chad_davis's disorder [53 articles] Export

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	Malleable machines in transcription regulation: the mediator complex. [My Copy] PLoS computational biology, Vol. 4, No. 12. (December 2008) by A. Tóth-Petróczy, C. J. Oldfield, I. Simon, et al.Y. Takagi, A. K. Dunker, V. N. Uversky, M. Fuxreiter posted to binding complexes disorder ppi proj_assembly proj_disocons structure by chad_davis on 2008-12-26 21:41:43 as along with 2 people siebert akraemer
	The unfoldomics decade: an update on intrinsically disordered proteins. [My Copy] BMC genomics, Vol. 9 Suppl 2 (2008) by A. K. Dunker, C. J. Oldfield, J. Meng, et al.P. Romero, J. Y. Yang, J. W. Chen, V. Vacic, Z. Obradovic, V. N. Uversky posted to binding disorder ppi proj_disocons review structure by chad_davis on 2008-10-10 17:17:41 as along with 6 people kiekyon niallhaslam robfsouza carlosjavierna guhjy higueruelo
	A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences. [My Copy] BMC bioinformatics, Vol. 9 (06 May 2008), 229. by Claudia Chica, Alberto Labarga, Cathryn M. Gould, Rodrigo Lopez, Toby J. Gibson posted to algorithm annotation classification disorder embl evolution ppi statistics service by chad_davis on 2008-10-06 12:49:02 as along with 6 people chica niallhaslam Evangelia cabbagesofdoom biehl alanrw
	From the first protein structures to our current knowledge of protein folding: delights and scepticisms [My Copy] Nature Reviews Molecular Cell Biology, Vol. 9, No. 8. (25 June 2008), pp. 650-654. by Alan R. R. Fersht posted to disorder experimental modelling review structure by chad_davis on 2008-08-06 16:18:41 as along with 5 people dfdong aalibes dullhunk paulschlesinger melting
	The role of disorder in interaction networks: a structural analysis [My Copy] Molecular Systems Biology, Vol. 4 (25 March 2008) by Philip M. Kim, Andrea Sboner, Yu Xia, Mark Gerstein posted to disorder networks proj_disocons structure yeast binding by chad_davis on 2008-06-30 10:59:42 as along with 7 people mgomes pablocarb zwang bootsy biomcgary maralena phoenixzxl
	Intrinsic disorder prediction from the analysis of multiple protein fold recognition models. [My Copy] Bioinformatics (Oxford, England) (25 June 2008) by Liam J. J. Mcguffin posted to algorithm classification data_integration disorder ensemble feature_selection proj_disocons structure service by chad_davis on 2008-06-29 10:59:50 as
	Role of intrinsic disorder in transient interactions of hub proteins. [My Copy] Proteins, Vol. 66, No. 4. (1 March 2007), pp. 761-765. by G. P. Singh, M. Ganapathi, D. Dash posted to complexes disorder networks proj_disocons binding by chad_davis on 2008-06-15 13:40:59 as along with 1 person agustinarce
	Understanding eukaryotic linear motifs and their role in cell signaling and regulation. [My Copy] Frontiers in bioscience : a journal and virtual library, Vol. 13 (2008), pp. 6580-6603. by F. Diella, N. Haslam, C. Chica, et al.A. Budd, S. Michael, N. P. Brown, G. Trave, T. J. Gibson posted to disorder embl review binding by chad_davis on 2008-06-01 12:04:07 as along with 3 people chica niallhaslam cabbagesofdoom
	A new protein linear motif benchmark for multiple sequence alignment software. [My Copy] BMC bioinformatics, Vol. 9 (25 April 2008), 213. by Emmanuel Perrodou, Claudia Chica, Olivier Poch, Toby J. Gibson, Julie D. Thompson posted to alignment disorder embl review validation by chad_davis on 2008-05-04 10:10:39 as along with 3 people chica niallhaslam biehl
	POODLE-S: Web application for predicting protein disorder by using physicochemical features and reduced amino acid set of a position specific scoring matrix. [My Copy] Bioinformatics (28 June 2007) by Kana Shimizu, Shuichi Hirose, Tamotsu Noguchi posted to algorithm classification disorder feature_selection proj_disocons service by chad_davis on 2008-04-28 15:27:18 as
	Prediction of disordered regions in proteins based on the meta approach [My Copy] Bioinformatics (20 April 2008), btn195. by Takashi Ishida, Kengo Kinoshita posted to algorithm classification disorder ensemble proj_disocons structure by chad_davis on 2008-04-28 09:47:26 as along with 1 person and 1 group niallhaslam structural_bioinformatics
	Protein disorder prediction at multiple levels of sensitivity and specificity. [My Copy] BMC genomics, Vol. 9 Suppl 1 (2008) by J. Hecker, J. Y. Yang, J. Cheng posted to algorithm classification disorder proj_disocons review structure by chad_davis on 2008-04-20 11:16:25 as
	A careful disorderliness in the proteome: sites for interaction and targets for future therapies. [My Copy] FEBS letters, Vol. 582, No. 8. (9 February 2008), pp. 1271-1275. by Robert B. B. Russell, Toby J. J. Gibson posted to disorder drug embl binding by chad_davis on 2008-02-25 10:34:04 as along with 7 people niallhaslam cat_hutchinson68 guhjy Evangelia robrussell higueruelo kluck
	Identification of transient hub proteins and the possible structural basis for their multiple interactions. [My Copy] Protein science : a publication of the Protein Society, Vol. 17, No. 1. (1 January 2008), pp. 72-78. by Miho Higurashi, Takashi Ishida, Kengo Kinoshita posted to disorder networks statistics structure binding by chad_davis on 2008-01-24 16:02:47 as along with 5 people somak bicko balicea allmensch marti
	Fuzzy complexes: polymorphism and structural disorder in protein-protein interactions. [My Copy] Trends Biochem Sci (26 November 2007) by Peter Tompa, Monika Fuxreiter posted to proj_disocons classification complexes disorder review structure binding by chad_davis on 2007-12-09 20:23:11 as
	The molecular architecture of the nuclear pore complex [My Copy] Nature, Vol. 450, No. 7170. (29 November 2007), pp. 695-701. by Frank Alber, Svetlana Dokudovskaya, Liesbeth M. Veenhoff, et al.Wenzhu Zhang, Julia Kipper, Damien Devos, Adisetyantari Suprapto, Orit K. Schmidt, Rosemary Williams, Brian T. Chait, Andrej Sali, Michael P. Rout posted to complexes disorder embl structure yeast by chad_davis on 2007-12-03 12:50:44 as along with 9 people kgutwin MatthiasReimann hadesnumb neils cjeans zwang mkikkawa faion phoenixzxl
	Structural disorder promotes assembly of protein complexes [My Copy] BMC Structural Biology, Vol. 7, No. 1. (08 October 2007), 65. by Hedi Hegyi, Eva Schad, Peter Tompa posted to proj_disocons complexes disorder structure yeast binding by chad_davis on 2007-10-15 09:07:57 as
	POODLE-L: a two-level SVM prediction system for reliably predicting long disordered regions [My Copy] Bioinformatics, Vol. 23, No. 16. (15 August 2007), pp. 2046-2053. by Shuichi Hirose, Kana Shimizu, Satoru Kanai, Yutaka Kuroda, Tamotsu Noguchi posted to proj_disocons classification disorder feature_selection by chad_davis on 2007-09-13 16:08:33 as
	DisProt: the Database of Disordered Proteins. [My Copy] Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007) by M. Sickmeier, J. A. Hamilton, T. Legall, et al.V. Vacic, M. S. Cortese, A. Tantos, B. Szabo, P. Tompa, J. Chen, V. N. Uversky, Z. Obradovic, A. K. Dunker posted to disorder structure database proj_disocons by chad_davis on 2007-04-23 15:04:21 as along with 4 people carlosjavierna higueruelo choonpeng allmensch
	SMART 5: domains in the context of genomes and networks. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006) by I. Letunic, R. R. Copley, B. Pils, S. Pinkert, J. Schultz, P. Bork posted to classic classification disorder embl proj_disocons service by chad_davis on 2007-04-02 19:40:37 as along with 1 person siebertm
	Consenus Disorder Prediction [My Copy] (2005) by Burnham posted to classification disorder proj_disocons by chad_davis on 2006-12-31 14:55:18 as
	Coupling of folding and binding for unstructured proteins. [My Copy] Curr Opin Struct Biol, Vol. 12, No. 1. (February 2002), pp. 54-60. by H. J. Dyson, P. E. Wright posted to disorder proj_disocons binding by chad_davis on 2006-12-24 09:30:38 as along with 2 people allmensch cactus
	FoldUnfold: web server for the prediction of disordered regions in protein chain [My Copy] Bioinformatics, Vol. 22, No. 23. (1 December 2006), pp. 2948-2949. by Oxana V. Galzitskaya, Sergiy O. Garbuzynskiy, Michail Y. Lobanov posted to classification disorder proj_disocons by chad_davis on 2006-11-18 21:05:37 as along with 1 person bobychan
	Flexible nets [My Copy] FEBS Journal, Vol. 272, No. 20. (October 2005), pp. 5129-5148. by A. K. Dunker, M. S. Cortese, P. Romero, L. M. Iakoucheva, V. N. Uversky posted to disorder binding by chad_davis on 2006-11-11 17:07:07 as along with 5 people mgomes agustinarce cactus niallhaslam Evangelia
	Comparing and Combining Predictors of Mostly Disordered Proteins† [My Copy] Biochemistry, Vol. 44, No. 6. (1 February 2005), pp. 1989-2000. by C. J. Oldfield, Y. Cheng, M. S. Cortese, C. J. Brown, V. N. Uversky, A. K. Dunker posted to classification disorder proj_disocons by chad_davis on 2006-11-07 13:45:30 as along with 2 people carlosjavierna paulschlesinger
	A practical overview of protein disorder prediction methods. [My Copy] Proteins, Vol. 65, No. 1. (19 July 2006), pp. 1-14. by François Ferron, Sonia Longhi, Bruno Canard, David Karlin posted to disorder review structure proj_disocons by chad_davis on 2006-08-21 07:42:41 as
	Accurate Prediction of Protein Disordered Regions by Mining Protein Structure Data [My Copy] Data Mining and Knowledge Discovery, Vol. 11, No. 3. (November 2005), pp. 213-222. by Jianlin Cheng, Michael Sweredoski, Pierre Baldi posted to disorder proj_disocons by chad_davis on 2006-08-14 14:49:54 as
	ProDDO: a database of disordered proteins from the Protein Data Bank (PDB) [My Copy] Bioinformatics, Vol. 17, No. 4. (1 April 2001), pp. 379-380. by Kim L. Sim, Tomoyuki Uchida, Satoru Miyano posted to disorder database proj_disocons by chad_davis on 2006-08-14 14:21:03 as
	Evolutionary rate heterogeneity in proteins with long disordered regions. [My Copy] J Mol Evol, Vol. 55, No. 1. (July 2002), pp. 104-110. by C. J. Brown, S. Takayama, A. M. Campen, et al.P. Vise, T. W. Marshall, C. J. Oldfield, C. J. Williams, A. K. Dunker posted to disorder evolution structure proj_disocons by chad_davis on 2006-08-14 13:52:48 as along with 1 person mgomes
	Methods for improving protein disorder prediction [My Copy] Neural Networks In IJCNN '01, International Joint Conference on Neural Networks Proceedings, Vol. 4 (2001), pp. 2718-2723 vol.4. by S. Vucetic, P. Radivojac, Z. Obradovic, C. J. Brown, A. K. Dunker posted to disorder proj_disocons by chad_davis on 2006-08-14 13:43:20 as along with 2 people carlosjavierna niallhaslam
	Simple sequences are rare in the Protein Data Bank. [My Copy] Proteins, Vol. 48, No. 1. (1 July 2002), pp. 134-140. by M. A. Huntley, G. B. Golding posted to disorder structure database proj_disocons by chad_davis on 2006-07-22 17:40:14 as
	Showing your ID: intrinsic disorder as an ID for recognition, regulation and cell signaling. [My Copy] J Mol Recognit, Vol. 18, No. 5. (t 2005), pp. 343-384. by V. N. Uversky, C. J. Oldfield, A. K. Dunker posted to disorder gene_regulation proj_disocons review by chad_davis on 2006-07-22 17:38:44 as along with 1 person Evangelia
	Conservation of intrinsic disorder in protein domains and families: II. functions of conserved disorder. [My Copy] J Proteome Res, Vol. 5, No. 4. (April 2006), pp. 888-898. by J. W. Chen, P. Romero, V. N. Uversky, A. K. Dunker posted to disorder proj_disocons by chad_davis on 2006-07-22 17:29:05 as
	Conservation of intrinsic disorder in protein domains and families: I. A database of conserved predicted disordered regions. [My Copy] J Proteome Res, Vol. 5, No. 4. (April 2006), pp. 879-887. by J. W. Chen, P. Romero, V. N. Uversky, A. K. Dunker posted to disorder database proj_disocons by chad_davis on 2006-07-22 17:26:36 as
	Analysis of ordered and disordered protein complexes reveals structural features discriminating between stable and unstable monomers. [My Copy] Journal of molecular biology, Vol. 341, No. 5. (27 August 2004), pp. 1327-1341. by K. Gunasekaran, C. J. Tsai, R. Nussinov posted to disorder structure proj_disocons binding by chad_davis on 2006-07-22 11:28:24 as along with 2 people allmensch marti
	RONN: the bio-basis function neural network technique applied to the detection of natively disordered regions in proteins. [My Copy] Bioinformatics, Vol. 21, No. 16. (15 August 2005), pp. 3369-3376. by Z. R. Yang, R. Thomson, P. Mcneil, R. M. Esnouf posted to disorder download proj_disocons by chad_davis on 2006-07-22 11:23:46 as
	Prediction of disordered regions in proteins from position specific score matrices. [My Copy] Proteins, Vol. 53 Suppl 6 (2003), pp. 573-578. by D. T. Jones, J. J. Ward posted to disorder proj_disocons by chad_davis on 2006-07-21 18:36:22 as along with 2 people hryk pablocarb
	The DISOPRED server for the prediction of protein disorder. [My Copy] Bioinformatics, Vol. 20, No. 13. (1 September 2004), pp. 2138-2139. by J. J. Ward, L. J. Mcguffin, K. Bryson, B. F. Buxton, D. T. Jones posted to disorder download proj_disocons service by chad_davis on 2006-07-21 17:01:21 as along with 1 person niallhaslam
	Prediction and Functional Analysis of Native Disorder in Proteins from the Three Kingdoms of Life [My Copy] Journal of Molecular Biology, Vol. 337, No. 3. (26 March 2004), pp. 635-645. by J. J. Ward, J. S. Sodhi, L. J. Mcguffin, B. F. Buxton, D. T. Jones posted to disorder proj_disocons by chad_davis on 2006-07-21 17:00:19 as along with 3 people yxue pablocarb rph
	Sequence patterns associated with disordered regions in proteins. [My Copy] Proteins, Vol. 58, No. 1. (1 January 2005), pp. 144-150. by S. Lise, D. T. Jones posted to disorder embl proj_disocons by chad_davis on 2006-07-21 16:59:01 as along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
	FoldIndex: a simple tool to predict whether a given protein sequence is intrinsically unfolded. [My Copy] Bioinformatics, Vol. 21, No. 16. (15 August 2005), pp. 3435-3438. by J. Prilusky, C. E. Felder, Zeev, et al.E. H. Rydberg, O. Man, J. S. Beckmann, I. Silman, J. L. Sussman posted to disorder proj_disocons service by chad_davis on 2006-07-21 15:18:48 as along with 2 people and 1 group pdelosri nm EPFL_SB_ITP_LBS
	Intrinsic disorder in cell-signaling and cancer-associated proteins. [My Copy] J Mol Biol, Vol. 323, No. 3. (25 October 2002), pp. 573-584. by L. M. Iakoucheva, C. J. Brown, J. D. Lawson, Z. Obradovic, A. K. Dunker posted to disorder proj_disocons by chad_davis on 2006-07-21 13:25:55 as along with 1 person allmensch
	DisProt: a database of protein disorder. [My Copy] Bioinformatics, Vol. 21, No. 1. (1 January 2005), pp. 137-140. by S. Vucetic, Z. Obradovic, V. Vacic, et al.P. Radivojac, K. Peng, L. M. Iakoucheva, M. S. Cortese, J. D. Lawson, C. J. Brown, J. G. Sikes, C. D. Newton, A. K. Dunker posted to disorder database proj_disocons by chad_davis on 2006-07-21 13:23:17 as along with 1 person niallhaslam
	Intrinsically unstructured proteins and their functions. [My Copy] Nature reviews. Molecular cell biology, Vol. 6, No. 3. (01 March 2005), pp. 197-208. by Jane H. Dyson, Peter E. Wright posted to disorder proj_disocons by chad_davis on 2006-07-21 13:23:09 as along with 4 people and 1 group chica yxue penka cactus Nie
	Intrinsic disorder in transcription factors. [My Copy] Biochemistry, Vol. 45, No. 22. (6 June 2006), pp. 6873-6888. by J. Liu, N. B. Perumal, C. J. Oldfield, E. W. Su, V. N. Uversky, A. K. Dunker posted to disorder gene_regulation proj_disocons by chad_davis on 2006-07-21 13:22:46 as
	Exploiting heterogeneous sequence properties improves prediction of protein disorder. [My Copy] Proteins, Vol. 61 Suppl 7 (2005), pp. 176-182. by Z. Obradovic, K. Peng, S. Vucetic, P. Radivojac, A. K. Dunker posted to classification disorder proj_disocons by chad_davis on 2006-07-21 13:18:24 as
	IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content. [My Copy] Bioinformatics, Vol. 21, No. 16. (15 August 2005), pp. 3433-3434. by Z. Dosztanyi, V. Csizmok, P. Tompa, I. Simon posted to disorder download proj_disocons service by chad_davis on 2006-07-21 13:09:05 as along with 1 person kluck
	Structural disorder throws new light on moonlighting. [My Copy] Trends Biochem Sci, Vol. 30, No. 9. (September 2005), pp. 484-489. by P. Tompa, C. Szasz, L. Buday posted to disorder proj_disocons by chad_davis on 2006-07-21 13:06:06 as along with 1 person benlin
	Flavors of protein disorder [My Copy] Proteins: Structure, Function, and Genetics, Vol. 52, No. 4. (1 September 2003), pp. 573-584. by S. Vucetic, C. J. Brown, A. K. Dunker, Z. Obradovic posted to disorder proj_disocons by chad_davis on 2006-07-21 12:59:47 as along with 5 people yxue carlosjavierna niallhaslam Evangelia allmensch
	Evaluation of disorder predictions in CASP5. [My Copy] Proteins, Vol. 53 Suppl 6 (2003), pp. 561-565. by E. Melamud, J. Moult posted to disorder proj_disocons by chad_davis on 2006-07-21 12:58:56 as

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structure	236
binding	152
algorithm	136
review	112
embl	98
proj_disocons	82
database	81
complexes	80
classic	79
classification	79
proj_assembly	66
evolution	64
statistics	64
networks	58
disorder	53
modelling	49
service	46
feature_selection	44
ppi	42
proj_credo	40
data_integration	36
download	36
gene_regulation	30
yeast	29
annotation	28
proj_interprets	27
toolkit	25
validation	24
clustering	22
experimental	20
alignment	19
microarray	18
disease	16
chemistry	15
non-redundant	12
proj_stabperf	11
ensemble	10
data_mining	9
mpi	9
docking	8
drug	7
proj_cct	6
proj_bachelor	4
distributed	3

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