chad_davis's alignment [19 articles] Export

Recent papers added to chad_davis's library classified by the tag alignment. You can also see everyone's alignment.

	Multiple Alignment of protein structures and sequences for VMD. [My Copy] Bioinformatics (8 December 2005) by John Eargle, Dan Wright, Zaida Luthey-Schulten posted to alignment download structure by chad_davis on 2008-12-29 16:25:02 as along with 2 people BragilMassoud kaarsinogen
	The meaning of alignment: lessons from structural diversity [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Walter Pirovano, Anton K. Feenstra, Jaap Heringa posted to alignment evolution structure validation by chad_davis on 2008-12-27 18:35:07 as along with 13 people pimmy swtimmer dimka mhamada reyez treangen markusd j3xucite nuin kshameer druvus taguchi pansapiens
	A comparison of MSA tools. [My Copy] Bioinformation, Vol. 2, No. 10. (2008), pp. 452-455. by N. Essoussi, K. Boujenfa, M. Limam posted to algorithm alignment proj_assembly proj_interprets review validation by chad_davis on 2008-10-20 11:14:46 as along with 1 person jwm
	Optimal contact map alignment of protein-protein interfaces. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 20. (15 October 2008), pp. 2324-2328. by V. Pulim, B. Berger, J. Bienkowska posted to algorithm alignment binding complexes ppi proj_interprets structure by chad_davis on 2008-10-09 18:28:32 as along with 1 person i000
	Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structures. [My Copy] BMC Bioinformatics, Vol. 5 (9 January 2004) by V. Alexandrov, M. Gerstein posted to algorithm alignment download structure by chad_davis on 2008-08-29 22:01:20 as along with 1 person Evangelia
	Memory-efficient dynamic programming backtrace and pairwise local sequence alignment. [My Copy] Bioinformatics (Oxford, England) (17 June 2008) by Lee A. A. Newberg posted to algorithm alignment download by chad_davis on 2008-08-12 14:21:27 as along with 4 people ilyashl GustavoLacerda stajich nuin
	Identifying DNA and protein patterns with statistically significant alignments of multiple sequences. [My Copy] Bioinformatics (Oxford, England), Vol. 15, No. 7-8. (1 July 1999), pp. 563-577. by Gz Hertz, Gd Stormo posted to algorithm alignment download gene_regulation proj_credo statistics by chad_davis on 2008-07-06 17:25:57 as along with 8 people and 1 group megraw tonamswish wowalz yylin tuck indigoviolet dquest lusk EisenLab
	Designing succinct structural alphabets [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i182-189. by Shuai C. Li, Dongbo Bu, Xin Gao, Jinbo Xu, Ming Li posted to algorithm alignment annotation chemistry feature_selection proj_assembly structure by chad_davis on 2008-07-05 16:11:37 as along with 1 person marck
	Homology-based modeling of 3D structures of protein-protein complexes using alignments of modified sequence profiles. [My Copy] International journal of biological macromolecules (21 May 2008) by Petras J. J. Kundrotas, Marc F. F. Lensink, Emil Alexov posted to algorithm alignment complexes data_integration modelling proj_assembly structure binding by chad_davis on 2008-06-29 11:15:36 as along with 1 group structural_bioinformatics
	Structural characterization of components of protein assemblies by comparative modeling and electron cryo-microscopy. [My Copy] Journal of structural biology, Vol. 149, No. 2. (February 2005), pp. 191-203. by M. Topf, M. L. Baker, B. John, W. Chiu, A. Sali posted to algorithm alignment complexes data_integration modelling proj_assembly structure by chad_davis on 2008-05-28 10:37:06 as along with 1 person and 1 group gcaltabiano structural_bioinformatics
	BLOSUM62 miscalculations improve search performance [My Copy] Nature Biotechnology, Vol. 26, No. 3. (2008), pp. 274-275. by Mark P. Styczynski, Kyle L. Jensen, Isidore Rigoutsos, Gregory Stephanopoulos posted to alignment review statistics by chad_davis on 2008-05-18 13:14:46 as along with 5 people jfr dullhunk zwang ptrobajo bpcusack
	A new protein linear motif benchmark for multiple sequence alignment software. [My Copy] BMC bioinformatics, Vol. 9 (25 April 2008), 213. by Emmanuel Perrodou, Claudia Chica, Olivier Poch, Toby J. Gibson, Julie D. Thompson posted to alignment disorder embl review validation by chad_davis on 2008-05-04 10:10:39 as along with 3 people chica niallhaslam biehl
	PISCES: recent improvements to a PDB sequence culling server. [My Copy] Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005) by G. Wang, R. L. Dunbrack posted to alignment database data_integration non-redundant proj_assembly structure service by chad_davis on 2008-04-28 15:45:08 as along with 5 people newton1234 kaarsinogen bicko blackbart chgjb
	A note on difficult structure alignment problems [My Copy] Bioinformatics, Vol. 24, No. 3. (1 February 2008), pp. 426-427. by Manfred J. Sippl, Markus Wiederstein posted to alignment evolution review structure service by chad_davis on 2008-01-31 16:11:26 as along with 3 people reyez mclarenv janasont
	The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution. [My Copy] Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007) by L. H. Greene, T. E. Lewis, S. Addou, et al.A. Cuff, T. Dallman, M. Dibley, O. Redfern, F. Pearl, R. Nambudiry, A. Reid, I. Sillitoe, C. Yeats, J. M. Thornton, C. A. Orengo posted to algorithm alignment annotation classic database ensemble evolution non-redundant structure by chad_davis on 2008-01-31 15:02:56 as along with 2 people and 1 group tjimenez jlh64 References for 3DSim paper
	The MPI Bioinformatics Toolkit for protein sequence analysis. [My Copy] Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006) by A. Biegert, C. Mayer, M. Remmert, J. Söding, A. N. Lupas posted to algorithm alignment modelling mpi service by chad_davis on 2008-01-24 10:07:12 as along with 5 people operon druvus daforerog moborg grottenolm
	SeqAn - An efficient, generic C++ library for sequence analysis [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Andreas Doring, David Weese, Tobias Rausch, Knut Reinert posted to algorithm alignment toolkit by chad_davis on 2008-01-10 12:53:02 as along with 15 people MarcelSchulz n00c druvus mmartin dquest daforerog groepl guhjy laughcry ryanraaum nklee barriot mailund magusina reyez
	PALI-a database of Phylogeny and ALIgnment of homologous protein structures. [My Copy] Nucleic Acids Res, Vol. 29, No. 1. (1 January 2001), pp. 61-65. by S. Balaji, S. Sujatha, S. S. Kumar, N. Srinivasan posted to alignment classification database evolution structure by chad_davis on 2007-08-21 10:06:00 as along with 1 person semin
	Iterated profile searches with PSI-BLAST--a tool for discovery in protein databases. [My Copy] Trends Biochem Sci, Vol. 23, No. 11. (November 1998), pp. 444-447. by S. F. Altschul, E. V. Koonin posted to algorithm alignment classic download evolution statistics service by chad_davis on 2007-04-16 16:04:17 as along with 2 people cerca newton1234

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structure	236
binding	152
algorithm	136
review	112
embl	98
proj_disocons	82
database	81
complexes	80
classic	79
classification	79
proj_assembly	66
evolution	64
statistics	64
networks	58
disorder	53
modelling	49
service	46
feature_selection	44
ppi	42
proj_credo	40
data_integration	36
download	36
gene_regulation	30
yeast	29
annotation	28
proj_interprets	27
toolkit	25
validation	24
clustering	22
experimental	20
alignment	19
microarray	18
disease	16
chemistry	15
non-redundant	12
proj_stabperf	11
ensemble	10
data_mining	9
mpi	9
docking	8
drug	7
proj_cct	6
proj_bachelor	4
distributed	3

chad_davis's alignment [19 articles] Export

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