PDBML: the representation of archival macromolecular structure data in XML Export

@article{john_05_pdbml, abstract = {Summary: The Protein Data Bank (PDB) has recently released versions of the PDB Exchange dictionary and the PDB archival data files in XML format collectively named PDBML. The automated generation of these XML files is driven by the data dictionary infrastructure in use at the PDB. The correspondences between the PDB dictionary and the XML schema metadata are described as well as the XML representations of PDB dictionaries and data files. Availability: The current software translated XML schema file is located at http://deposit.pdb.org/pdbML/pdbx-v1.000.xsd, and on the PDB mmCIF resource page at http://deposit.pdb.org/mmcif/. PDBML files are stored on the PDB beta ftp site at ftp://beta.rcsb.org/pub/pdb/uniformity/data/XML Contact: jwest@rcsb.rutgers.edu 10.1093/bioinformatics/bti082}, author = {John, Westbrook and Nobutoshi, Ito and Haruki, Nakamura and Kim, Henrick and Berman, M.}, citeulike-article-id = {142324}, citeulike-linkout-0 = {http://dx.doi.org/10.1093/bioinformatics/bti082}, citeulike-linkout-1 = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/21/7/988}, citeulike-linkout-2 = {http://www.ingentaconnect.com/content/oup/cabios/2005/00000021/00000007/art00988}, citeulike-linkout-3 = {http://view.ncbi.nlm.nih.gov/pubmed/15509603}, citeulike-linkout-4 = {http://www.hubmed.org/display.cgi?uids=15509603}, citeulike-linkout-5 = {http://dx.doi.org/http://dx.doi.org/10.1093/bioinformatics/bti082}, citeulike-linkout-6 = {http://dx.doi.org/10.1093/bioinformatics/bti082}, comment = {PDBML ref.}, doi = {10.1093/bioinformatics/bti082}, issn = {1367-4803}, journal = {Bioinformatics}, keywords = {database, download, structure, toolkit}, month = {April}, number = {7}, pages = {988--992}, posted-at = {2008-08-11 13:30:08}, priority = {3}, publisher = {Oxford University Press}, title = {PDBML: the representation of archival macromolecular structure data in XML}, url = {http://dx.doi.org/10.1093/bioinformatics/bti082}, volume = {21}, year = {2005} }

TY - JOUR ID - john_05_pdbml L3 - citeulike-article-id:142324 N2 - Summary: The Protein Data Bank (PDB) has recently released versions of the PDB Exchange dictionary and the PDB archival data files in XML format collectively named PDBML. The automated generation of these XML files is driven by the data dictionary infrastructure in use at the PDB. The correspondences between the PDB dictionary and the XML schema metadata are described as well as the XML representations of PDB dictionaries and data files. Availability: The current software translated XML schema file is located at http://deposit.pdb.org/pdbML/pdbx-v1.000.xsd, and on the PDB mmCIF resource page at http://deposit.pdb.org/mmcif/. PDBML files are stored on the PDB beta ftp site at ftp://beta.rcsb.org/pub/pdb/uniformity/data/XML Contact: jwest@rcsb.rutgers.edu 10.1093/bioinformatics/bti082 IS - 7 JF - Bioinformatics SN - 1367-4803 EP - 992 TI - PDBML: the representation of archival macromolecular structure data in XML PB - Oxford University Press VL - 21 SP - 988 KW - database KW - download KW - structure KW - toolkit N1 - PDBML ref. AU - John, Westbrook AU - Nobutoshi, Ito AU - Haruki, Nakamura AU - Kim, Henrick AU - Berman, M PY - 2005/April/01/ UR - http://dx.doi.org/10.1093/bioinformatics/bti082 ER -