chad_davis's annotation [28 articles] Export

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	STRING 8--a global view on proteins and their functional interactions in 630 organisms [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_1. (1 January 2009), pp. D412-416. by Lars J. Jensen, Michael Kuhn, Manuel Stark, et al.Samuel Chaffron, Chris Creevey, Jean Muller, Tobias Doerks, Philippe Julien, Alexander Roth, Milan Simonovic, Peer Bork, Christian von Mering posted to annotation data_integration data_mining database embl networks ppi by chad_davis on 2009-02-01 19:31:10 as along with 15 people and 1 group carlk mitko ilyashl hagechouchin443 lptolik kshameer allysonlister larsjuhljensen druvus guhjy renatomilani grahamc behindtherabbit kgutwin biehl Bioinformatics
	ProtorP: A Protein-Protein Interaction Analysis Server [My Copy] Bioinformatics (11 November 2008), btn584. by Christopher Reynolds, David Damerell, Susan Jones posted to annotation binding proj_assembly proj_interprets service structure by chad_davis on 2009-01-31 18:25:28 as along with 7 people and 1 group idoerg bicko barry behindtherabbit neils kshameer hugowill structural_bioinformatics
	A Chado case study: an ontology-based modular schema for representing genome-associated biological information [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i337-346. by Christopher J. Mungall, David B. Emmert, The F. Consortium posted to annotation data_integration database service by chad_davis on 2008-12-26 15:35:46 as along with 8 people and 1 group inesdesantiago daveGerrard druvus nlapalu natstreet jamselem guhjy orzenil BergmanLab
	The Rough Guide to In Silico Function Prediction, or How To Use Sequence and Structure Information To Predict Protein Function [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (31 October 2008), e1000160. by Marco Punta, Yanay Ofran posted to algorithm annotation classification feature_selection review structure by chad_davis on 2008-11-03 08:17:22 as along with 20 people and 1 group ucbcjbm pansapiens kiekyon Thaverkamp niallhaslam daforerog Zalanszabo bpcusack Katje joseph_x_zhou taguchi sjcockell markchen ptrobajo druvus mdstobbe giovenko nilanjanroy reyez GeeSharpMinor microbiology_nijmegen
	DBGET/LinkDB: an integrated database retrieval system. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (1998), pp. 683-694. by W. Fujibuchi, S. Goto, H. Migimatsu, et al.I. Uchiyama, A. Ogiwara, Y. Akiyama, M. Kanehisa posted to annotation classic data_integration database service by chad_davis on 2008-10-29 10:18:46 as along with 1 person Cortel
	PEDANT covers all complete RefSeq genomes. [My Copy] Nucleic acids research (21 October 2008) by Mathias C C. Walter, Thomas Rattei, Roland Arnold, et al.Ulrich Güldener, Martin Münsterkötter, Karamfilka Nenova, Gabi Kastenmüller, Patrick Tischler, Andreas Wölling, Andreas Volz, Norbert Pongratz, Ralf Jost, Hans-Werner W. Mewes, Dmitrij Frishman posted to algorithm annotation classic data_integration database service by chad_davis on 2008-10-27 12:35:52 as along with 1 person guhjy
	The Protein Feature Ontology: a tool for the unification of protein feature annotations. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 23. (1 December 2008), pp. 2767-2772. by G. A. Reeves, K. Eilbeck, M. Magrane, et al.C. O'Donovan, L. Montecchi-Palazzi, M. A. Harris, S. Orchard, R. C. Jimenez, A. Prlic, T. J. Hubbard, H. Hermjakob, J. M. Thornton posted to annotation data_integration embl by chad_davis on 2008-10-27 12:02:11 as along with 12 people and 2 groups timhubbard TRHvidsten idoerg nlapalu fgibson zimbo1 barriot guhjy grahamc Zephyrus i000 dullhunk Roswell Cancer Crosstalk MuraLab
	CORUM: the comprehensive resource of mammalian protein complexes. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (11 January 2008), pp. D646-650. by Andreas Ruepp, Barbara Brauner, Irmtraud Dunger-Kaltenbach, et al.Goar Frishman, Corinna Montrone, Michael Stransky, Brigitte Waegele, Thorsten Schmidt, Octave Noubibou N. Doudieu, Volker Stümpflen, H. Werner Mewes posted to annotation complexes database ppi proj_assembly by chad_davis on 2008-10-20 13:57:58 as along with 6 people dragonrez poirel carlk tmmurali guhjy shung
	Improved network-based identification of protein orthologs. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008) by N. Yosef, R. Sharan, W. S. Noble posted to algorithm annotation clustering evolution networks proj_assembly by chad_davis on 2008-10-15 09:16:29 as along with 1 person grahamc
	Structure-Guided Comparative Analysis of Proteins: Principles, Tools, and Applications for Predicting Function [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000151. by Raja Mazumder, Sona Vasudevan posted to annotation review structure by chad_davis on 2008-10-09 17:31:00 as along with 9 people and 2 groups i000 pengchy raik zwang druvus reyez mdstobbe barry jameswasmuth structural_bioinformatics Bioinformatics
	Moonlighting proteins. [My Copy] Trends in biochemical sciences, Vol. 24, No. 1. (January 1999), pp. 8-11. by C. J. Jeffery posted to annotation classic evolution ppi review by chad_davis on 2008-10-07 10:24:13 as along with 2 people druvus dullhunk
	A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences. [My Copy] BMC bioinformatics, Vol. 9 (06 May 2008), 229. by Claudia Chica, Alberto Labarga, Cathryn M. Gould, Rodrigo Lopez, Toby J. Gibson posted to algorithm annotation classification disorder embl evolution ppi statistics service by chad_davis on 2008-10-06 12:49:02 as along with 6 people chica niallhaslam Evangelia cabbagesofdoom biehl alanrw
	Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by Andrew Bordner, Andrey Gorin posted to annotation binding clustering database non-redundant proj_assembly proj_interprets structure service by chad_davis on 2008-09-16 10:09:39 as along with 6 people somak bicko robfsouza guhjy neils phoenixzxl
	Getting Started in Text Mining [My Copy] PLoS Comput Biol, Vol. 4, No. 1. (25 January 2008), e20. by Bretonnel K. Cohen, Lawrence Hunter posted to annotation classification data_integration data_mining by chad_davis on 2008-08-11 15:22:33 as along with 9 people and 1 group kiekyon NIlz druvus vkwn svozil dullhunk sobolevnrm livingthingdan fgibson baker-group
	Inference of macromolecular assemblies from crystalline state. [My Copy] Journal of molecular biology, Vol. 372, No. 3. (21 September 2007), pp. 774-797. by E. Krissinel, K. Henrick posted to algorithm annotation complexes database embl proj_assembly structure validation binding service by chad_davis on 2008-07-13 16:28:44 as along with 3 people marti rico bicko
	Exploring the structure and function paradigm [My Copy] Current Opinion in Structural Biology In Nucleic acids / Sequences and topology, Vol. 18, No. 3. (June 2008), pp. 394-402. by Oliver C. Redfern, Benoit Dessailly, Christine A. Orengo posted to algorithm annotation classification evolution review structure by chad_davis on 2008-07-09 14:50:49 as along with 8 people and 1 group dfdong yylin bdessailly robfsouza guhjy paulschlesinger marck janasont Orengo Group Journal Picks
	Designing succinct structural alphabets [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i182-189. by Shuai C. Li, Dongbo Bu, Xin Gao, Jinbo Xu, Ming Li posted to algorithm alignment annotation chemistry feature_selection proj_assembly structure by chad_davis on 2008-07-05 16:11:37 as along with 1 person marck
	Alternative splicing and protein structure evolution. [My Copy] Nucleic Acids Res, Vol. 36, No. 2. (February 2008), pp. 550-558. by F. Birzele, G. Csaba, R. Zimmer posted to annotation evolution gene_regulation structure by chad_davis on 2008-06-18 12:00:48 as along with 3 people bootsy msierk balicea
	Biological units and their effect upon the properties and prediction of protein-protein interactions. [My Copy] J Mol Biol, Vol. 364, No. 5. (15 December 2006), pp. 1118-1129. by E. R. Jefferson, T. P. Walsh, G. J. Barton posted to annotation clustering complexes data_integration non-redundant proj_assembly review structure binding by chad_davis on 2008-04-21 12:40:18 as along with 1 person bicko
	The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution. [My Copy] Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007) by L. H. Greene, T. E. Lewis, S. Addou, et al.A. Cuff, T. Dallman, M. Dibley, O. Redfern, F. Pearl, R. Nambudiry, A. Reid, I. Sillitoe, C. Yeats, J. M. Thornton, C. A. Orengo posted to algorithm alignment annotation classic database ensemble evolution non-redundant structure by chad_davis on 2008-01-31 15:02:56 as along with 2 people and 1 group tjimenez jlh64 References for 3DSim paper
	SCOPPI: a structural classification of protein-protein interfaces. [My Copy] Nucleic acids research, Vol. 34, No. Database issue. (1 January 2006) by C. Winter, A. Henschel, W. K. Kim, M. Schroeder posted to annotation classification clustering complexes database binding by chad_davis on 2007-08-15 12:12:11 as along with 10 people and 4 groups winterschlaefer higueruelo sjcockell ana kuhn bicko marcius choonpeng Evangelia kintoki structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	CATH--a hierarchic classification of protein domain structures. [My Copy] Structure (London, England : 1993), Vol. 5, No. 8. (15 August 1997), pp. 1093-1108. by C. A. Orengo, A. D. Michie, S. Jones, D. T. Jones, M. B. Swindells, J. M. Thornton posted to algorithm annotation classic classification database embl evolution structure service by chad_davis on 2007-08-07 12:41:10 as along with 14 people and 4 groups ucbcjbm flbarroso kumar_physics semin sebk tjimenez dimka jwm Einat caporaso massivemayhem sim82 jteyra gulkur structural_bioinformatics Radiation_Damage Stressosome biomedical-nlp
	Partitioning Protein Structures into Domains: Why Is it so Difficult? [My Copy] Journal of Molecular Biology, Vol. 361, No. 3. (18 August 2006), pp. 562-590. by Timothy A. Holland, Stella Veretnik, Ilya N. Shindyalov, Philip E. Bourne posted to algorithm annotation classification review structure by chad_davis on 2007-08-07 11:30:36 as along with 2 people and 2 groups marcius tny BioinfoCIPF SGU-CIPF
	Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. [My Copy] Nature, Vol. 447, No. 7146. (14 June 2007), pp. 799-816. by Encode Consortium posted to annotation classic evolution gene_regulation proj_credo by chad_davis on 2007-07-26 16:13:18 as along with 25 people and 2 groups bartjacobse daveGerrard daforerog isimpson sharpton jessopher timhubbard scjparker polivares coela ilyashl aprasad myrtilus daed waszak guhjy jfr kengg olympos blobbybirdman shikin fpattyn yevishere elfar eskay Bioinformatics UH - Computational Biology
	Protein-Protein Interactions More Conserved within Species than across Species [My Copy] PLoS Comput Biol, Vol. 2, No. 7. (21 July 2006), e79. by Sven Mika, Burkhard Rost posted to algorithm annotation chemistry evolution modelling statistics structure validation yeast binding by chad_davis on 2007-07-24 17:12:50 as along with 8 people and 2 groups karthikraman chica RebeccaHamer robfsouza jeremymiller marcius skhadar dquest BioinfoCIPF SGU-CIPF
	The CATH protein family database: a resource for structural and functional annotation of genomes. [My Copy] Proteomics, Vol. 2, No. 1. (January 2002), pp. 11-21. by C. A. Orengo, J. E. Bray, D. W. Buchan, et al.A. Harrison, D. Lee, F. M. Pearl, I. Sillitoe, A. E. Todd, J. M. Thornton posted to annotation classification embl evolution review structure database by chad_davis on 2007-05-18 14:35:23 as along with 2 people and 1 group maria_hauser sillitoe Orengo Group Journal Picks
	E-MSD: an integrated data resource for bioinformatics. [My Copy] Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005) by S. Velankar, P. Mcneil, Mittard V. Runte, et al.A. Suarez, D. Barrell, R. Apweiler, K. Henrick posted to annotation database data_integration embl by chad_davis on 2007-05-11 10:15:47 as along with 1 person massivemayhem
	Gene Ontology: tool for the unification of biology [My Copy] Nature Genetics, Vol. 25, No. 1. (01 May 2000), pp. 25-29. by M. Ashburner, C. A. Ball, J. A. Blake, et al.D. Botstein, H. Butler, J. M. Cherry, A. P. Davis, K. Dolinski, S. S. Dwight, J. T. Eppig, M. A. Harris, D. P. Hill, Issel L. Tarver, A. Kasarskis, S. Lewis, J. C. Matese, J. E. Richardson, M. Ringwald, G. M. Rubin, G. Sherlock posted to annotation classic database by chad_davis on 2007-04-24 10:29:49 as along with 76 people and 8 groups suizan sanchezbuelna Jporci artaban421 mtaschuk niallhaslam Zephyrus nicklynch mauriceccy pmendes jperkins timhubbard ipark-kaist jeremymiller vkwn MarcoAlvarez humburg mqbphcw3 kiekyon karinlag ocs marti robert85 allysonlister daforerog chasmand lawraga jorisslob bertelsen mshossain ajbattle paszkows coela fbristow kshameer anthropomorphism nolodie dagmar Robinder verdicchio raistrick vertikalist aalibes miguel dragonrez lfriedl yas balajis indigoviolet benny dullhunk nirfriedman fisherp caporaso helliontroy zlu gurkanbebek djkt massivemayhem incovoma leechuck aconesa sgoetz javamint bootsy PunkRock natstreet naegele CitoJam pablomendes carlk marck dgront roys rvosa fongenae 8_01 BTS-PT-AS-CS kdl Bioinformatics EisenLab T_lab biomedical-nlp FAB-lab

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structure	236
binding	152
algorithm	136
review	112
embl	98
proj_disocons	82
database	81
complexes	80
classic	79
classification	79
proj_assembly	66
evolution	64
statistics	64
networks	58
disorder	53
modelling	49
service	46
feature_selection	44
ppi	42
proj_credo	40
data_integration	36
download	36
gene_regulation	30
yeast	29
annotation	28
proj_interprets	27
toolkit	25
validation	24
clustering	22
experimental	20
alignment	19
microarray	18
disease	16
chemistry	15
non-redundant	12
proj_stabperf	11
ensemble	10
data_mining	9
mpi	9
docking	8
drug	7
proj_cct	6
proj_bachelor	4
distributed	3

chad_davis's annotation [28 articles] Export

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