthology prokaryotes by cgaugain on 2009-01-26 13:46:38 as along with 3 people calderonv arve tfogal
	The COG database: an updated version includes eukaryotes [My Copy] BMC Bioinformatics, Vol. 4, No. 1. (11 September 2003), 41. by Roman Tatusov, Natalie Fedorova, John Jackson, et al.Aviva Jacobs, Boris Kiryutin, Eugene Koonin, Dmitri Krylov, Raja Mazumder, Sergei Mekhedov, Anastasia Nikolskaya, B. Sridhar Rao, Sergei Smirnov, Alexander Sverdlov, Sona Vasudevan, Yuri Wolf, Jodie Yin, Darren Natale posted to classification clustering cog eukaryotes homology orthology prokaryotes by cgaugain on 2009-01-26 13:44:57 as along with 13 people and 2 groups sjcockell thegoose2 coela guhjy tharris dmp arve indigoviolet j3xucite treangen bluto westoll natstreet C. elegans / WormBase EisenLab
	The use of gene clusters to infer functional coupling. [My Copy] Proc Natl Acad Sci U S A, Vol. 96, No. 6. (16 March 1999), pp. 2896-2901. by R. Overbeek, M. Fonstein, M. D'Souza, G. D. Pusch, N. Maltsev posted to classification clustering functions genome-context homology orthology prokaryotes by cgaugain on 2009-01-26 11:12:15 as along with 2 people balajis carlk
	The transporter classification (TC) system [My Copy] Crit Rev Biochem Mol Biol., Vol. 37, No. 5. (2002), pp. 287-337. by W. Busch, M. H. Saier posted to abc classification transporters by cgaugain on 2009-01-26 09:47:54 as
	Distinguishing homologous from analogous proteins. [My Copy] Syst Zool, Vol. 19, No. 2. (June 1970), pp. 99-113. by W. M. Fitch posted to homology orthology by cgaugain on 2009-01-19 09:51:32 as along with 3 people and 2 groups sgoetz ana barry structural_bioinformatics Bioinformatics
	Further improvements in the method of testing for evolutionary homology among proteins1 [My Copy] Journal of Molecular Biology*, Vol. 49, No. 1. (April 1970), pp. 1-14. by W. Fitch posted to homology orthology by cgaugain on 2009-01-19 09:42:30 as
	Homology a personal view on some of the problems [My Copy] Trends in Genetics, Vol. 16, No. 5. (1 May 2000), pp. 227-231. by W. Fitch posted to homology orthology by cgaugain on 2009-01-16 15:18:16 as along with 5 people mtruksa jwm BioNica renatomilani deluna
	A dynamic model for diauxic growth, overflow metabolism, and AI-2-mediated cell-cell communication of <I>Salmonella</I> Typhimurium based on systems biology concepts [My Copy] Biotechnology and Bioengineering, Vol. 102, No. 1. (2009), pp. 280-293. by Astrid M. Cappuyns, Kristel Bernaerts, Jos Vanderleyden, Jan F. Van Impe posted to abc adaptation bacteria environment transporters by cgaugain on 2009-01-15 14:28:28 as
	Community Structure in Graphs [My Copy] (17 Dec 2007) by Santo Fortunato, Claudio Castellano posted to algorithm clustering community-detection comparison modularity network review by cgaugain on 2009-01-13 16:13:01 as along with 4 people and 1 group vtraag saket travieso castellano smc-infm

Note: You may cite this page as: http://www.citeulike.org/user/cgaugain

Result page: 1 2 3 Next

transporters	34
abc	31
network	31
book_em	28
community-detection	25
orthology	21
modularity	18
review	16
classification	15
metabolism	14
prokaryotes	14
thesis	13
phylogeny	11
integration	9
social	9
bacteria	8
clustering	8
eukaryotes	7
homology	7
structure	7
biological	6
functions	6
igraph	6
comparison	4
database	4
algorithm	3
cog	3
fast	3
microarray	3
tool	3
adaptation	2
archaea	2
betweenness	2
environment	2
fastgreedy	2
gene-ontology	2
genome-context	2
horizontal-transfer	2
interactions	2
thermotoga	2
yeast	2
abcmeth_article	1
ai-2-receptors	1
antigenic-peptide	1
benchmark	1
carbohydrate	1
centrality	1
density-value	1
drug-resistance	1
eigenvectors	1
genetic-algo	1
information-theory	1
local-modularity	1
mcl	1
microorganisms	1
module	1
molybdate	1
peptides	1
phylogenomic	1
pyrococcus	1
regulation	1
robustness	1
spinglass	1
tungstate	1
visualization	1
walktrap	1

cgaugain's library 131 articles Export

cgaugain's tags