chad_davis's embl [98 articles] Export

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	STRING 8--a global view on proteins and their functional interactions in 630 organisms [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_1. (1 January 2009), pp. D412-416. by Lars J. Jensen, Michael Kuhn, Manuel Stark, et al.Samuel Chaffron, Chris Creevey, Jean Muller, Tobias Doerks, Philippe Julien, Alexander Roth, Milan Simonovic, Peer Bork, Christian von Mering posted to annotation data_integration data_mining database embl networks ppi by chad_davis on 2009-02-01 19:31:10 as along with 15 people and 1 group carlk mitko ilyashl hagechouchin443 lptolik kshameer allysonlister larsjuhljensen druvus guhjy renatomilani grahamc behindtherabbit kgutwin biehl Bioinformatics
	Association rate constants of ras-effector interactions are evolutionarily conserved. [My Copy] PLoS computational biology, Vol. 4, No. 12. (December 2008) by C. Kiel, D. Aydin, L. Serrano posted to binding complexes embl evolution ppi structure by chad_davis on 2008-12-26 21:31:29 as along with 2 people barry ras
	The archaeal exosome core is a hexameric ring structure with three catalytic subunits [My Copy] Nature Structural & Molecular Biology, Vol. 12, No. 7. (12 June 2005), pp. 575-581. by Esben Lorentzen, Pamela Walter, Sebastien Fribourg, Elena Evguenieva-Hackenberg, Gabriele Klug, Elena Conti posted to classic complexes embl evolution experimental proj_assembly structure by chad_davis on 2008-12-22 13:11:34 as
	3did Update: domain-domain and peptide-mediated interactions of known 3D structure. [My Copy] Nucleic acids research (25 October 2008) by Amelie Stein, Alejandro Panjkovich, Patrick Aloy posted to binding classic database embl ppi proj_assembly proj_interprets by chad_davis on 2008-10-29 16:29:48 as
	The Protein Feature Ontology: a tool for the unification of protein feature annotations. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 23. (1 December 2008), pp. 2767-2772. by G. A. Reeves, K. Eilbeck, M. Magrane, et al.C. O'Donovan, L. Montecchi-Palazzi, M. A. Harris, S. Orchard, R. C. Jimenez, A. Prlic, T. J. Hubbard, H. Hermjakob, J. M. Thornton posted to annotation data_integration embl by chad_davis on 2008-10-27 12:02:11 as along with 12 people and 2 groups timhubbard TRHvidsten idoerg nlapalu fgibson zimbo1 barriot guhjy grahamc Zephyrus i000 dullhunk Roswell Cancer Crosstalk MuraLab
	Targeting and tinkering with interaction networks [My Copy] Nature Chemical Biology, Vol. 4, No. 11. (20 October 2008), pp. 666-673. by Robert B. B. Russell, Patrick Aloy posted to embl networks ppi proj_assembly review by chad_davis on 2008-10-27 11:58:57 as along with 3 people and 1 group lees jperkins zwang Orengo Group Journal Picks
	The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases. [My Copy] BMC bioinformatics, Vol. 8, No. 1. (2007) by Richard G. Côté, Philip Jones, Lennart Martens, et al.Samuel Kerrien, Florian Reisinger, Quan Lin, Rasko Leinonen, Rolf Apweiler, Henning Hermjakob posted to data_integration database embl service by chad_davis on 2008-10-20 12:35:41 as along with 12 people saunders robert druvus whoare guhjy dullhunk niallhaslam antonkratz barriot dansullivanblk tny kynn
	A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences. [My Copy] BMC bioinformatics, Vol. 9 (06 May 2008), 229. by Claudia Chica, Alberto Labarga, Cathryn M. Gould, Rodrigo Lopez, Toby J. Gibson posted to algorithm annotation classification disorder embl evolution ppi statistics service by chad_davis on 2008-10-06 12:49:02 as along with 6 people chica niallhaslam Evangelia cabbagesofdoom biehl alanrw
	Analyzing Protein Interaction Networks Using Structural Information [My Copy] Annual Review of Biochemistry, Vol. 77, No. 1. (2008) by Christina Kiel, Pedro Beltrao, Luis Serrano posted to data_integration embl networks ppi proj_assembly proj_interprets review structure by chad_davis on 2008-09-17 16:51:18 as along with 11 people and 1 group msuarezdiez flbarroso kshameer Borelli bicko neils Evangelia grahamc paolomarcatili phoenixzxl zwang structural_bioinformatics
	STRING 7--recent developments in the integration and prediction of protein interactions. [My Copy] Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007) by C. von Mering, L. J. Jensen, M. Kuhn, et al.S. Chaffron, T. Doerks, B. Krüger, B. Snel, P. Bork posted to classic data_integration database embl ppi proj_assembly service by chad_davis on 2008-09-16 09:59:56 as along with 16 people anf dragonrez druvus Cortel wenhui guhjy kuhn balajis fisherp raiyar massivemayhem larsjuhljensen higueruelo renatomilani carlk bicko
	Understanding and Predicting Protein Assemblies With 3D Structures. [My Copy] Comparative and functional genomics, Vol. 4, No. 4. (2003), pp. 410-415. by P. Aloy, R. B. Russell posted to algorithm classic complexes data_integration embl modelling proj_assembly structure binding by chad_davis on 2008-08-03 18:17:16 as
	MSDmotif: exploring protein sites and motifs [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 312. by Adel Golovin, Kim Henrick posted to algorithm complexes database data_integration drug embl structure binding service by chad_davis on 2008-07-17 16:18:19 as along with 6 people pansapiens HawkinsJohnC tjimenez reyez massivemayhem Evangelia
	Peptide-mediated interactions in biological systems: new discoveries and applications. [My Copy] Current opinion in biotechnology (1 July 2008) by Evangelia Petsalaki, Robert B. B. Russell posted to embl review structure binding by chad_davis on 2008-07-14 12:54:41 as along with 2 people zdai jteyra
	Inference of macromolecular assemblies from crystalline state. [My Copy] Journal of molecular biology, Vol. 372, No. 3. (21 September 2007), pp. 774-797. by E. Krissinel, K. Henrick posted to algorithm annotation complexes database embl proj_assembly structure validation binding service by chad_davis on 2008-07-13 16:28:44 as along with 3 people marti rico bicko
	The social network of a cell: Recent advances in interactome mapping. [My Copy] Biotechnology annual review, Vol. 14 (2008), pp. 1-28. by S. Charbonnier, O. Gallego, A. C. Gavin posted to data_integration embl networks proj_assembly review by chad_davis on 2008-07-09 19:38:51 as
	Evolvability and hierarchy in rewired bacterial gene networks [My Copy] Nature, Vol. 452, No. 7189. (17 April 2008), pp. 840-845. by Mark Isalan, Caroline Lemerle, Konstantinos Michalodimitrakis, et al.Carsten Horn, Pedro Beltrao, Emanuele Raineri, Mireia G. Canut, Luis Serrano posted to embl evolution gene_regulation networks by chad_davis on 2008-07-07 12:11:29 as along with 26 people and 4 groups Asclepius yyfwuhan biomcgary megraw chica jimineep balabu kaarsinogen aalibes tmmurali dullhunk neils cmzmasek AbnerCYH josedavid biehl caseybrown Garamonfok austin hryk dbikard cactus margaritis michaelbarton aheilbut zwang GEB Centre de Recherches Interdisciplinaires SynBioSys BergmanLab
	Simple fold composition and modular architecture of the nuclear pore complex. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 7. (14 February 2006), pp. 2172-2177. by D. Devos, S. Dokudovskaya, R. Williams, et al.F. Alber, N. Eswar, B. T. Chait, M. P. Rout, A. Sali posted to complexes embl evolution modelling structure by chad_davis on 2008-06-27 14:31:05 as
	Systematic discovery of in vivo phosphorylation networks. [My Copy] Cell, Vol. 129, No. 7. (29 June 2007), pp. 1415-1426. by R. Linding, L. J. Jensen, G. J. Ostheimer, et al.M. A. van Vugt, C. Jørgensen, I. M. Miron, F. Diella, K. Colwill, L. Taylor, K. Elder, P. Metalnikov, V. Nguyen, A. Pasculescu, J. Jin, J. G. Park, L. D. Samson, J. R. Woodgett, R. B. Russell, P. Bork, M. B. Yaffe, T. Pawson posted to algorithm data_integration embl networks binding by chad_davis on 2008-06-20 11:13:19 as along with 21 people and 2 groups rsaito jaimie nzm nedwards MatthiasReimann ptrobajo guhjy skhadar julius zwang cdppublications lp2 psique robrussell snowcrash larsjuhljensen Evangelia renatomilani carlk daed bouncingbudha SysbioMPI-TCells Durbin group
	Understanding eukaryotic linear motifs and their role in cell signaling and regulation. [My Copy] Frontiers in bioscience : a journal and virtual library, Vol. 13 (2008), pp. 6580-6603. by F. Diella, N. Haslam, C. Chica, et al.A. Budd, S. Michael, N. P. Brown, G. Trave, T. J. Gibson posted to disorder embl review binding by chad_davis on 2008-06-01 12:04:07 as along with 3 people chica niallhaslam cabbagesofdoom
	Incorporating high-throughput proteomics experiments into structural biology pipelines: Identification of the low-hanging fruits. [My Copy] Proteomics, Vol. 8, No. 10. (19 May 2008), pp. 1959-1964. by Roland A. A. Pache, Patrick Aloy posted to complexes embl proj_assembly structure yeast by chad_davis on 2008-05-25 01:26:08 as
	An analysis of conformational changes on proteinprotein association: implications for predictive docking [My Copy] Protein Eng., Vol. 12, No. 4. (1 April 1999), pp. 271-283. by M. J. Betts, M. J. Sternberg posted to complexes docking embl structure binding by chad_davis on 2008-05-04 15:32:44 as along with 4 people boris_aguilar mijogiffin bicko ffranca
	A new protein linear motif benchmark for multiple sequence alignment software. [My Copy] BMC bioinformatics, Vol. 9 (25 April 2008), 213. by Emmanuel Perrodou, Claudia Chica, Olivier Poch, Toby J. Gibson, Julie D. Thompson posted to alignment disorder embl review validation by chad_davis on 2008-05-04 10:10:39 as along with 3 people chica niallhaslam biehl
	Subunit Architecture of Intact Protein Complexes from Mass Spectrometry and Homology Modeling [My Copy] Acc. Chem. Res. (4 March 2008) by Thomas Taverner, Helena Hernandez, Michal Sharon, et al.Brandon T. Ruotolo, Dijana M. Vinkovic, Damien Devos, Robert B. Russell, Carol V. Robinson posted to algorithm complexes embl experimental modelling networks proj_assembly structure yeast binding by chad_davis on 2008-03-10 08:53:48 as along with 1 person faion
	Interaction networks for systems biology. [My Copy] FEBS Lett (15 February 2008) by Samuel Bader, Sebastian Kühner, Anne posted to embl networks ppi review by chad_davis on 2008-02-25 10:42:22 as along with 4 people yyby ruvido zwang adacier
	A careful disorderliness in the proteome: sites for interaction and targets for future therapies. [My Copy] FEBS letters, Vol. 582, No. 8. (9 February 2008), pp. 1271-1275. by Robert B. B. Russell, Toby J. J. Gibson posted to disorder drug embl binding by chad_davis on 2008-02-25 10:34:04 as along with 7 people niallhaslam cat_hutchinson68 guhjy Evangelia robrussell higueruelo kluck
	Components of coated vesicles and nuclear pore complexes share a common molecular architecture. [My Copy] PLoS biology, Vol. 2, No. 12. (1 December 2004), e380. by Damien Devos, Svetlana Dokudovskaya, Frank Alber, et al.Rosemary Williams, Brian T. Chait, Andrej Sali, Michael P. Rout posted to complexes embl evolution structure by chad_davis on 2008-02-21 12:32:21 as
	Determining the architectures of macromolecular assemblies [My Copy] Nature, Vol. 450, No. 7170. (29 November 2007), pp. 683-694. by Frank Alber, Svetlana Dokudovskaya, Liesbeth M. Veenhoff, et al.Wenzhu Zhang, Julia Kipper, Damien Devos, Adisetyantari Suprapto, Orit K. Schmidt, Rosemary Williams, Brian T. Chait, Michael P. Rout, Andrej Sali posted to algorithm complexes embl modelling structure by chad_davis on 2007-12-03 12:54:01 as along with 9 people mijam bicko neils cjeans zwang CameronNeylon faion phoenixzxl higueruelo
	The molecular architecture of the nuclear pore complex [My Copy] Nature, Vol. 450, No. 7170. (29 November 2007), pp. 695-701. by Frank Alber, Svetlana Dokudovskaya, Liesbeth M. Veenhoff, et al.Wenzhu Zhang, Julia Kipper, Damien Devos, Adisetyantari Suprapto, Orit K. Schmidt, Rosemary Williams, Brian T. Chait, Andrej Sali, Michael P. Rout posted to complexes disorder embl structure yeast by chad_davis on 2007-12-03 12:50:44 as along with 9 people kgutwin MatthiasReimann hadesnumb neils cjeans zwang mkikkawa faion phoenixzxl
	Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations. [My Copy] J Mol Biol, Vol. 320, No. 2. (5 July 2002), pp. 369-387. by R. Guerois, J. E. Nielsen, L. Serrano posted to algorithm classic complexes embl structure binding service by chad_davis on 2007-09-28 13:07:21 as along with 4 people apaydin aalibes hmk carlescorbi
	Coverage and error models of protein-protein interaction data by directed graph analysis [My Copy] Genome Biology, Vol. 8 (10 September 2007), R186. by Tony Chiang, Denise Scholtens, Deepayan Sarkar, Robert Gentleman, Wolfgang Huber posted to clustering embl networks review statistics validation yeast by chad_davis on 2007-09-27 16:28:59 as along with 5 people Yanno jfr grahamc winterschlaefer Pao-Yang
	Protein-protein interfaces: analysis of amino acid conservation in homodimers. [My Copy] Proteins, Vol. 42, No. 1. (1 January 2001), pp. 108-124. by W. S. Valdar, J. M. Thornton posted to embl evolution binding by chad_davis on 2007-09-27 11:10:18 as along with 2 people chica kintoki
	Database of homology-derived protein structures and the structural meaning of sequence alignment. [My Copy] Proteins, Vol. 9, No. 1. (1991), pp. 56-68. by C. Sander, R. Schneider posted to classic embl modelling structure by chad_davis on 2007-09-05 19:54:00 as along with 2 people ca3295 Lombardo_7
	Mass spectrometry of macromolecular assemblies: preservation and dissociation. [My Copy] Curr Opin Struct Biol, Vol. 16, No. 2. (April 2006), pp. 245-251. by J. L. Benesch, C. V. Robinson posted to complexes embl experimental by chad_davis on 2007-09-04 12:13:31 as
	The hard cell: From proteomics to a whole cell model [My Copy] FEBS Letters In Vienna Special Issue: Molecular Machines, Vol. 581, No. 15. (19 June 2007), pp. 2870-2876. by Matthew J. Betts, Robert B. Russell posted to complexes embl modelling review by chad_davis on 2007-09-04 12:02:13 as along with 2 people ruvido higueruelo
	Multiple protein sequence alignment from tertiary structure comparison: assignment of global and residue confidence levels. [My Copy] Proteins, Vol. 14, No. 2. (October 1992), pp. 309-323. by R. B. Russell, G. J. Barton posted to algorithm embl structure by chad_davis on 2007-08-22 12:34:13 as along with 3 people mijam analogAI jefferlyemerson
	CATH--a hierarchic classification of protein domain structures. [My Copy] Structure (London, England : 1993), Vol. 5, No. 8. (15 August 1997), pp. 1093-1108. by C. A. Orengo, A. D. Michie, S. Jones, D. T. Jones, M. B. Swindells, J. M. Thornton posted to algorithm annotation classic classification database embl evolution structure service by chad_davis on 2007-08-07 12:41:10 as along with 14 people and 4 groups ucbcjbm flbarroso kumar_physics semin sebk tjimenez dimka jwm Einat caporaso massivemayhem sim82 jteyra gulkur structural_bioinformatics Radiation_Damage Stressosome biomedical-nlp
	Analysis of protein-protein interaction sites using surface patches. [My Copy] Journal of molecular biology, Vol. 272, No. 1. (12 September 1997), pp. 121-132. by S. Jones, J. M. Thornton posted to chemistry classification embl structure binding by chad_davis on 2007-07-25 11:51:17 as along with 3 people mgomes joseolucha cjeans
	A more complete, complexed and structured interactome. [My Copy] Curr Opin Struct Biol (14 June 2007) by Damien Devos, Robert B. Russell posted to embl networks review structure binding by chad_davis on 2007-07-24 17:42:04 as along with 4 people balicea skhadar choonpeng ruvido
	Supersites within superfolds. Binding site similarity in the absence of homology. [My Copy] Journal of molecular biology, Vol. 282, No. 4. (2 October 1998), pp. 903-918. by Robert B. Russell, Peter D. Sasieni, Michael J. Sternberg posted to embl evolution structure by chad_davis on 2007-07-16 11:42:54 as along with 2 people martainn nickolay
	The CATH protein family database: a resource for structural and functional annotation of genomes. [My Copy] Proteomics, Vol. 2, No. 1. (January 2002), pp. 11-21. by C. A. Orengo, J. E. Bray, D. W. Buchan, et al.A. Harrison, D. Lee, F. M. Pearl, I. Sillitoe, A. E. Todd, J. M. Thornton posted to annotation classification embl evolution review structure database by chad_davis on 2007-05-18 14:35:23 as along with 2 people and 1 group maria_hauser sillitoe Orengo Group Journal Picks
	E-MSD: an integrated data resource for bioinformatics. [My Copy] Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005) by S. Velankar, P. Mcneil, Mittard V. Runte, et al.A. Suarez, D. Barrell, R. Apweiler, K. Henrick posted to annotation database data_integration embl by chad_davis on 2007-05-11 10:15:47 as along with 1 person massivemayhem
	Structural features can be unconserved in proteins with similar folds. An analysis of side-chain to side-chain contacts secondary structure and accessibility. [My Copy] J Mol Biol, Vol. 244, No. 3. (2 December 1994), pp. 332-350. by R. B. Russell, G. J. Barton posted to embl evolution structure by chad_davis on 2007-04-30 15:46:12 as along with 2 people and 2 groups ana barry structural_bioinformatics Bioinformatics
	EMBOSS: the European Molecular Biology Open Software Suite. [My Copy] Trends Genet, Vol. 16, No. 6. (June 2000), pp. 276-277. by P. Rice, I. Longden, A. Bleasby posted to classic download embl toolkit by chad_davis on 2007-04-19 14:46:41 as along with 6 people niallhaslam fhsantanna dullhunk mtagaya dgront dna
	Multiple sequence alignment with the Clustal series of programs [My Copy] Nucl. Acids Res., Vol. 31, No. 13. (1 July 2003), pp. 3497-3500. by R. Chenna, H. Sugawara, T. Koike, et al.R. Lopez, T. J. Gibson, D. G. Higgins, J. D. Thompson posted to algorithm classic clustering download embl evolution service by chad_davis on 2007-04-18 09:17:52 as along with 8 people and 1 group vprieto BioNica Lombardo_7 miguel beatrizfernandez raylim xingxu marck Microbial-Ecology
	Twilight zone of protein sequence alignments. [My Copy] Protein Eng, Vol. 12, No. 2. (February 1999), pp. 85-94. by B. Rost posted to classic embl evolution statistics by chad_davis on 2007-04-16 16:36:07 as along with 6 people newton1234 cambray viktor21614 ffranca sgoetz bicko
	PQS: a protein quaternary structure file server. [My Copy] Trends Biochem Sci, Vol. 23, No. 9. (September 1998), pp. 358-361. by K. Henrick, J. M. Thornton posted to embl structure database binding by chad_davis on 2007-04-10 11:19:11 as along with 3 people medic0747 kgutwin bicko
	SMART 5: domains in the context of genomes and networks. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006) by I. Letunic, R. R. Copley, B. Pils, S. Pinkert, J. Schultz, P. Bork posted to classic classification disorder embl proj_disocons service by chad_davis on 2007-04-02 19:40:37 as along with 1 person siebertm
	Protein families and their evolution-a structural perspective. [My Copy] Annu Rev Biochem, Vol. 74 (2005), pp. 867-900. by C. A. Orengo, J. M. Thornton posted to embl evolution review structure by chad_davis on 2007-04-02 16:36:36 as along with 19 people and 6 groups dfdong ucbcjbm flbarroso kumar_physics yuslinaz ssgong ana barry tjimenez jwm Einat Schmidtc marcius sriram_s ezotenko redelings medic0747 nigham sim82 structural_bioinformatics Radiation_Damage Stressosome Bioinformatics BioinfoCIPF SGU-CIPF
	Potential energy functions for threading. [My Copy] Curr Opin Struct Biol, Vol. 6, No. 2. (April 1996), pp. 210-216. by D. T. Jones, J. M. Thornton posted to embl modelling review statistics structure algorithm by chad_davis on 2007-04-02 16:31:23 as
	Protein-protein interactions: a review of protein dimer structures. [My Copy] Prog Biophys Mol Biol, Vol. 63, No. 1. (1995), pp. 31-65. by S. Jones, J. M. Thornton posted to embl review structure binding by chad_davis on 2007-04-02 16:28:39 as along with 4 people and 5 groups viktor21614 bicko barry joergkurtwegner structural_bioinformatics Bioinformatics Molecular-Modelling Drug-Design Cheminformatics

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structure	236
binding	152
algorithm	136
review	112
embl	98
proj_disocons	82
database	81
complexes	80
classic	79
classification	79
proj_assembly	66
evolution	64
statistics	64
networks	58
disorder	53
modelling	49
service	46
feature_selection	44
ppi	42
proj_credo	40
data_integration	36
download	36
gene_regulation	30
yeast	29
annotation	28
proj_interprets	27
toolkit	25
validation	24
clustering	22
experimental	20
alignment	19
microarray	18
disease	16
chemistry	15
non-redundant	12
proj_stabperf	11
ensemble	10
data_mining	9
mpi	9
docking	8
drug	7
proj_cct	6
proj_bachelor	4
distributed	3

chad_davis's embl [98 articles] Export

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