A comparison of MSA tools. Export

@article{essoussi_08_comparison, abstract = {Multiple sequence alignment (MSA) is essential in phylogenetic, evolutionary and functional analysis. Several MSA tools are available in the literature. Here, we use several MSA tools such as ClustalX, Align-m, T-Coffee, SAGA, ProbCons, MAFFT, MUSCLE and DIALIGN to illustrate comparative phylogenetic trees analysis for two datasets. Results show that there is no single MSA tool that consistently outperforms the rest in producing reliable phylogenetic trees.}, author = {Essoussi, N. and Boujenfa, K. and Limam, M.}, citeulike-article-id = {3430388}, citeulike-linkout-0 = {http://view.ncbi.nlm.nih.gov/pubmed/18841241}, citeulike-linkout-1 = {http://www.hubmed.org/display.cgi?uids=18841241}, comment = {Claims not a significantly large difference in quality between alignment methods.}, issn = {0973-2063}, journal = {Bioinformation}, keywords = {algorithm, alignment, proj\_assembly, proj\_interprets, review, validation}, number = {10}, pages = {452--455}, posted-at = {2008-10-20 11:14:46}, priority = {0}, title = {A comparison of MSA tools.}, url = {http://view.ncbi.nlm.nih.gov/pubmed/18841241}, volume = {2}, year = {2008} }

TY - JOUR ID - essoussi_08_comparison L3 - citeulike-article-id:3430388 N2 - Multiple sequence alignment (MSA) is essential in phylogenetic, evolutionary and functional analysis. Several MSA tools are available in the literature. Here, we use several MSA tools such as ClustalX, Align-m, T-Coffee, SAGA, ProbCons, MAFFT, MUSCLE and DIALIGN to illustrate comparative phylogenetic trees analysis for two datasets. Results show that there is no single MSA tool that consistently outperforms the rest in producing reliable phylogenetic trees. IS - 10 JF - Bioinformation SN - 0973-2063 EP - 455 TI - A comparison of MSA tools. VL - 2 SP - 452 KW - algorithm KW - alignment KW - proj_assembly KW - proj_interprets KW - review KW - validation N1 - Claims not a significantly large difference in quality between alignment methods. AU - Essoussi, N AU - Boujenfa, K AU - Limam, M PY - 2008/// UR - http://view.ncbi.nlm.nih.gov/pubmed/18841241 ER -