chad_davis's proj_credo [40 articles] Export

Recent papers added to chad_davis's library classified by the tag proj_credo. You can also see everyone's proj_credo.

	MotifVoter: a novel ensemble method for fine-grained integration of generic motif finders. [My Copy] Bioinformatics (Oxford, England) (12 August 2008) by Edward Wijaya, Siu, Ngo, Rajaraman Kanagasabai, Wing posted to algorithm classification ensemble gene_regulation proj_credo by chad_davis on 2008-08-26 18:08:44 as along with 5 people wowalz druvus nuin maximilianh idonaldson
	Identifying DNA and protein patterns with statistically significant alignments of multiple sequences [My Copy] Bioinformatics, Vol. 15, No. 7. (1 July 1999), pp. 563-577. by Gz Hertz, Gd Stormo posted to algorithm alignment download gene_regulation proj_credo statistics by chad_davis on 2008-07-06 17:25:57 as along with 8 people and 1 group megraw tonamswish wowalz yylin tuck indigoviolet dquest lusk EisenLab
	POIMs: positional oligomer importance matrices--understanding support vector machine-based signal detectors [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i6-14. by Soren Sonnenburg, Alexander Zien, Petra Philips, Gunnar Ratsch posted to algorithm classification ensemble proj_credo proj_disocons by chad_davis on 2008-07-05 16:29:44 as along with 2 people babakap papamicd
	Eukaryotic transcription factor binding sites--modeling and integrative search methods. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 11. (1 April 2008), pp. 1325-1331. by Sridhar Hannenhalli posted to gene_regulation proj_credo review binding by chad_davis on 2008-06-15 13:35:43 as along with 14 people fenghezi isimpson wowalz cassj druvus nklee oannes hplatero maximilianh heliopais bootsy Ema sameetmehta guhjy
	The Eukaryotic Promoter Database (EPD) [My Copy] Nucl. Acids Res., Vol. 28, No. 1. (1 January 2000), pp. 302-303. by Rouaida C. Perier, Viviane Praz, Thomas Junier, Claude Bonnard, Philipp Bucher posted to database gene_regulation proj_credo service by chad_davis on 2008-03-10 10:18:59 as
	Assessment of composite motif discovery methods. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by Kjetil Klepper, Geir Sandve, Osman Abul, Jostein Johansen, Finn Drablos posted to gene_regulation proj_credo review by chad_davis on 2008-02-26 21:25:14 as along with 8 people and 1 group wowalz nklee maximilianh idonaldson xili03 csdhwang isimpson yoonk Motif Discovery
	Practical Strategies for Discovering Regulatory DNA Sequence Motifs [My Copy] PLoS Comput Biol, Vol. 2, No. 4. (28 April 2006), e36. by Kenzie D. Macisaac, Ernest Fraenkel posted to classification ensemble gene_regulation proj_credo review by chad_davis on 2008-01-28 10:22:04 as along with 17 people and 2 groups Jporci leemond31 Dulce maximilianh heliopais daforerog natstreet druvus giovenko nuin bryankr ana balicea hggr GustavoLacerda svdate kristallreiner structural_bioinformatics Bioinformatics
	Applied bioinformatics for the identification of regulatory elements. [My Copy] Nat Rev Genet, Vol. 5, No. 4. (April 2004), pp. 276-287. by W. W. Wasserman, A. Sandelin posted to proj_credo gene_regulation review by chad_davis on 2007-12-11 14:02:48 as along with 18 people and 8 groups wowalz yas icases ana moborg gpalidwor dchughes nickluscombe johncumbers giovanni xiaobeizhao bertelsen Stew nklee jdiezperezj ArtemPankin mariakmejia isimpson structural_bioinformatics Bioinformatics EisenLab G4ID EBI-regulation GeschwindLab TNT Genetics-of-Gambling
	Identification of tissue-specific cis-regulatory modules based on interactions between transcription factors [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (09 November 2007), 437. by Xueping Yu, Jimmy Lin, Donald J. Zack, Jiang Qian posted to algorithm gene_regulation ppi proj_credo by chad_davis on 2007-11-21 11:03:32 as along with 10 people roys isimpson guhjy mikaelhuss nklee maximilianh idonaldson njcitulike bootsy snow_dragon
	What's wrong with Bonferroni adjustments. [My Copy] BMJ (Clinical research ed.), Vol. 316, No. 7139. (18 April 1998), pp. 1236-1238. by T. V. Perneger posted to proj_credo proj_disocons review statistics validation by chad_davis on 2007-11-20 13:01:43 as along with 5 people and 1 group heliopais VGreiff Zephyrus ucbcjbm StephenWeigand Statistical Methods sans Jargon
	OSCAR: One-class SVM for Accurate Recognition of Cis-elements [My Copy] Bioinformatics (5 October 2007), btm473. by Bo Jiang, Michael Q. Zhang, Xuegong Zhang posted to algorithm proj_credo classification feature_selection gene_regulation by chad_davis on 2007-11-19 10:24:43 as along with 7 people suizifish cassj tmmurali cabbagezs maximilianh idonaldson isimpson
	Melina II: a web tool for comparisons among several predictive algorithms to find potential motifs from promoter regions. [My Copy] Nucleic Acids Res, Vol. 35, No. Web Server issue. (1 July 2007) by T. Okumura, H. Makiguchi, Y. Makita, R. Yamashita, K. Nakai posted to ensemble gene_regulation proj_credo service by chad_davis on 2007-11-16 13:36:52 as along with 1 person guhjy
	SCPD: a promoter database of the yeast Saccharomyces cerevisiae. [My Copy] Bioinformatics, Vol. 15, No. 7-8. (g 1999), pp. 607-611. by J. Zhu, M. Q. Zhang posted to database proj_credo gene_regulation yeast by chad_davis on 2007-11-09 09:10:32 as along with 4 people xiaobeizhao lusk nklee njcitulike
	Divergence of Transcription Factor Binding Sites Across Related Yeast Species [My Copy] Science, Vol. 317, No. 5839. (10 August 2007), pp. 815-819. by Anthony R. Borneman, Tara A. Gianoulis, Zhengdong D. Zhang, et al.Haiyuan Yu, Joel Rozowsky, Michael R. Seringhaus, Lu Y. Wang, Mark Gerstein, Michael Snyder posted to proj_credo evolution gene_regulation networks yeast by chad_davis on 2007-10-27 13:32:42 as along with 22 people and 2 groups pradiptaray gdb fenghezi dbensasson caseybrown bryankr aalibes dpollard djkt mikaelhuss lusk cjeans sujaikumar zwang GustavoLacerda Jporci maximilianh cisevol njcitulike emptyhb nklee anka EisenLab cis-regulatory-evolution
	Machine Learning and Its Applications to Biology. [My Copy] PLoS Comput Biol, Vol. 3, No. 6. (29 June 2007) by Adi L. L. Tarca, Vincent J. J. Carey, Xue, Roberto Romero, Sorin Drăghici posted to algorithm proj_credo proj_disocons proj_stabperf classification clustering review statistics by chad_davis on 2007-09-03 15:43:35 as along with 5 people and 1 group klouie jfr rsantana gsiwo groepl Bioinformatics
	A novel ensemble learning method for de novo computational identification of DNA binding sites [My Copy] BMC Bioinformatics, Vol. 8 (12 July 2007), 249. by Arijit Chakravarty, Jonathan M. Carlson, Radhika S. Khetani, Robert H. Gross posted to algorithm download ensemble feature_selection gene_regulation proj_credo service by chad_davis on 2007-08-08 12:26:30 as along with 2 people and 1 group GustavoLacerda nklee Bioinformatics
	Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. [My Copy] Nature, Vol. 447, No. 7146. (14 June 2007), pp. 799-816. by Encode Consortium posted to annotation classic evolution gene_regulation proj_credo by chad_davis on 2007-07-26 16:13:18 as along with 25 people and 2 groups bartjacobse daveGerrard daforerog isimpson sharpton jessopher timhubbard scjparker polivares coela ilyashl aprasad myrtilus daed waszak guhjy jfr kengg olympos blobbybirdman shikin fpattyn yevishere elfar eskay Bioinformatics UH - Computational Biology
	Practical implementation of nonlinear time series methods: The TISEAN package. [My Copy] Chaos, Vol. 9, No. 2. (June 1999), pp. 413-435. by Rainer Hegger, Holger Kantz, Thomas Schreiber posted to algorithm toolkit proj_disocons proj_credo by chad_davis on 2007-01-01 18:12:18 as along with 1 person ocs
	SVM ensemble algorithm for regulatory motif detection [My Copy] (2007) by Chad A. Davis, Michael Lidschreiber posted to classification algorithm proj_credo by chad_davis on 2007-01-01 17:41:10 as
	Redefining the goals of protein secondary structure prediction [My Copy] Journal of Molecular Biology, Vol. 235, No. 1. (7 January 1994), pp. 13-26. by Burkhard Rost, Chris Sander, Reinhard Schneider posted to classic classification structure proj_credo by chad_davis on 2006-10-24 19:01:39 as
	PAML: a program package for phylogenetic analysis by maximum likelihood. [My Copy] Computer applications in the biosciences : CABIOS, Vol. 13, No. 5. (October 1997), pp. 555-556. by Z. Yang posted to download proj_credo toolkit by chad_davis on 2006-10-24 07:55:44 as along with 15 people and 3 groups seb1 thegoose2 alexeid druvus jmjimenez bjorns chrn indigoviolet penka BioNica stajich pv usagi-kirin tharris skumagai EisenLab Nie Mycology
	Melina: motif extraction from promoter regions of potentially co-regulated genes. [My Copy] Bioinformatics, Vol. 19, No. 3. (12 February 2003), pp. 423-424. by N. Poluliakh, T. Takagi, K. Nakai posted to proj_credo by chad_davis on 2006-07-21 13:50:25 as
	EMD: an ensemble algorithm for discovering regulatory motifs in DNA sequences. [My Copy] BMC bioinformatics, Vol. 7 (13 July 2006), 342. by Jianjun Hu, Yifeng D. Yang, Daisuke Kihara posted to algorithm proj_credo gene_regulation by chad_davis on 2006-07-21 08:15:01 as along with 2 people wowalz dquest
	Discovery of Regulatory Elements by a Computational Method for Phylogenetic Footprinting [My Copy] Genome Res., Vol. 12, No. 5. (1 May 2002), pp. 739-748. by Mathieu Blanchette, Martin Tompa posted to proj_credo by chad_davis on 2006-07-11 08:51:13 as along with 7 people and 2 groups wowalz coldmeadow balajis lyongu dpollard dquest csdhwang EisenLab cis-regulatory-evolution
	Algorithms for phylogenetic footprinting. [My Copy] J Comput Biol, Vol. 9, No. 2. (2002), pp. 211-223. by M. Blanchette, B. Schwikowski, M. Tompa posted to review proj_credo by chad_davis on 2006-07-11 08:49:12 as along with 2 people nklee dquest
	In silico sequence evolution with site-specific interactions along phylogenetic trees [My Copy] Bioinformatics, Vol. 22, No. 6. (15 March 2006), pp. 716-722. by Tanja Gesell, Arndt von Haeseler posted to download evolution modelling proj_credo by chad_davis on 2006-06-23 11:13:20 as along with 2 people and 2 groups marcius tale BioinfoCIPF SGU-CIPF
	TRANSFAC: transcriptional regulation, from patterns to profiles. [My Copy] Nucleic Acids Res, Vol. 31, No. 1. (1 January 2003), pp. 374-378. by V. Matys, E. Fricke, R. Geffers, et al.E. Goessling, M. Haubrock, R. Hehl, K. Hornischer, D. Karas, A. E. Kel, Kel O. V. Margoulis, D. U. Kloos, S. Land, Lewicki B. Potapov, H. Michael, R. Muench, I. Reuter, S. Rotert, H. Saxel, M. Scheer, S. Thiele, E. Wingender posted to database proj_credo gene_regulation by chad_davis on 2006-06-19 18:06:41 as along with 8 people and 1 group raylim aprasad aalibes setar GustavoLacerda marti Auger kmdaily Dead 60's
	FootPrinter: A program designed for phylogenetic footprinting. [My Copy] Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3840-3842. by M. Blanchette, M. Tompa posted to download proj_credo by chad_davis on 2006-06-19 13:51:58 as along with 2 people kaur balajis
	DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment [My Copy] Bioinformatics, Vol. 15, No. 3. (1 March 1999), pp. 211-218. by B. Morgenstern posted to download proj_credo by chad_davis on 2006-06-19 13:50:48 as along with 1 person BioNica
	Analysis of computational approaches for motif discovery [My Copy] Algorithms for Molecular Biology, Vol. 1, No. 1. (19 May 2006), 8. by Nan Li, Martin Tompa posted to proj_credo review by chad_davis on 2006-06-18 15:06:50 as along with 11 people and 2 groups wowalz yevishere ana barry tuck dquest lusk nklee maximilianh xi03 csdhwang structural_bioinformatics Bioinformatics
	Computational Discovery of Gene Regulatory Binding Motifs: A Bayesian Perspective [My Copy] Statistical Science, Vol. 19, No. 1. (2004), pp. 188-204. by Shane T. Jensen, Shirley X. Liu, Qing Zhou, Jun S. Liu posted to proj_credo by chad_davis on 2006-05-30 13:49:00 as
	TFBS: Computational framework for transcription factor binding site analysis [My Copy] Bioinformatics, Vol. 18, No. 8. (1 August 2002), pp. 1135-1136. by B. Lenhard, W. W. Wasserman posted to gene_regulation toolkit proj_credo by chad_davis on 2006-05-11 18:19:21 as along with 5 people and 1 group tharris antonkratz ilyashl yas oannes C. elegans / WormBase
	Searching for regulatory elements in human noncoding sequences. [My Copy] Curr Opin Struct Biol, Vol. 7, No. 3. (June 1997), pp. 399-406. by L. Duret, P. Bucher posted to gene_regulation proj_credo by chad_davis on 2006-05-10 12:02:26 as along with 2 people nklee lusk
	Of mice and men: phylogenetic footprinting aids the discovery of regulatory elements. [My Copy] J Biol, Vol. 2, No. 2. (2003) by Z. Zhang, M. Gerstein posted to gene_regulation proj_credo by chad_davis on 2006-05-10 12:01:15 as
	Limitations and potentials of current motif discovery algorithms. [My Copy] Nucleic Acids Res, Vol. 33, No. 15. (2005), pp. 4899-4913. by J. Hu, B. Li, D. Kihara posted to proj_credo review by chad_davis on 2006-05-09 17:24:32 as
	CREDO: a web-based tool for computational detection of conserved sequence motifs in noncoding sequences. [My Copy] Bioinformatics, Vol. 21, No. 23. (1 December 2005), pp. 4304-4306. by T. Hindemitt, K. F. Mayer posted to gene_regulation proj_credo by chad_davis on 2006-05-09 17:14:08 as
	Finding functional features in Saccharomyces genomes by phylogenetic footprinting. [My Copy] Science, Vol. 301, No. 5629. (4 July 2003), pp. 71-76. by P. Cliften, P. Sudarsanam, A. Desikan, et al.L. Fulton, B. Fulton, J. Majors, R. Waterston, B. A. Cohen, M. Johnston posted to gene_regulation proj_credo by chad_davis on 2006-05-09 15:56:43 as along with 6 people and 1 group wowalz michaelbarton evaf dquest Eonwe cisevol cis-regulatory-evolution
	Identification and analysis of eukaryotic promoters: recent computational approaches. [My Copy] Trends Genet, Vol. 17, No. 2. (February 2001), pp. 56-60. by U. Ohler, H. Niemann posted to proj_credo gene_regulation review by chad_davis on 2006-05-09 15:48:26 as along with 4 people and 2 groups pengchy rklancer ana barry structural_bioinformatics Bioinformatics
	Assessing computational tools for the discovery of transcription factor binding sites [My Copy] Nat Biotech, Vol. 23, No. 1. (06 January 2005), pp. 137-144. by Martin Tompa, Nan Li, Timothy L. Bailey, et al.George M. Church, Bart De Moor, Eleazar Eskin, Alexander V. Favorov, Martin C. Frith, Yutao Fu, James W. Kent, Vsevolod J. Makeev, Andrei A. Mironov, William S. Noble, Giulio Pavesi, Graziano Pesole, Mireille Regnier, Nicolas Simonis, Saurabh Sinha, Gert Thijs, Jacques van Helden, Mathias Vandenbogaert, Zhiping Weng, Christopher Workman, Chun Ye, Zhou Zhu posted to proj_credo gene_regulation review by chad_davis on 2006-05-09 15:47:40 as along with 38 people and 6 groups mpizbioinfo megraw Dulce farhat wowalz mhofree jasontsai heliopais pengchy daforerog yylin cambray emptyhb bryankr icases ana barry aalibes aprasad jfr tuck lyongu tabu dquest neveaire ranb johncumbers noano xiaobeizhao olympos GustavoLacerda nklee mdimon dandaman vietanh0 ep161302 nuin Stew structural_bioinformatics Biostatistics Computational-Genomics Bioinformatics Neuroscience TNT
	A Practical Guide to Support Vector Classification [My Copy] (2000) by Chih W. Hsu, Chih C. Chang, Chih J. Lin posted to classification proj_bachelor proj_credo proj_disocons review statistics by chad_davis on 2006-03-04 12:09:32 as along with 2 people eguaus mdifranc

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structure	236
binding	152
algorithm	136
review	112
embl	98
proj_disocons	82
database	81
complexes	80
classic	79
classification	79
proj_assembly	66
evolution	64
statistics	64
networks	58
disorder	53
modelling	49
service	46
feature_selection	44
ppi	42
proj_credo	40
data_integration	36
download	36
gene_regulation	30
yeast	29
annotation	28
proj_interprets	27
toolkit	25
validation	24
clustering	22
experimental	20
alignment	19
microarray	18
disease	16
chemistry	15
non-redundant	12
proj_stabperf	11
ensemble	10
data_mining	9
mpi	9
docking	8
drug	7
proj_cct	6
proj_bachelor	4
distributed	3

chad_davis's proj_credo [40 articles] Export

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