chad_davis's clustering [22 articles] Export

Recent papers added to chad_davis's library classified by the tag clustering. You can also see everyone's clustering.

	Improved network-based identification of protein orthologs. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008) by N. Yosef, R. Sharan, W. S. Noble posted to algorithm annotation clustering evolution networks proj_assembly by chad_davis on 2008-10-15 09:16:29 as along with 1 person grahamc
	Modifying the DPClus algorithm for identifying protein complexes based on new topological structures [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Min Li, Jianer Chen, Jianxin Wang, Bin Hu, Gang Chen posted to algorithm clustering complexes download networks proj_assembly by chad_davis on 2008-10-09 15:22:18 as along with 2 people diamantis neils
	An efficient algorithm for large-scale detection of protein families [My Copy] Nucl. Acids Res., Vol. 30, No. 7. (1 April 2002), pp. 1575-1584. by A. J. Enright, S. Van Dongen, C. A. Ouzounis posted to algorithm clustering download networks proj_assembly toolkit by chad_davis on 2008-10-08 12:48:58 as along with 22 people and 2 groups jperkins calderonv nedwards dakelley druvus treangen carlk cgaugain johanviklund camster operon knaseanka indigoviolet skhadar nirfriedman dgront entropy gcalda GustavoLacerda hpaces RebeccaHamer Borelli dbk-lab EisenLab
	GraphCrunch: a tool for large network analyses [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Tijana Milenkovic, Jason Lai, Natasa Przulj posted to algorithm clustering distributed download networks proj_assembly service by chad_davis on 2008-10-06 16:41:38 as along with 7 people grahamc laughcry barriot guhjy maralena dullhunk ptrobajo
	Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by Andrew Bordner, Andrey Gorin posted to annotation binding clustering database non-redundant proj_assembly proj_interprets structure service by chad_davis on 2008-09-16 10:09:39 as along with 6 people somak bicko robfsouza guhjy neils phoenixzxl
	PPiClust: EFFICIENT CLUSTERING OF 3D PROTEIN-PROTEIN INTERACTION INTERFACES. [My Copy] Journal of bioinformatics and computational biology, Vol. 6, No. 3. (June 2008), pp. 415-433. by Z. Aung, S. H. Tan, S. K. Ng, K. L. Tan posted to algorithm clustering ppi proj_assembly proj_interprets structure by chad_davis on 2008-08-26 18:15:46 as along with 1 person bicko
	Ensemble Non-negative Matrix Factorization Methods for Clustering Protein-Protein Interactions [My Copy] Bioinformatics (12 June 2008), btn286. by Derek Greene, Gerard Cagney, Nevan Krogan, Padraig Cunningham posted to algorithm clustering complexes ensemble proj_assembly binding by chad_davis on 2008-08-05 15:26:09 as along with 4 people colmryan svozil zwang grahamc
	Efficient algorithms for accurate hierarchical clustering of huge datasets: tackling the entire protein space [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i41-49. by Yaniv Loewenstein, Elon Portugaly, Menachem Fromer, Michal Linial posted to algorithm clustering download evolution by chad_davis on 2008-07-05 16:26:30 as along with 5 people isimpson druvus nklee sconlan nuin
	Open source clustering software. [My Copy] Bioinformatics (Oxford, England), Vol. 20, No. 9. (12 June 2004), pp. 1453-1454. by M. J. de Hoon, S. Imoto, J. Nolan, S. Miyano posted to algorithm clustering download toolkit by chad_davis on 2008-07-04 09:28:18 as along with 25 people and 7 groups dakelley rabio klexa oteri arlam ilyashl matterhorn cswinburne mtagaya macowell davidbroadhurst eme oilcan rahul Ayest balajis piscinero metamerist digisoki wnpx rafamayo atopcu ccr calu karlmicha Structural Biology Group TorVergata Fluid-Mechanics-and-Thermal-Science-Research astro SRL Computational_Systems_Biology XMLDataManagement BUiGEM
	Using indirect protein-protein interactions for protein complex prediction. [My Copy] Journal of bioinformatics and computational biology, Vol. 6, No. 3. (June 2008), pp. 435-466. by H. N. Chua, K. Ning, W. K. Sung, H. W. Leong, L. Wong posted to algorithm clustering complexes networks proj_assembly binding by chad_davis on 2008-06-29 11:14:25 as
	Biological units and their effect upon the properties and prediction of protein-protein interactions. [My Copy] J Mol Biol, Vol. 364, No. 5. (15 December 2006), pp. 1118-1129. by E. R. Jefferson, T. P. Walsh, G. J. Barton posted to annotation clustering complexes data_integration non-redundant proj_assembly review structure binding by chad_davis on 2008-04-21 12:40:18 as along with 1 person bicko
	Mapping protein family interactions: intramolecular and intermolecular protein family interaction repertoires in the PDB and yeast. [My Copy] J Mol Biol, Vol. 307, No. 3. (30 March 2001), pp. 929-938. by J. Park, M. Lappe, S. A. Teichmann posted to clustering networks non-redundant structure yeast database binding by chad_davis on 2008-02-19 13:36:37 as along with 5 people and 2 groups medic0747 ronkeliz ana tjimenez cjeans structural_bioinformatics Bioinformatics
	Identifying protein complexes directly from high-throughput TAP data with Markov random fields [My Copy] BMC Bioinformatics, Vol. 8 (19 December 2007), 482. by Wasinee Rungsarityotin, Roland Krause, Arno Schodl, Alexander Schliep posted to algorithm clustering complexes networks binding by chad_davis on 2007-12-21 13:42:25 as along with 1 person Yanno
	Coverage and error models of protein-protein interaction data by directed graph analysis [My Copy] Genome Biology, Vol. 8 (10 September 2007), R186. by Tony Chiang, Denise Scholtens, Deepayan Sarkar, Robert Gentleman, Wolfgang Huber posted to clustering embl networks review statistics validation yeast by chad_davis on 2007-09-27 16:28:59 as along with 5 people Yanno jfr grahamc winterschlaefer Pao-Yang
	Machine Learning and Its Applications to Biology. [My Copy] PLoS Comput Biol, Vol. 3, No. 6. (29 June 2007) by Adi L. L. Tarca, Vincent J. J. Carey, Xue, Roberto Romero, Sorin Drăghici posted to algorithm proj_credo proj_disocons proj_stabperf classification clustering review statistics by chad_davis on 2007-09-03 15:43:35 as along with 5 people and 1 group klouie jfr rsantana gsiwo groepl Bioinformatics
	SCOPPI: a structural classification of protein-protein interfaces. [My Copy] Nucleic acids research, Vol. 34, No. Database issue. (1 January 2006) by C. Winter, A. Henschel, W. K. Kim, M. Schroeder posted to annotation classification clustering complexes database binding by chad_davis on 2007-08-15 12:12:11 as along with 11 people and 4 groups dfdong winterschlaefer higueruelo sjcockell ana kuhn bicko marcius choonpeng Evangelia kintoki structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Prediction of multimolecular assemblies by multiple docking. [My Copy] J Mol Biol, Vol. 349, No. 2. (3 June 2005), pp. 435-447. by Y. Inbar, H. Benyamini, R. Nussinov, H. J. Wolfson posted to algorithm classic clustering modelling structure binding by chad_davis on 2007-08-08 16:11:01 as along with 1 person martainn
	Multiple sequence alignment with the Clustal series of programs [My Copy] Nucl. Acids Res., Vol. 31, No. 13. (1 July 2003), pp. 3497-3500. by R. Chenna, H. Sugawara, T. Koike, et al.R. Lopez, T. J. Gibson, D. G. Higgins, J. D. Thompson posted to algorithm classic clustering download embl evolution service by chad_davis on 2007-04-18 09:17:52 as along with 8 people and 1 group vprieto BioNica Lombardo_7 miguel beatrizfernandez raylim xingxu marck Microbial-Ecology
	The ASTRAL Compendium in 2004. [My Copy] Nucleic acids research, Vol. 32, No. Database issue. (1 January 2004) by J. M. Chandonia, G. Hon, N. S. Walker, et al.L. Lo Conte, P. Koehl, M. Levitt, S. E. Brenner posted to classification clustering evolution structure database by chad_davis on 2007-04-16 13:49:48 as along with 8 people bicko shacko sgoetz sriram_s aengisch rabio siebertm saunders
	SCOP: a structural classification of proteins database for the investigation of sequences and structures. [My Copy] Journal of molecular biology, Vol. 247, No. 4. (7 April 1995), pp. 536-540. by A. G. Murzin, S. E. Brenner, T. Hubbard, C. Chothia posted to classic classification clustering evolution structure database by chad_davis on 2007-04-16 13:42:49 as along with 14 people timhubbard flbarroso yuslinaz semin pjcite dimka chrn j3xucite sriram_s aengisch massivemayhem cjeans siebertm sim82
	Evaluation of clustering algorithms for protein-protein interaction networks [My Copy] BMC Bioinformatics, Vol. 7 (06 November 2006), 488. by Sylvain Brohee, Jacques van Helden posted to algorithm clustering networks ppi review yeast by chad_davis on 2006-11-12 15:10:20 as along with 16 people and 1 group kaarsinogen pdelosri jfr balajis nirfriedman dquest grahamc cjeans hpaces Pao-Yang oktie carlk Borelli AbnerCYH cerca ethkim EPFL_SB_ITP_LBS
	Co-clustering of biological networks and gene expression data [My Copy] Bioinformatics, Vol. 18, No. suppl_1. (1 July 2002), pp. S145-154. by D. Hanisch, A. Zien, R. Zimmer, T. Lengauer posted to clustering microarray networks by chad_davis on 2005-10-14 14:58:37 as along with 4 people poirel saket srp33 carlk

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structure	236
binding	152
algorithm	136
review	112
embl	98
proj_disocons	82
database	81
complexes	80
classic	79
classification	79
proj_assembly	66
statistics	64
evolution	64
networks	58
disorder	53
modelling	49
service	46
feature_selection	44
ppi	42
proj_credo	40
download	36
data_integration	36
gene_regulation	30
yeast	29
annotation	28
proj_interprets	27
toolkit	25
validation	24
clustering	22
experimental	20
alignment	19
microarray	18
disease	16
chemistry	15
non-redundant	12
proj_stabperf	11
ensemble	10
data_mining	9
mpi	9
docking	8
drug	7
proj_cct	6
proj_bachelor	4
distributed	3

chad_davis's clustering [22 articles] Export

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