STRING 8--a global view on proteins and their functional interactions in 630 organisms Export

@article{jensen_09_string, abstract = {Functional partnerships between proteins are at the core of complex cellular phenotypes, and the networks formed by interacting proteins provide researchers with crucial scaffolds for modeling, data reduction and annotation. STRING is a database and web resource dedicated to protein-protein interactions, including both physical and functional interactions. It weights and integrates information from numerous sources, including experimental repositories, computational prediction methods and public text collections, thus acting as a meta-database that maps all interaction evidence onto a common set of genomes and proteins. The most important new developments in STRING 8 over previous releases include a URL-based programming interface, which can be used to query STRING from other resources, improved interaction prediction via genomic neighborhood in prokaryotes, and the inclusion of protein structures. Version 8.0 of STRING covers about 2.5 million proteins from 630 organisms, providing the most comprehensive view on protein-protein interactions currently available. STRING can be reached at http://string-db.org/. 10.1093/nar/gkn760}, author = {Jensen, Lars J. and Kuhn, Michael and Stark, Manuel and Chaffron, Samuel and Creevey, Chris and Muller, Jean and Doerks, Tobias and Julien, Philippe and Roth, Alexander and Simonovic, Milan and Bork, Peer and von Mering, Christian}, citeulike-article-id = {3454256}, citeulike-linkout-0 = {http://dx.doi.org/10.1093/nar/gkn760}, citeulike-linkout-1 = {http://nar.oxfordjournals.org/content/37/suppl_1/D412.abstract}, citeulike-linkout-2 = {http://nar.oxfordjournals.org/content/37/suppl_1/D412.full.pdf}, citeulike-linkout-3 = {http://nar.oxfordjournals.org/cgi/content/abstract/37/suppl_1/D412}, citeulike-linkout-4 = {http://view.ncbi.nlm.nih.gov/pubmed/18940858}, citeulike-linkout-5 = {http://www.hubmed.org/display.cgi?uids=18940858}, comment = {The most important new developments in STRING 8 over previous releases include a URL-based programming interface, which can be used to query STRING from other resources, ...}, day = {1}, doi = {10.1093/nar/gkn760}, issn = {1362-4962}, journal = {Nucl. Acids Res.}, keywords = {annotation, data\_integration, data\_mining, database, embl, networks, ppi}, month = {January}, number = {suppl\_1}, pages = {D412--416}, posted-at = {2009-02-01 19:31:10}, priority = {3}, title = {STRING 8--a global view on proteins and their functional interactions in 630 organisms}, url = {http://dx.doi.org/10.1093/nar/gkn760}, volume = {37}, year = {2009} }

TY - JOUR ID - jensen_09_string L3 - citeulike-article-id:3454256 N2 - Functional partnerships between proteins are at the core of complex cellular phenotypes, and the networks formed by interacting proteins provide researchers with crucial scaffolds for modeling, data reduction and annotation. STRING is a database and web resource dedicated to protein-protein interactions, including both physical and functional interactions. It weights and integrates information from numerous sources, including experimental repositories, computational prediction methods and public text collections, thus acting as a meta-database that maps all interaction evidence onto a common set of genomes and proteins. The most important new developments in STRING 8 over previous releases include a URL-based programming interface, which can be used to query STRING from other resources, improved interaction prediction via genomic neighborhood in prokaryotes, and the inclusion of protein structures. Version 8.0 of STRING covers about 2.5 million proteins from 630 organisms, providing the most comprehensive view on protein-protein interactions currently available. STRING can be reached at http://string-db.org/. 10.1093/nar/gkn760 IS - suppl_1 JF - Nucl. Acids Res. SN - 1362-4962 EP - 416 TI - STRING 8--a global view on proteins and their functional interactions in 630 organisms VL - 37 SP - D412 KW - annotation KW - data_integration KW - data_mining KW - database KW - embl KW - networks KW - ppi N1 - The most important new developments in STRING 8 over previous releases include a URL-based programming interface, which can be used to query STRING from other resources, ... AU - Jensen, Lars AU - Kuhn, Michael AU - Stark, Manuel AU - Chaffron, Samuel AU - Creevey, Chris AU - Muller, Jean AU - Doerks, Tobias AU - Julien, Philippe AU - Roth, Alexander AU - Simonovic, Milan AU - Bork, Peer AU - von Mering, Christian PY - 2009/01/01/ UR - http://dx.doi.org/10.1093/nar/gkn760 ER -