chad_davis's networks [58 articles] Export

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	STRING 8--a global view on proteins and their functional interactions in 630 organisms [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_1. (1 January 2009), pp. D412-416. by Lars J. Jensen, Michael Kuhn, Manuel Stark, et al.Samuel Chaffron, Chris Creevey, Jean Muller, Tobias Doerks, Philippe Julien, Alexander Roth, Milan Simonovic, Peer Bork, Christian von Mering posted to annotation data_integration data_mining database embl networks ppi by chad_davis on 2009-02-01 19:31:10 as along with 15 people and 1 group carlk mitko ilyashl hagechouchin443 lptolik kshameer allysonlister larsjuhljensen druvus guhjy renatomilani grahamc behindtherabbit kgutwin biehl Bioinformatics
	Age-Dependent Evolution of the Yeast Protein Interaction Network Suggests a Limited Role of Gene Duplication and Divergence [My Copy] PLoS Comput Biol, Vol. 4, No. 11. (28 November 2008), e1000232. by Wan K. Kim, Edward M. Marcotte posted to complexes evolution networks ppi proj_assembly proj_interprets statistics validation by chad_davis on 2008-12-19 09:35:41 as along with 7 people wangbo dakelley biomcgary cabbagesofdoom grahamc bpcusack tmmurali
	Integrating Expression Data with Domain Interaction Networks [My Copy] Bioinformatics (19 August 2008), btn437. by Dorothea Emig, Melissa S. Cline, Thomas Lengauer, Mario Albrecht posted to data_integration download evolution microarray networks ppi proj_assembly proj_stabperf by chad_davis on 2008-12-18 20:35:43 as along with 7 people jfr guhjy zwang barriot druvus zimbo1 grahamc
	Organization of Physical Interactomes as Uncovered by Network Schemas [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (24 October 2008), e1000203. by Eric Banks, Elena Nabieva, Bernard Chazelle, Mona Singh posted to algorithm data_mining networks ppi proj_assembly by chad_davis on 2008-10-27 12:38:59 as along with 4 people sivaramanb roys marck grahamc
	Targeting and tinkering with interaction networks [My Copy] Nature Chemical Biology, Vol. 4, No. 11. (20 October 2008), pp. 666-673. by Robert B. B. Russell, Patrick Aloy posted to embl networks ppi proj_assembly review by chad_davis on 2008-10-27 11:58:57 as along with 3 people and 1 group lees jperkins zwang Orengo Group Journal Picks
	Improved network-based identification of protein orthologs. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008) by N. Yosef, R. Sharan, W. S. Noble posted to algorithm annotation clustering evolution networks proj_assembly by chad_davis on 2008-10-15 09:16:29 as along with 1 person grahamc
	Fitting a Geometric Graph to a Protein-Protein Interaction Network. [My Copy] Bioinformatics (14 March 2008) by Desmond J. J. Higham, Marija Rasajski, Natasa Przulj posted to algorithm networks ppi proj_assembly by chad_davis on 2008-10-14 10:36:47 as along with 10 people and 1 group tmmurali AbnerCYH grahamc bootsy maralena scienbox lidaiqiang1981 paolomarcatili guhjy mariap3636 untranet
	Modifying the DPClus algorithm for identifying protein complexes based on new topological structures [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Min Li, Jianer Chen, Jianxin Wang, Bin Hu, Gang Chen posted to algorithm clustering complexes download networks proj_assembly by chad_davis on 2008-10-09 15:22:18 as along with 2 people diamantis neils
	An efficient algorithm for large-scale detection of protein families [My Copy] Nucl. Acids Res., Vol. 30, No. 7. (1 April 2002), pp. 1575-1584. by A. J. Enright, S. Van Dongen, C. A. Ouzounis posted to algorithm clustering download networks proj_assembly toolkit by chad_davis on 2008-10-08 12:48:58 as along with 22 people and 2 groups jperkins calderonv nedwards dakelley druvus treangen carlk cgaugain johanviklund camster operon knaseanka indigoviolet skhadar nirfriedman dgront entropy gcalda GustavoLacerda hpaces RebeccaHamer Borelli dbk-lab EisenLab
	Interactome data and databases: different types of protein interaction. [My Copy] Comparative and functional genomics, Vol. 5, No. 2. (2004), pp. 173-178. by De Las, A. de Luis posted to networks ppi proj_assembly proj_interprets review by chad_davis on 2008-10-08 10:56:48 as
	APID: Agile Protein Interaction DataAnalyzer. [My Copy] Nucleic acids research, Vol. 34, No. Web Server issue. (1 July 2006) by C. Prieto, De Las posted to data_integration database download networks ppi proj_assembly proj_interprets service by chad_davis on 2008-10-08 10:53:05 as along with 1 person satre
	GraphCrunch: a tool for large network analyses [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Tijana Milenkovic, Jason Lai, Natasa Przulj posted to algorithm clustering distributed download networks proj_assembly service by chad_davis on 2008-10-06 16:41:38 as along with 7 people grahamc laughcry barriot guhjy maralena dullhunk ptrobajo
	Analyzing Protein Interaction Networks Using Structural Information [My Copy] Annual Review of Biochemistry, Vol. 77, No. 1. (2008) by Christina Kiel, Pedro Beltrao, Luis Serrano posted to data_integration embl networks ppi proj_assembly proj_interprets review structure by chad_davis on 2008-09-17 16:51:18 as along with 11 people and 1 group msuarezdiez flbarroso kshameer Borelli bicko neils Evangelia grahamc paolomarcatili phoenixzxl zwang structural_bioinformatics
	The social network of a cell: Recent advances in interactome mapping. [My Copy] Biotechnology annual review, Vol. 14 (2008), pp. 1-28. by S. Charbonnier, O. Gallego, A. C. Gavin posted to data_integration embl networks proj_assembly review by chad_davis on 2008-07-09 19:38:51 as
	Evolvability and hierarchy in rewired bacterial gene networks. [My Copy] Nature, Vol. 452, No. 7189. (17 April 2008), pp. 840-845. by Mark Isalan, Caroline Lemerle, Konstantinos Michalodimitrakis, et al.Carsten Horn, Pedro Beltrao, Emanuele Raineri, Mireia G. Canut, Luis Serrano posted to embl evolution gene_regulation networks by chad_davis on 2008-07-07 12:11:29 as along with 25 people and 4 groups yyfwuhan biomcgary megraw chica jimineep balabu kaarsinogen aalibes tmmurali dullhunk neils cmzmasek AbnerCYH josedavid biehl caseybrown Garamonfok austin hryk dbikard cactus margaritis michaelbarton aheilbut zwang GEB Centre de Recherches Interdisciplinaires SynBioSys BergmanLab
	The role of disorder in interaction networks: a structural analysis [My Copy] Molecular Systems Biology, Vol. 4 (25 March 2008) by Philip M. Kim, Andrea Sboner, Yu Xia, Mark Gerstein posted to disorder networks proj_disocons structure yeast binding by chad_davis on 2008-06-30 10:59:42 as along with 7 people mgomes pablocarb zwang bootsy biomcgary maralena phoenixzxl
	Using indirect protein-protein interactions for protein complex prediction. [My Copy] Journal of bioinformatics and computational biology, Vol. 6, No. 3. (June 2008), pp. 435-466. by H. N. Chua, K. Ning, W. K. Sung, H. W. Leong, L. Wong posted to algorithm clustering complexes networks proj_assembly binding by chad_davis on 2008-06-29 11:14:25 as
	Systematic discovery of in vivo phosphorylation networks. [My Copy] Cell, Vol. 129, No. 7. (29 June 2007), pp. 1415-1426. by R. Linding, L. J. Jensen, G. J. Ostheimer, et al.M. A. van Vugt, C. Jørgensen, I. M. Miron, F. Diella, K. Colwill, L. Taylor, K. Elder, P. Metalnikov, V. Nguyen, A. Pasculescu, J. Jin, J. G. Park, L. D. Samson, J. R. Woodgett, R. B. Russell, P. Bork, M. B. Yaffe, T. Pawson posted to algorithm data_integration embl networks binding by chad_davis on 2008-06-20 11:13:19 as along with 21 people and 2 groups rsaito jaimie nzm nedwards MatthiasReimann ptrobajo guhjy skhadar julius zwang cdppublications lp2 psique robrussell snowcrash larsjuhljensen Evangelia renatomilani carlk daed bouncingbudha SysbioMPI-TCells Durbin group
	Role of intrinsic disorder in transient interactions of hub proteins. [My Copy] Proteins, Vol. 66, No. 4. (1 March 2007), pp. 761-765. by G. P. Singh, M. Ganapathi, D. Dash posted to complexes disorder networks proj_disocons binding by chad_davis on 2008-06-15 13:40:59 as along with 1 person agustinarce
	The elusive yeast interactome. [My Copy] Genome Biol, Vol. 7, No. 6. (2006) by J. Goll, P. Uetz posted to complexes experimental networks proj_assembly review yeast binding by chad_davis on 2008-05-05 09:11:33 as along with 3 people maryee eukfn Evangelia
	From pull-down data to protein interaction networks and com-plexes with biological relevance. [My Copy] Bioinformatics (26 February 2008) by Bing Zhang, Byung, Tatiana Karpinets, Nagiza F. F. Samatova posted to algorithm complexes networks proj_assembly binding by chad_davis on 2008-04-22 12:02:54 as along with 4 people guhjy grahamc kluck carlk
	Subunit architecture of multimeric complexes isolated directly from cells [My Copy] EMBO Reports, Vol. aop, No. current. (18 August 2006) by Helena Hernandez, Andrzej Dziembowski, Thomas Taverner, Bertrand Seraphin, Carol V. Robinson posted to classic complexes experimental networks proj_assembly structure yeast binding by chad_davis on 2008-04-21 14:01:55 as along with 1 person faion
	Two Algorithms for Generating Weighted Spanning Trees in Order [My Copy] SIAM Journal on Computing, Vol. 6, No. 1. (1977), pp. 139-150. by Harold N. Gabow posted to algorithm classic networks proj_assembly by chad_davis on 2008-03-22 13:26:47 as
	Subunit Architecture of Intact Protein Complexes from Mass Spectrometry and Homology Modeling [My Copy] Acc. Chem. Res. (4 March 2008) by Thomas Taverner, Helena Hernandez, Michal Sharon, et al.Brandon T. Ruotolo, Dijana M. Vinkovic, Damien Devos, Robert B. Russell, Carol V. Robinson posted to algorithm complexes embl experimental modelling networks proj_assembly structure yeast binding by chad_davis on 2008-03-10 08:53:48 as along with 1 person faion
	Interaction networks for systems biology. [My Copy] FEBS Lett (15 February 2008) by Samuel Bader, Sebastian Kühner, Anne posted to embl networks ppi review by chad_davis on 2008-02-25 10:42:22 as along with 4 people yyby ruvido zwang adacier
	Universally sloppy parameter sensitivities in systems biology models. [My Copy] PLoS computational biology, Vol. 3, No. 10. (1 October 2007), pp. 1871-1878. by Ryan N. Gutenkunst, Joshua J. Waterfall, Fergal P. Casey, Kevin S. Brown, Christopher R. Myers, James P. Sethna posted to feature_selection networks by chad_davis on 2008-02-25 10:01:33 as along with 6 people PaperCollector schwartzjmc aheilbut jjray csgillespie jooce
	Mapping protein family interactions: intramolecular and intermolecular protein family interaction repertoires in the PDB and yeast. [My Copy] J Mol Biol, Vol. 307, No. 3. (30 March 2001), pp. 929-938. by J. Park, M. Lappe, S. A. Teichmann posted to clustering networks non-redundant structure yeast database binding by chad_davis on 2008-02-19 13:36:37 as along with 5 people and 2 groups medic0747 ronkeliz ana tjimenez cjeans structural_bioinformatics Bioinformatics
	The Modular Organization of Domain Structures: Insights into Protein-Protein Binding [My Copy] PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e239. by Del, Pablo Carbonell posted to evolution networks algorithm binding by chad_davis on 2008-01-24 16:18:04 as along with 9 people bicko choonpeng grahamc cjeans zwang niallhaslam biehl marti carlk
	Identification of transient hub proteins and the possible structural basis for their multiple interactions. [My Copy] Protein science : a publication of the Protein Society, Vol. 17, No. 1. (1 January 2008), pp. 72-78. by Miho Higurashi, Takashi Ishida, Kengo Kinoshita posted to disorder networks statistics structure binding by chad_davis on 2008-01-24 16:02:47 as along with 5 people somak bicko balicea allmensch marti
	Identifying protein complexes directly from high-throughput TAP data with Markov random fields [My Copy] BMC Bioinformatics, Vol. 8 (19 December 2007), 482. by Wasinee Rungsarityotin, Roland Krause, Arno Schodl, Alexander Schliep posted to algorithm clustering complexes networks binding by chad_davis on 2007-12-21 13:42:25 as along with 1 person Yanno
	Rewiring cellular morphology pathways with synthetic guanine nucleotide exchange factors [My Copy] Nature (21 May 2007) by Brian J. Yeh, Robert J. Rutigliano, Anrica Deb, Dafna B. Sagi, Wendell A. Lim posted to networks by chad_davis on 2007-11-08 18:00:40 as along with 3 people and 2 groups balabu dbikard biomcgary Marcotte_Lab Centre de Recherches Interdisciplinaires
	A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules. [My Copy] Science, Vol. 295, No. 5553. (11 January 2002), pp. 321-324. by A. H. Tong, B. Drees, G. Nardelli, et al.G. D. Bader, B. Brannetti, L. Castagnoli, M. Evangelista, S. Ferracuti, B. Nelson, S. Paoluzi, M. Quondam, A. Zucconi, C. W. Hogue, S. Fields, C. Boone, G. Cesareni posted to networks binding by chad_davis on 2007-11-08 17:51:03 as along with 5 people tomhebbron balajis Evangelia roys carlk
	Divergence of Transcription Factor Binding Sites Across Related Yeast Species [My Copy] Science, Vol. 317, No. 5839. (10 August 2007), pp. 815-819. by Anthony R. Borneman, Tara A. Gianoulis, Zhengdong D. Zhang, et al.Haiyuan Yu, Joel Rozowsky, Michael R. Seringhaus, Lu Y. Wang, Mark Gerstein, Michael Snyder posted to proj_credo evolution gene_regulation networks yeast by chad_davis on 2007-10-27 13:32:42 as along with 22 people and 2 groups pradiptaray gdb fenghezi dbensasson caseybrown bryankr aalibes dpollard djkt mikaelhuss lusk cjeans sujaikumar zwang GustavoLacerda Jporci maximilianh cisevol njcitulike emptyhb nklee anka EisenLab cis-regulatory-evolution
	Coverage and error models of protein-protein interaction data by directed graph analysis [My Copy] Genome Biology, Vol. 8 (10 September 2007), R186. by Tony Chiang, Denise Scholtens, Deepayan Sarkar, Robert Gentleman, Wolfgang Huber posted to clustering embl networks review statistics validation yeast by chad_davis on 2007-09-27 16:28:59 as along with 5 people Yanno jfr grahamc winterschlaefer Pao-Yang
	Protein structure prediction via combinatorial assembly of sub-structural units. [My Copy] Bioinformatics, Vol. 19 Suppl 1 (2003) by Y. Inbar, H. Benyamini, R. Nussinov, H. J. Wolfson posted to algorithm complexes modelling networks structure binding by chad_davis on 2007-08-10 16:32:01 as
	A more complete, complexed and structured interactome. [My Copy] Curr Opin Struct Biol (14 June 2007) by Damien Devos, Robert B. Russell posted to embl networks review structure binding by chad_davis on 2007-07-24 17:42:04 as along with 4 people balicea skhadar choonpeng ruvido
	IntAct - open source resource for molecular interaction data [My Copy] Nucleic acids research, Vol. 35, No. Database issue. (12 January 2007), pp. D561-565. by S. Kerrien, Alam Y. Faruque, B. Aranda, et al.I. Bancarz, A. Bridge, C. Derow, E. Dimmer, M. Feuermann, A. Friedrichsen, R. Huntley, C. Kohler, J. Khadake, C. Leroy, A. Liban, C. Lieftink, Montecchi L. Palazzi, S. Orchard, J. Risse, K. Robbe, B. Roechert, D. Thorneycroft, Y. Zhang, R. Apweiler, H. Hermjakob posted to networks database binding by chad_davis on 2007-06-09 09:29:06 as along with 11 people and 3 groups dullhunk jperkins chica robert85 mbehbah1 diamantis guhjy joergkurtwegner lpfernandes carlk bicko Molecular-Modelling Drug-Design Cheminformatics
	NIH workshop on structural proteomics of biological complexes. [My Copy] Structure, Vol. 11, No. 9. (September 2003), pp. 1043-1047. by A. Sali posted to binding complexes networks structure by chad_davis on 2007-05-18 14:41:00 as
	The Database of Interacting Proteins: 2004 update [My Copy] Nucl. Acids Res., Vol. 32, No. suppl_1. (1 January 2004), pp. D449-451. by L. Salwinski, C. S. Miller, A. J. Smith, F. K. Pettit, J. U. Bowie, D. Eisenberg posted to networks database binding by chad_davis on 2007-04-10 11:08:26 as along with 4 people jperkins npozo minostro bicko
	BIND: the Biomolecular Interaction Network Database. [My Copy] Nucleic acids research, Vol. 31, No. 1. (1 January 2003), pp. 248-250. by G. D. Bader, D. Betel, C. W. Hogue posted to networks database binding by chad_davis on 2007-04-10 11:05:39 as along with 9 people and 2 groups bertelsen web03 viktor21614 okarsligil lfriedl dullhunk gurkanbebek dragonrez bicko kdl Bioinformatics
	A comprehensive two-hybrid analysis to explore the yeast protein interactome. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 8. (10 April 2001), pp. 4569-4574. by T. Ito, T. Chiba, R. Ozawa, M. Yoshida, M. Hattori, Y. Sakaki posted to networks yeast binding by chad_davis on 2007-04-02 19:27:31 as along with 19 people and 2 groups MarcJungbluth chica lawraga semin kristallreiner adiel dragonrez okarsligil lfriedl balajis nuke2005 kengg ruvido gcalda lpfernandes shikin hplatero csanford carlk kdl Bioinformatics
	Signaling by fibroblast growth factors: the inside story. [My Copy] Sci STKE, Vol. 2001, No. 106. (30 October 2001) by M. Goldfarb posted to evolution gene_regulation networks review binding by chad_davis on 2007-03-26 16:35:39 as
	Relating Three-Dimensional Structures to Protein Networks Provides Evolutionary Insights [My Copy] Science, Vol. 314, No. 5807. (22 December 2006), pp. 1938-1941. by P. M. Kim, L. J. Lu, Y. Xia, M. B. Gerstein posted to structure networks evolution binding by chad_davis on 2007-02-07 18:58:15 as along with 23 people and 2 groups ucbcjbm pablocarb mgomes rsaito MatthiasReimann cerca bicko lfriedl Einat tny choonpeng timflutre grahamc ramensky massivemayhem efge lpfernandes cdeane Pao-Yang phoenixzxl carlk paolomarcatili saket structural_bioinformatics kdl
	Ten thousand interactions for the molecular biologist [My Copy] Nature Biotechnology, Vol. 22, No. 10. (06 October 2004), pp. 1317-1321. by Patrick Aloy, Robert B. Russell posted to structure review networks embl binding by chad_davis on 2007-02-05 13:46:41 as along with 13 people and 2 groups ucbcjbm flbarroso mikaellund baaden jwm bicko dullhunk dgront drastic ruvido Evangelia higueruelo timg Radiation_Damage Stressosome
	Taking the mystery out of biological networks. [My Copy] EMBO Rep, Vol. 5, No. 4. (April 2004), pp. 349-350. by P. Aloy, R. B. Russell posted to review networks modelling embl by chad_davis on 2007-02-05 13:44:46 as along with 3 people bicko wnpx mmt
	Peptides mediating interaction networks: new leads at last. [My Copy] Curr Opin Biotechnol, Vol. 17, No. 5. (October 2006), pp. 465-471. by V. Neduva, R. B. Russell posted to structure review networks embl drug binding by chad_davis on 2007-02-05 13:18:58 as along with 2 people zdai Evangelia
	Potential artefacts in protein-interaction networks. [My Copy] FEBS Lett, Vol. 530, No. 1-3. (23 October 2002), pp. 253-254. by P. Aloy, R. B. Russell posted to yeast statistics review networks modelling embl binding by chad_davis on 2007-02-05 10:46:12 as along with 3 people wnpx gurkanbebek ruvido
	Dynamic complex formation during the yeast cell cycle. [My Copy] Science (New York, N.Y.), Vol. 307, No. 5710. (4 February 2005), pp. 724-727. by U. de Lichtenberg, L. J. Jensen, S. Brunak, P. Bork posted to binding complexes embl networks yeast by chad_davis on 2007-02-05 10:39:28 as along with 12 people and 1 group chica mdimmic balajis wnpx koller massivemayhem cjeans arne phoenixzxl larsjuhljensen carlk gjuggler dIEMoSIRIS
	Evaluation of clustering algorithms for protein-protein interaction networks [My Copy] BMC Bioinformatics, Vol. 7 (06 November 2006), 488. by Sylvain Brohee, Jacques van Helden posted to algorithm clustering networks ppi review yeast by chad_davis on 2006-11-12 15:10:20 as along with 16 people and 1 group kaarsinogen pdelosri jfr balajis nirfriedman dquest grahamc cjeans hpaces Pao-Yang oktie carlk Borelli AbnerCYH cerca ethkim EPFL_SB_ITP_LBS
	The DIMA web resourceexploring the protein domain network [My Copy] Bioinformatics, Vol. 22, No. 8. (15 April 2006), pp. 997-998. by Philipp Pagel, Matthias Oesterheld, Dmitrij Frishman posted to database networks structure binding service by chad_davis on 2006-06-23 11:34:52 as along with 3 people and 2 groups marcius bootsy kintoki BioinfoCIPF SGU-CIPF

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structure	236
binding	152
algorithm	136
review	112
embl	98
proj_disocons	82
database	81
complexes	80
classic	79
classification	79
proj_assembly	66
evolution	64
statistics	64
networks	58
disorder	53
modelling	49
service	46
feature_selection	44
ppi	42
proj_credo	40
data_integration	36
download	36
gene_regulation	30
yeast	29
annotation	28
proj_interprets	27
toolkit	25
validation	24
clustering	22
experimental	20
alignment	19
microarray	18
disease	16
chemistry	15
non-redundant	12
proj_stabperf	11
ensemble	10
data_mining	9
mpi	9
docking	8
drug	7
proj_cct	6
proj_bachelor	4
distributed	3

chad_davis's networks [58 articles] Export

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