chad_davis's ppi [42 articles] Export

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	STRING 8--a global view on proteins and their functional interactions in 630 organisms [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_1. (1 January 2009), pp. D412-416. by Lars J. Jensen, Michael Kuhn, Manuel Stark, et al.Samuel Chaffron, Chris Creevey, Jean Muller, Tobias Doerks, Philippe Julien, Alexander Roth, Milan Simonovic, Peer Bork, Christian von Mering posted to annotation data_integration data_mining database embl networks ppi by chad_davis on 2009-02-01 19:31:10 as along with 15 people and 1 group carlk mitko ilyashl hagechouchin443 lptolik kshameer allysonlister larsjuhljensen druvus guhjy renatomilani grahamc behindtherabbit kgutwin biehl Bioinformatics
	HADDOCK versus HADDOCK: new features and performance of HADDOCK2.0 on the CAPRI targets. [My Copy] Proteins, Vol. 69, No. 4. (1 December 2007), pp. 726-733. by S. J. de Vries, A. D. van Dijk, M. Krzeminski, et al.M. van Dijk, A. Thureau, V. Hsu, T. Wassenaar, A. M. Bonvin posted to algorithm binding complexes docking download modelling ppi proj_assembly structure by chad_davis on 2009-01-14 13:39:14 as along with 1 person martainn
	HADDOCK: A Protein−Protein Docking Approach Based on Biochemical or Biophysical Information [My Copy] Journal of the American Chemical Society, Vol. 125, No. 7. (1 February 2003), pp. 1731-1737. by Cyril Dominguez, Rolf Boelens, Alexandre M. J. J. Bonvin posted to algorithm binding complexes docking download modelling ppi proj_assembly proj_interprets structure by chad_davis on 2009-01-14 13:34:03 as along with 10 people bmduggan laurabailey A_Coletta_Thesis betainverse dgruiz bicko bluvsh1 gloria ruvido yalexeev
	An evolutionary and structural characterization of mammalian protein complex organization. [My Copy] BMC genomics, Vol. 9, No. 1. (23 December 2008) by Philip Wong, Sonja Althammer, Andrea Hildebrand, et al.Andreas Kirschner, Philipp Pagel, Bernd Geissler, Pawel Smialowski, Florian Blöchl, Matthias Oesterheld, Thorsten Schmidt, Normann Strack, Fabian J. Theis, Andreas Ruepp, Dmitrij Frishman posted to complexes evolution ppi proj_assembly structure by chad_davis on 2008-12-26 21:54:40 as along with 3 people chica zwang phoenixzxl
	Malleable machines in transcription regulation: the mediator complex. [My Copy] PLoS computational biology, Vol. 4, No. 12. (December 2008) by A. Tóth-Petróczy, C. J. Oldfield, I. Simon, et al.Y. Takagi, A. K. Dunker, V. N. Uversky, M. Fuxreiter posted to binding complexes disorder ppi proj_assembly proj_disocons structure by chad_davis on 2008-12-26 21:41:43 as along with 2 people siebert akraemer
	Association rate constants of ras-effector interactions are evolutionarily conserved. [My Copy] PLoS computational biology, Vol. 4, No. 12. (December 2008) by C. Kiel, D. Aydin, L. Serrano posted to binding complexes embl evolution ppi structure by chad_davis on 2008-12-26 21:31:29 as along with 2 people barry ras
	Age-Dependent Evolution of the Yeast Protein Interaction Network Suggests a Limited Role of Gene Duplication and Divergence [My Copy] PLoS Comput Biol, Vol. 4, No. 11. (28 November 2008), e1000232. by Wan K. Kim, Edward M. Marcotte posted to complexes evolution networks ppi proj_assembly proj_interprets statistics validation by chad_davis on 2008-12-19 09:35:41 as along with 7 people wangbo dakelley biomcgary cabbagesofdoom grahamc bpcusack tmmurali
	A dataset of protein-protein interfaces generated with a sequence-order-independent comparison technique. [My Copy] J Mol Biol, Vol. 260, No. 4. (26 July 1996), pp. 604-620. by C. J. Tsai, S. L. Lin, H. J. Wolfson, R. Nussinov posted to algorithm binding classic complexes database non-redundant ppi proj_assembly proj_interprets statistics structure by chad_davis on 2008-12-18 22:10:13 as along with 1 person bicko
	Residue contact-count potentials are as effective as residue-residue contact-type potentials for ranking protein decoys. [My Copy] BMC structural biology, Vol. 8 (08 December 2008), 53. by Dan M. Bolser, Ioannis Filippis, Henning Stehr, Jose Duarte, Michael Lappe posted to algorithm binding feature_selection ppi proj_interprets statistics structure validation by chad_davis on 2008-12-18 20:51:09 as along with 3 people tcschen RamuAnandakrishnan krapnik
	Integrating Expression Data with Domain Interaction Networks [My Copy] Bioinformatics (19 August 2008), btn437. by Dorothea Emig, Melissa S. Cline, Thomas Lengauer, Mario Albrecht posted to data_integration download evolution microarray networks ppi proj_assembly proj_stabperf by chad_davis on 2008-12-18 20:35:43 as along with 7 people jfr guhjy zwang barriot druvus zimbo1 grahamc
	The self-assembly and evolution of homomeric protein complexes [My Copy] (22 Nov 2008) by Gabriel Villar, Alex W. Wilber, Alex J. Williamson, et al.Parvinder Thiara, Jonathan P. K. Doye, Ard A. Louis, Mara N. Jochum, Anna C. F. Lewis, Emmanuel D. Levy posted to binding complexes evolution modelling ppi proj_assembly structure by chad_davis on 2008-12-18 20:23:39 as
	3did Update: domain-domain and peptide-mediated interactions of known 3D structure. [My Copy] Nucleic acids research (25 October 2008) by Amelie Stein, Alejandro Panjkovich, Patrick Aloy posted to binding classic database embl ppi proj_assembly proj_interprets by chad_davis on 2008-10-29 16:29:48 as
	MODBASE, a database of annotated comparative protein structure models and associated resources. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (23 January 2009) by Ursula Pieper, Narayanan Eswar, Ben M. Webb, et al.David Eramian, Libusha Kelly, David T. Barkan, Hannah Carter, Parminder Mankoo, Rachel Karchin, Marc A. Marti-Renom, Fred P. Davis, Andrej Sali posted to classic complexes database modelling ppi proj_assembly service structure by chad_davis on 2008-10-27 12:47:02 as along with 3 people tjimenez noraziz medic0747
	Organization of Physical Interactomes as Uncovered by Network Schemas [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (24 October 2008), e1000203. by Eric Banks, Elena Nabieva, Bernard Chazelle, Mona Singh posted to algorithm data_mining networks ppi proj_assembly by chad_davis on 2008-10-27 12:38:59 as along with 4 people sivaramanb roys marck grahamc
	Targeting and tinkering with interaction networks [My Copy] Nature Chemical Biology, Vol. 4, No. 11. (20 October 2008), pp. 666-673. by Robert B. B. Russell, Patrick Aloy posted to embl networks ppi proj_assembly review by chad_davis on 2008-10-27 11:58:57 as along with 3 people and 1 group lees jperkins zwang Orengo Group Journal Picks
	CORUM: the comprehensive resource of mammalian protein complexes. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (11 January 2008), pp. D646-650. by Andreas Ruepp, Barbara Brauner, Irmtraud Dunger-Kaltenbach, et al.Goar Frishman, Corinna Montrone, Michael Stransky, Brigitte Waegele, Thorsten Schmidt, Octave Noubibou N. Doudieu, Volker Stümpflen, H. Werner Mewes posted to annotation complexes database ppi proj_assembly by chad_davis on 2008-10-20 13:57:58 as along with 6 people dragonrez poirel carlk tmmurali guhjy shung
	Inferring protein domain interactions from databases of interacting proteins. [My Copy] Genome Biol, Vol. 6, No. 10. (2005) by R. Riley, C. Lee, C. Sabatti, D. Eisenberg posted to algorithm binding ppi proj_assembly proj_interprets statistics structure validation by chad_davis on 2008-10-20 12:49:20 as along with 4 people maryee j3xucite iris_2001 phoenixzxl
	An integrative approach for predicting interactions of protein regions. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008) by Sven-Eric E. Schelhorn, Thomas Lengauer, Mario Albrecht posted to algorithm binding complexes ppi proj_assembly proj_interprets structure by chad_davis on 2008-10-16 13:59:56 as along with 1 person kgutwin
	Assembly reflects evolution of protein complexes. [My Copy] Nature, Vol. 453, No. 7199. (26 June 2008), pp. 1262-1265. by Emmanuel D. Levy, Elisabetta B. Erba, Carol V. Robinson, Sarah A. Teichmann posted to complexes evolution experimental ppi proj_assembly structure by chad_davis on 2008-10-14 14:51:52 as along with 11 people and 1 group robfsouza chica noraziz psique marck paulschlesinger neils jwm zwang faion phoenixzxl KeatingJClub
	Fitting a Geometric Graph to a Protein-Protein Interaction Network. [My Copy] Bioinformatics (14 March 2008) by Desmond J. J. Higham, Marija Rasajski, Natasa Przulj posted to algorithm networks ppi proj_assembly by chad_davis on 2008-10-14 10:36:47 as along with 10 people and 1 group tmmurali AbnerCYH grahamc bootsy maralena scienbox lidaiqiang1981 paolomarcatili guhjy mariap3636 untranet
	The unfoldomics decade: an update on intrinsically disordered proteins. [My Copy] BMC genomics, Vol. 9 Suppl 2 (2008) by A. K. Dunker, C. J. Oldfield, J. Meng, et al.P. Romero, J. Y. Yang, J. W. Chen, V. Vacic, Z. Obradovic, V. N. Uversky posted to binding disorder ppi proj_disocons review structure by chad_davis on 2008-10-10 17:17:41 as along with 6 people kiekyon niallhaslam robfsouza carlosjavierna guhjy higueruelo
	Optimal contact map alignment of protein-protein interfaces. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 20. (15 October 2008), pp. 2324-2328. by V. Pulim, B. Berger, J. Bienkowska posted to algorithm alignment binding complexes ppi proj_interprets structure by chad_davis on 2008-10-09 18:28:32 as along with 1 person i000
	Structural characterization of assemblies from overall shape and subcomplex compositions. [My Copy] Structure, Vol. 13, No. 3. (March 2005), pp. 435-445. by F. Alber, M. F. Kim, A. Sali posted to algorithm binding complexes data_integration modelling ppi proj_assembly structure by chad_davis on 2008-10-08 15:51:24 as along with 1 person faion
	Computational methods for the prediction of protein interactions. [My Copy] Curr Opin Struct Biol, Vol. 12, No. 3. (June 2002), pp. 368-373. by A. Valencia, F. Pazos posted to algorithm ppi proj_assembly proj_interprets review by chad_davis on 2008-10-08 15:48:08 as along with 4 people bicko Robinder eckart_bindewald marti
	Interactome data and databases: different types of protein interaction. [My Copy] Comparative and functional genomics, Vol. 5, No. 2. (2004), pp. 173-178. by De Las, A. de Luis posted to networks ppi proj_assembly proj_interprets review by chad_davis on 2008-10-08 10:56:48 as
	APID: Agile Protein Interaction DataAnalyzer. [My Copy] Nucleic acids research, Vol. 34, No. Web Server issue. (1 July 2006) by C. Prieto, De Las posted to data_integration database download networks ppi proj_assembly proj_interprets service by chad_davis on 2008-10-08 10:53:05 as along with 1 person satre
	Moonlighting proteins. [My Copy] Trends in biochemical sciences, Vol. 24, No. 1. (January 1999), pp. 8-11. by C. J. Jeffery posted to annotation classic evolution ppi review by chad_davis on 2008-10-07 10:24:13 as along with 2 people druvus dullhunk
	PRISM: protein interactions by structural matching. [My Copy] Nucleic acids research, Vol. 33, No. Web Server issue. (1 July 2005) by U. Ogmen, O. Keskin, A. S. Aytuna, R. Nussinov, A. Gursoy posted to algorithm binding ppi proj_assembly proj_interprets structure service by chad_davis on 2008-10-07 10:15:00 as along with 4 people apaydin bicko j3xucite henschel
	Identifying Cognate Binding Pairs among a Large Set of Paralogs: The Case of PE/PPE Proteins of Mycobacterium tuberculosis [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000174. by Robert Riley, Matteo Pellegrini, David Eisenberg posted to algorithm evolution ppi proj_interprets by chad_davis on 2008-10-06 13:56:25 as along with 2 people robfsouza Ema
	A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences. [My Copy] BMC bioinformatics, Vol. 9 (06 May 2008), 229. by Claudia Chica, Alberto Labarga, Cathryn M. Gould, Rodrigo Lopez, Toby J. Gibson posted to algorithm annotation classification disorder embl evolution ppi statistics service by chad_davis on 2008-10-06 12:49:02 as along with 6 people chica niallhaslam Evangelia cabbagesofdoom biehl alanrw
	Analyzing Protein Interaction Networks Using Structural Information [My Copy] Annual Review of Biochemistry, Vol. 77, No. 1. (2008) by Christina Kiel, Pedro Beltrao, Luis Serrano posted to data_integration embl networks ppi proj_assembly proj_interprets review structure by chad_davis on 2008-09-17 16:51:18 as along with 11 people and 1 group msuarezdiez flbarroso kshameer Borelli bicko neils Evangelia grahamc paolomarcatili phoenixzxl zwang structural_bioinformatics
	STRING 7--recent developments in the integration and prediction of protein interactions. [My Copy] Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007) by C. von Mering, L. J. Jensen, M. Kuhn, et al.S. Chaffron, T. Doerks, B. Krüger, B. Snel, P. Bork posted to classic data_integration database embl ppi proj_assembly service by chad_davis on 2008-09-16 09:59:56 as along with 16 people anf dragonrez druvus Cortel wenhui guhjy kuhn balajis fisherp raiyar massivemayhem larsjuhljensen higueruelo renatomilani carlk bicko
	MINT: the Molecular INTeraction database. [My Copy] Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007) by Chatr A. Aryamontri, A. Ceol, L. M. Palazzi, et al.G. Nardelli, M. V. Schneider, L. Castagnoli, G. Cesareni posted to database ppi proj_interprets service by chad_davis on 2008-09-16 09:57:32 as along with 3 people viktor21614 massivemayhem bicko
	DAPID: a 3D-domain annotated protein-protein interaction database. [My Copy] Genome informatics. International Conference on Genome Informatics, Vol. 17, No. 2. (2006), pp. 206-215. by Y. C. Chen, H. C. Chen, J. M. Yang posted to database ppi proj_assembly proj_interprets service structure by chad_davis on 2008-08-26 18:18:15 as along with 1 person bicko
	PPiClust: EFFICIENT CLUSTERING OF 3D PROTEIN-PROTEIN INTERACTION INTERFACES. [My Copy] Journal of bioinformatics and computational biology, Vol. 6, No. 3. (June 2008), pp. 415-433. by Z. Aung, S. H. Tan, S. K. Ng, K. L. Tan posted to algorithm clustering ppi proj_assembly proj_interprets structure by chad_davis on 2008-08-26 18:15:46 as along with 1 person bicko
	Interaction networks for systems biology. [My Copy] FEBS Lett (15 February 2008) by Samuel Bader, Sebastian Kühner, Anne posted to embl networks ppi review by chad_davis on 2008-02-25 10:42:22 as along with 4 people yyby ruvido zwang adacier
	Identification of tissue-specific cis-regulatory modules based on interactions between transcription factors [My Copy] BMC Bioinformatics, Vol. 8 (09 November 2007), 437. by Xueping Yu, Jimmy Lin, Donald J. Zack, Jiang Qian posted to algorithm gene_regulation ppi proj_credo by chad_davis on 2007-11-21 11:03:32 as along with 9 people isimpson guhjy mikaelhuss nklee maximilianh idonaldson njcitulike bootsy snow_dragon
	Visualization of transient encounter complexes in protein–protein association [My Copy] Nature (15 October 2006) by Chun Tang, Junji Iwahara, Marius G. Clore posted to binding complexes ppi structure by chad_davis on 2006-12-01 13:05:09 as along with 2 people and 1 group ras sobolevnrm baker-group
	Evaluation of clustering algorithms for protein-protein interaction networks [My Copy] BMC Bioinformatics, Vol. 7 (06 November 2006), 488. by Sylvain Brohee, Jacques van Helden posted to algorithm clustering networks ppi review yeast by chad_davis on 2006-11-12 15:10:20 as along with 16 people and 1 group kaarsinogen pdelosri jfr balajis nirfriedman dquest grahamc cjeans hpaces Pao-Yang oktie carlk Borelli AbnerCYH cerca ethkim EPFL_SB_ITP_LBS
	MPact: the MIPS protein interaction resource on yeast. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006) by U. Gueldener, M. Muensterkoetter, M. Oesterheld, et al.P. Pagel, A. Ruepp, H. W. Mewes, V. Stuempflen posted to database ppi yeast by chad_davis on 2006-07-11 13:51:27 as along with 2 people raiyar carlk
	Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. [My Copy] Nature, Vol. 440, No. 7084. (30 March 2006), pp. 637-643. by Nevan J. Krogan, Gerard Cagney, Haiyuan Yu, et al.Gouqing Zhong, Xinghua Guo, Alexandr Ignatchenko, Joyce Li, Shuye Pu, Nira Datta, Aaron P. Tikuisis, Thanuja Punna, Jos, Michael Shales, Xin Zhang, Michael Davey, Mark D. Robinson, Alberto Paccanaro, James E. Bray, Anthony Sheung, Bryan Beattie, Dawn P. Richards, Veronica Canadien, Atanas Lalev, Frank Mena, Peter Wong, Andrei Starostine, Myra M. Canete, James Vlasblom, Samuel Wu, Chris Orsi, Sean R. Collins, Shamanta Chandran, Robin Haw, Jennifer J. Rilstone, Kiran Gandi, Natalie J. Thompson, Gabe Musso, Peter St Onge, Shaun Ghanny, Mandy H. Y. Lam, Gareth Butland, Amin, Shigehiko Kanaya, Ali Shilatifard, Erin O'Shea, Jonathan S. Weissman, James C. Ingles, Timothy R. Hughes, John Parkinson, Mark Gerstein, Shoshana J. Wodak, Andrew Emili, Jack F. Greenblatt posted to complexes networks ppi structure yeast by chad_davis on 2006-06-23 09:19:04 as along with 28 people and 5 groups paccanarolab ajbattle mgomes jxl bicko cerca jiny Borelli lfriedl balajis marcius tardigrade nirfriedman balabu j3xucite nickluscombe koller raiyar cjeans nicoleq Evangelia csaveanu frohike carlk hplatero chasmand mapplab ethkim Paccanaro Lab kdl EBI-regulation BioinfoCIPF SGU-CIPF
	Decomposition of overlapping protein complexes: A graph theoretical method for analyzing static and dynamic protein associations [My Copy] Algorithms for Molecular Biology, Vol. 1, No. 1. (26 April 2006), 7. by Elena Zotenko, Katia S. Guimaraes, Raja Jothi, Teresa M. Przytycka posted to complexes networks ppi by chad_davis on 2006-06-18 16:20:21 as along with 4 people and 1 group carlk saket lfriedl AbnerCYH kdl

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structure	236
binding	152
algorithm	136
review	112
embl	98
proj_disocons	82
database	81
complexes	80
classic	79
classification	79
proj_assembly	66
evolution	64
statistics	64
networks	58
disorder	53
modelling	49
service	46
feature_selection	44
ppi	42
proj_credo	40
data_integration	36
download	36
gene_regulation	30
yeast	29
annotation	28
proj_interprets	27
toolkit	25
validation	24
clustering	22
experimental	20
alignment	19
microarray	18
disease	16
chemistry	15
non-redundant	12
proj_stabperf	11
ensemble	10
data_mining	9
mpi	9
docking	8
drug	7
proj_cct	6
proj_bachelor	4
distributed	3

chad_davis's ppi [42 articles] Export

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