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	Learning to Select Features using their Properties [My Copy] Journal of Machine Learning Research, Vol. 9 (October 2008), pp. 2349-2376. by Eyal Krupka, Amir Navot, Naftali Tishby posted to algorithm classification feature_selection by chad_davis on 2008-11-03 08:25:14 as along with 3 people shpigi sdvillal jjrodriguez
	The Rough Guide to In Silico Function Prediction, or How To Use Sequence and Structure Information To Predict Protein Function [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (31 October 2008), e1000160. by Marco Punta, Yanay Ofran posted to algorithm annotation classification feature_selection review structure by chad_davis on 2008-11-03 08:17:22 as along with 18 people and 1 group kiekyon Thaverkamp niallhaslam daforerog Zalanszabo bpcusack Katje joseph_x_zhou taguchi sjcockell markchen ptrobajo druvus mdstobbe giovenko nilanjanroy reyez GeeSharpMinor microbiology_nijmegen
	Support Vector Machines and Kernels for Computational Biology [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (31 October 2008), e1000173. by Asa Ben-Hur, Cheng S. Ong, Sören Sonnenburg, Bernhard Schölkopf, Gunnar Rätsch posted to classification review statistics by chad_davis on 2008-11-03 08:15:43 as along with 32 people and 3 groups guhjy VGreiff tomhebbron ucbcjbm thegoose Zephyrus phoenixzxl winterschlaefer kshameer svozil mmartin jfr MarcoAlvarez sobolevnrm Yanno Scis0000002 srp33 GustavoLacerda nuin rdiaz dakelley rschulz Borelli taguchi kristina bayesian mdstobbe tny giovenko markchen druvus GeeSharpMinor Bioinformatics baker-group VisionLab
	A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences. [My Copy] BMC bioinformatics, Vol. 9 (06 May 2008), 229. by Claudia Chica, Alberto Labarga, Cathryn M. Gould, Rodrigo Lopez, Toby J. Gibson posted to algorithm annotation classification disorder embl evolution ppi statistics service by chad_davis on 2008-10-06 12:49:02 as along with 6 people chica niallhaslam Evangelia cabbagesofdoom biehl alanrw
	The C1C2: a framework for simultaneous model selection and assessment. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by Martin Eklund, Ola Spjuth, Jarl Wikberg posted to algorithm classification feature_selection proj_stabperf statistics validation by chad_davis on 2008-09-02 12:38:06 as along with 2 people guhjy nuin
	MotifVoter: a novel ensemble method for fine-grained integration of generic motif finders. [My Copy] Bioinformatics (Oxford, England) (12 August 2008) by Edward Wijaya, Siu, Ngo, Rajaraman Kanagasabai, Wing posted to algorithm classification ensemble gene_regulation proj_credo by chad_davis on 2008-08-26 18:08:44 as along with 5 people wowalz druvus nuin maximilianh idonaldson
	Getting Started in Text Mining [My Copy] PLoS Comput Biol, Vol. 4, No. 1. (25 January 2008), e20. by Bretonnel K. Cohen, Lawrence Hunter posted to annotation classification data_integration data_mining by chad_davis on 2008-08-11 15:22:33 as along with 10 people and 1 group lmichan kiekyon NIlz druvus vkwn svozil dullhunk sobolevnrm livingthingdan fgibson baker-group
	A comprehensive comparison of random forests and support vector machines for microarray-based cancer classification [My Copy] BMC Bioinformatics, Vol. 9 (22 July 2008), 319. by Alexander Statnikov, Lily Wang, Constantin F. Aliferis posted to classification microarray proj_stabperf review statistics validation by chad_davis on 2008-08-06 15:45:40 as along with 5 people ucbcjbm rdiaz jfr rmk mdharsee
	Exploring the structure and function paradigm [My Copy] Current Opinion in Structural Biology In Nucleic acids / Sequences and topology, Vol. 18, No. 3. (June 2008), pp. 394-402. by Oliver C. Redfern, Benoit Dessailly, Christine A. Orengo posted to algorithm annotation classification evolution review structure by chad_davis on 2008-07-09 14:50:49 as along with 7 people and 1 group yylin bdessailly robfsouza guhjy paulschlesinger marck janasont Orengo Group Journal Picks
	POIMs: positional oligomer importance matrices--understanding support vector machine-based signal detectors [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i6-14. by Soren Sonnenburg, Alexander Zien, Petra Philips, Gunnar Ratsch posted to algorithm classification ensemble proj_credo proj_disocons by chad_davis on 2008-07-05 16:29:44 as along with 2 people babakap papamicd
	Intrinsic disorder prediction from the analysis of multiple protein fold recognition models. [My Copy] Bioinformatics (Oxford, England) (25 June 2008) by Liam J. J. Mcguffin posted to algorithm classification data_integration disorder ensemble feature_selection proj_disocons structure service by chad_davis on 2008-06-29 10:59:50 as
	ROCR: visualizing classifier performance in R [My Copy] Bioinformatics, Vol. 21, No. 20. (15 October 2005), pp. 3940-3941. by Tobias Sing, Oliver Sander, Niko Beerenwinkel, Thomas Lengauer posted to classification download proj_stabperf statistics toolkit by chad_davis on 2008-05-25 13:58:18 as along with 4 people and 2 groups megraw ana balajis baldigroup structural_bioinformatics Bioinformatics
	Receiver-operating characteristic (ROC) plots: a fundamental evaluation tool in clinical medicine. [My Copy] Clin Chem, Vol. 39, No. 4. (April 1993), pp. 561-577. by M. H. Zweig, G. Campbell posted to classic classification statistics by chad_davis on 2008-04-28 16:25:01 as along with 1 person mingzhi
	POODLE-S: Web application for predicting protein disorder by using physicochemical features and reduced amino acid set of a position specific scoring matrix. [My Copy] Bioinformatics (28 June 2007) by Kana Shimizu, Shuichi Hirose, Tamotsu Noguchi posted to algorithm classification disorder feature_selection proj_disocons service by chad_davis on 2008-04-28 15:27:18 as
	Prediction of disordered regions in proteins based on the meta approach [My Copy] Bioinformatics (20 April 2008), btn195. by Takashi Ishida, Kengo Kinoshita posted to algorithm classification disorder ensemble proj_disocons structure by chad_davis on 2008-04-28 09:47:26 as along with 1 person and 1 group niallhaslam structural_bioinformatics
	Protein disorder prediction at multiple levels of sensitivity and specificity. [My Copy] BMC genomics, Vol. 9 Suppl 1 (2008) by J. Hecker, J. Y. Yang, J. Cheng posted to algorithm classification disorder proj_disocons review structure by chad_davis on 2008-04-20 11:16:25 as
	Practical strategies for discovering regulatory DNA sequence motifs. [My Copy] PLoS computational biology, Vol. 2, No. 4. (1 April 2006), e36. by Kenzie D. Macisaac, Ernest Fraenkel posted to classification ensemble gene_regulation proj_credo review by chad_davis on 2008-01-28 10:22:04 as along with 16 people and 2 groups leemond31 Dulce maximilianh heliopais daforerog natstreet druvus giovenko nuin bryankr ana balicea hggr GustavoLacerda svdate kristallreiner structural_bioinformatics Bioinformatics
	NOXclass: prediction of protein-protein interaction types. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by H. Zhu, F. S. Domingues, I. Sommer, T. Lengauer posted to classification feature_selection algorithm binding by chad_davis on 2008-01-24 16:30:44 as along with 4 people bicko conkymacro marti jteyra
	SignS: a parallelized, open-source, freely available, web-based tool for gene selection and molecular signatures for survival and censored data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Ramon D. Uriarte posted to classification feature_selection microarray proj_stabperf service by chad_davis on 2008-01-22 10:12:49 as along with 4 people guhjy aalibes frohike jfr
	A systematic comparison of protein structure classifications: SCOP, CATH and FSSP. [My Copy] Structure Fold Des, Vol. 7, No. 9. (15 September 1999), pp. 1099-1112. by C. Hadley, D. T. Jones posted to database ensemble classic classification review structure by chad_davis on 2007-12-15 09:47:54 as along with 2 people and 2 groups ana cjeans structural_bioinformatics Bioinformatics
	Fuzzy complexes: polymorphism and structural disorder in protein-protein interactions. [My Copy] Trends Biochem Sci (26 November 2007) by Peter Tompa, Monika Fuxreiter posted to proj_disocons classification complexes disorder review structure binding by chad_davis on 2007-12-09 20:23:11 as
	OSCAR: One-class SVM for Accurate Recognition of Cis-elements [My Copy] Bioinformatics (5 October 2007), btm473. by Bo Jiang, Michael Q. Zhang, Xuegong Zhang posted to algorithm proj_credo classification feature_selection gene_regulation by chad_davis on 2007-11-19 10:24:43 as along with 7 people suizifish cassj tmmurali cabbagezs maximilianh idonaldson isimpson
	fastSCOP: a fast web server for recognizing protein structural domains and SCOP superfamilies. [My Copy] Nucleic Acids Res, Vol. 35, No. Web Server issue. (1 July 2007) by C. H. Tung, J. M. Yang posted to algorithm classification non-redundant structure by chad_davis on 2007-11-16 13:24:59 as along with 1 person guhjy
	POODLE-L: a two-level SVM prediction system for reliably predicting long disordered regions [My Copy] Bioinformatics, Vol. 23, No. 16. (15 August 2007), pp. 2046-2053. by Shuichi Hirose, Kana Shimizu, Satoru Kanai, Yutaka Kuroda, Tamotsu Noguchi posted to proj_disocons classification disorder feature_selection by chad_davis on 2007-09-13 16:08:33 as
	Machine Learning and Its Applications to Biology. [My Copy] PLoS Comput Biol, Vol. 3, No. 6. (29 June 2007) by Adi L. L. Tarca, Vincent J. J. Carey, Xue, Roberto Romero, Sorin Drăghici posted to algorithm proj_credo proj_disocons proj_stabperf classification clustering review statistics by chad_davis on 2007-09-03 15:43:35 as along with 5 people and 1 group klouie jfr rsantana gsiwo groepl Bioinformatics
	PALI-a database of Phylogeny and ALIgnment of homologous protein structures. [My Copy] Nucleic Acids Res, Vol. 29, No. 1. (1 January 2001), pp. 61-65. by S. Balaji, S. Sujatha, S. S. Kumar, N. Srinivasan posted to alignment classification database evolution structure by chad_davis on 2007-08-21 10:06:00 as along with 1 person semin
	SCOPPI: a structural classification of protein-protein interfaces. [My Copy] Nucleic acids research, Vol. 34, No. Database issue. (1 January 2006) by C. Winter, A. Henschel, W. K. Kim, M. Schroeder posted to annotation classification clustering complexes database binding by chad_davis on 2007-08-15 12:12:11 as along with 10 people and 4 groups winterschlaefer higueruelo sjcockell ana kuhn bicko marcius choonpeng Evangelia kintoki structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	CATH--a hierarchic classification of protein domain structures. [My Copy] Structure (London, England : 1993), Vol. 5, No. 8. (15 August 1997), pp. 1093-1108. by C. A. Orengo, A. D. Michie, S. Jones, D. T. Jones, M. B. Swindells, J. M. Thornton posted to algorithm annotation classic classification database embl evolution structure service by chad_davis on 2007-08-07 12:41:10 as along with 14 people and 4 groups ucbcjbm flbarroso kumar_physics semin sebk tjimenez dimka jwm Einat caporaso massivemayhem sim82 jteyra gulkur structural_bioinformatics Radiation_Damage Stressosome biomedical-nlp
	Partitioning Protein Structures into Domains: Why Is it so Difficult? [My Copy] Journal of Molecular Biology, Vol. 361, No. 3. (18 August 2006), pp. 562-590. by Timothy A. Holland, Stella Veretnik, Ilya N. Shindyalov, Philip E. Bourne posted to algorithm annotation classification review structure by chad_davis on 2007-08-07 11:30:36 as along with 2 people and 2 groups marcius tny BioinfoCIPF SGU-CIPF
	Analysing Six Types of Protein-Protein Interfaces [My Copy] Journal of Molecular Biology, Vol. 325, No. 2. (10 January 2003), pp. 377-387. by Yanay Ofran, Burkhard Rost posted to chemistry classification structure binding by chad_davis on 2007-07-25 11:56:55 as along with 3 people joseolucha lpfernandes Evangelia
	Analysis of protein-protein interaction sites using surface patches. [My Copy] Journal of molecular biology, Vol. 272, No. 1. (12 September 1997), pp. 121-132. by S. Jones, J. M. Thornton posted to chemistry classification embl structure binding by chad_davis on 2007-07-25 11:51:17 as along with 3 people mgomes joseolucha cjeans
	Error bars in experimental biology [My Copy] J. Cell Biol., Vol. 177, No. 1. (9 April 2007), pp. 7-11. by Geoff Cumming, Fiona Fidler, David L. Vaux posted to classic classification gene_regulation microarray statistics validation by chad_davis on 2007-06-06 08:37:34 as along with 54 people and 5 groups inbetweener tt srmblack abhishek_tiwari druvus bangyuzhou schoeband brianb cambray dbikard rec3141 ajaymalik Gorzomagnificent daforerog sen_cheng yangjustinc maximilianh qwermish bayesian ntakano flips inesdesantiago brian ana batallah manduca kuhn Borelli dayjm kristina tny dullhunk rabu lechristophe nelmor jdelcampo fishtank emmahe lisa1 Daria_G devender bmaust cabbagezs natstreet winterschlaefer krokicki loopback007 wilbur tdmckee renatomilani delenca arindrartow guhjy mjoach structural_bioinformatics Bioinformatics VisionLab FlowCytometry Microbial-Ecology
	The CATH protein family database: a resource for structural and functional annotation of genomes. [My Copy] Proteomics, Vol. 2, No. 1. (January 2002), pp. 11-21. by C. A. Orengo, J. E. Bray, D. W. Buchan, et al.A. Harrison, D. Lee, F. M. Pearl, I. Sillitoe, A. E. Todd, J. M. Thornton posted to annotation classification embl evolution review structure database by chad_davis on 2007-05-18 14:35:23 as along with 2 people and 1 group maria_hauser sillitoe Orengo Group Journal Picks
	The ASTRAL Compendium in 2004. [My Copy] Nucleic acids research, Vol. 32, No. Database issue. (1 January 2004) by J. M. Chandonia, G. Hon, N. S. Walker, et al.L. Lo Conte, P. Koehl, M. Levitt, S. E. Brenner posted to classification clustering evolution structure database by chad_davis on 2007-04-16 13:49:48 as along with 8 people bicko shacko sgoetz sriram_s aengisch rabio siebertm saunders
	SCOP database in 2004: refinements integrate structure and sequence family data. [My Copy] Nucleic acids research, Vol. 32, No. Database issue. (1 January 2004) by A. Andreeva, D. Howorth, S. E. Brenner, T. J. Hubbard, C. Chothia, A. G. Murzin posted to classification evolution structure database by chad_davis on 2007-04-16 13:46:06 as along with 5 people timhubbard reyez tjimenez nuke2005 phoenixzxl
	SCOP: a structural classification of proteins database for the investigation of sequences and structures. [My Copy] Journal of molecular biology, Vol. 247, No. 4. (7 April 1995), pp. 536-540. by A. G. Murzin, S. E. Brenner, T. Hubbard, C. Chothia posted to classic classification clustering evolution structure database by chad_davis on 2007-04-16 13:42:49 as along with 14 people timhubbard flbarroso yuslinaz semin pjcite dimka chrn j3xucite sriram_s aengisch massivemayhem cjeans siebertm sim82
	SMART 5: domains in the context of genomes and networks. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006) by I. Letunic, R. R. Copley, B. Pils, S. Pinkert, J. Schultz, P. Bork posted to classic classification disorder embl proj_disocons service by chad_davis on 2007-04-02 19:40:37 as along with 1 person siebertm
	The relationship between sequence and interaction divergence in proteins. [My Copy] Journal of molecular biology, Vol. 332, No. 5. (3 October 2003), pp. 989-998. by P. Aloy, H. Ceulemans, A. Stark, R. B. Russell posted to classification embl evolution structure binding by chad_davis on 2007-03-26 14:52:33 as along with 7 people chica bpcusack karbak bicko drastic ruvido RebeccaHamer
	3D complex: a structural classification of protein complexes. [My Copy] PLoS computational biology, Vol. 2, No. 11. (17 November 2006) by E. D. Levy, Pereira J. B. Leal, C. Chothia, S. A. Teichmann posted to classification non-redundant structure database binding by chad_davis on 2007-03-21 12:46:03 as along with 3 people and 1 group flbarroso bicko Einat structural_bioinformatics
	Structure prediction. How good are we? [My Copy] Curr Biol, Vol. 5, No. 5. (1 May 1995), pp. 488-490. by R. B. Russell, M. J. Sternberg posted to validation structure review embl classification by chad_davis on 2007-02-05 13:22:19 as
	Classification of protein folds. [My Copy] Mol Biotechnol, Vol. 20, No. 1. (January 2002), pp. 17-28. by R. B. Russell posted to review evolution embl classification algorithm by chad_davis on 2007-02-05 13:20:58 as
	Knowledge discovery and knowledge validation in intensive care. [My Copy] Artif Intell Med, Vol. 19, No. 3. (July 2000), pp. 225-249. by K. Morik, M. Imhoff, P. Brockhausen, T. Joachims, U. Gather, M. Imboff posted to validation classification algorithm proj_disocons by chad_davis on 2007-01-25 19:38:46 as
	Automated structure-based prediction of functional sites in proteins: applications to assessing the validity of inheriting protein function from homology in genome annotation and to protein docking. [My Copy] J Mol Biol, Vol. 311, No. 2. (10 August 2001), pp. 395-408. by P. Aloy, E. Querol, F. X. Aviles, M. J. Sternberg posted to structure embl classification by chad_davis on 2007-01-16 16:16:56 as along with 6 people ramiro2k kaarsinogen chrn bicko sriram_s cjeans
	PHD -- an automatic mail server for protein secondary structure prediction. [My Copy] Comput Appl Biosci, Vol. 10, No. 1. (February 1994), pp. 53-60. by B. Rost, C. Sander, R. Schneider posted to classic classification structure proj_disocons service by chad_davis on 2007-01-09 14:19:05 as along with 2 people j3xucite dgront
	Protein secondary structure prediction based on position-specific scoring matrices. [My Copy] Journal of molecular biology, Vol. 292, No. 2. (17 September 1999), pp. 195-202. by D. T. Jones posted to classic classification structure proj_disocons by chad_davis on 2007-01-08 13:56:07 as along with 11 people rpetrenko kgutwin pjcite wouterboomsma j3xucite dgront rabio rph dandaman saunders granujilla
	SVM ensemble algorithm for regulatory motif detection [My Copy] (2007) by Chad A. Davis, Michael Lidschreiber posted to classification algorithm proj_credo by chad_davis on 2007-01-01 17:41:10 as
	Consenus Disorder Prediction [My Copy] (2005) by Burnham posted to classification disorder proj_disocons by chad_davis on 2006-12-31 14:55:18 as
	A modified definition of Sov, a segment-based measure for protein secondary structure prediction assessment. [My Copy] Proteins, Vol. 34, No. 2. (1 February 1999), pp. 220-223. by A. Zemla, C. Venclovas, K. Fidelis, B. Rost posted to classification statistics structure validation by chad_davis on 2006-12-29 14:40:45 as
	FoldUnfold: web server for the prediction of disordered regions in protein chain [My Copy] Bioinformatics, Vol. 22, No. 23. (1 December 2006), pp. 2948-2949. by Oxana V. Galzitskaya, Sergiy O. Garbuzynskiy, Michail Y. Lobanov posted to classification disorder proj_disocons by chad_davis on 2006-11-18 21:05:37 as along with 1 person bobychan
	Prediction of Protein Secondary Structure at Better than 70% Accuracy [My Copy] Journal of Molecular Biology, Vol. 232, No. 2. (20 July 1993), pp. 584-599. by Burkhard Rost, Chris Sander posted to classic classification structure by chad_davis on 2006-11-18 16:53:46 as along with 2 people kgutwin svozil

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structure	236
binding	152
algorithm	136
review	112
embl	98
proj_disocons	82
database	81
complexes	80
classic	79
classification	79
proj_assembly	66
evolution	64
statistics	64
networks	58
disorder	53
modelling	49
service	46
feature_selection	44
ppi	42
proj_credo	40
data_integration	36
download	36
gene_regulation	30
yeast	29
annotation	28
proj_interprets	27
toolkit	25
validation	24
clustering	22
experimental	20
alignment	19
microarray	18
disease	16
chemistry	15
non-redundant	12
proj_stabperf	11
ensemble	10
data_mining	9
mpi	9
docking	8
drug	7
proj_cct	6
proj_bachelor	4
distributed	3

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