chad_davis's proj_disocons [82 articles] Export

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	Malleable machines in transcription regulation: the mediator complex. [My Copy] PLoS computational biology, Vol. 4, No. 12. (December 2008) by A. Tóth-Petróczy, C. J. Oldfield, I. Simon, et al.Y. Takagi, A. K. Dunker, V. N. Uversky, M. Fuxreiter posted to binding complexes disorder ppi proj_assembly proj_disocons structure by chad_davis on 2008-12-26 21:41:43 as along with 2 people siebert akraemer
	The unfoldomics decade: an update on intrinsically disordered proteins. [My Copy] BMC genomics, Vol. 9 Suppl 2 (2008) by A. K. Dunker, C. J. Oldfield, J. Meng, et al.P. Romero, J. Y. Yang, J. W. Chen, V. Vacic, Z. Obradovic, V. N. Uversky posted to binding disorder ppi proj_disocons review structure by chad_davis on 2008-10-10 17:17:41 as along with 6 people kiekyon niallhaslam robfsouza carlosjavierna guhjy higueruelo
	POIMs: positional oligomer importance matrices--understanding support vector machine-based signal detectors [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i6-14. by Soren Sonnenburg, Alexander Zien, Petra Philips, Gunnar Ratsch posted to algorithm classification ensemble proj_credo proj_disocons by chad_davis on 2008-07-05 16:29:44 as along with 2 people babakap papamicd
	The role of disorder in interaction networks: a structural analysis [My Copy] Molecular Systems Biology, Vol. 4 (25 March 2008) by Philip M. Kim, Andrea Sboner, Yu Xia, Mark Gerstein posted to disorder networks proj_disocons structure yeast binding by chad_davis on 2008-06-30 10:59:42 as along with 7 people mgomes pablocarb zwang bootsy biomcgary maralena phoenixzxl
	Intrinsic disorder prediction from the analysis of multiple protein fold recognition models. [My Copy] Bioinformatics (Oxford, England) (25 June 2008) by Liam J. J. Mcguffin posted to algorithm classification data_integration disorder ensemble feature_selection proj_disocons structure service by chad_davis on 2008-06-29 10:59:50 as
	Role of intrinsic disorder in transient interactions of hub proteins. [My Copy] Proteins, Vol. 66, No. 4. (1 March 2007), pp. 761-765. by G. P. Singh, M. Ganapathi, D. Dash posted to complexes disorder networks proj_disocons binding by chad_davis on 2008-06-15 13:40:59 as along with 1 person agustinarce
	POODLE-S: Web application for predicting protein disorder by using physicochemical features and reduced amino acid set of a position specific scoring matrix. [My Copy] Bioinformatics (28 June 2007) by Kana Shimizu, Shuichi Hirose, Tamotsu Noguchi posted to algorithm classification disorder feature_selection proj_disocons service by chad_davis on 2008-04-28 15:27:18 as
	Prediction of disordered regions in proteins based on the meta approach [My Copy] Bioinformatics (20 April 2008), btn195. by Takashi Ishida, Kengo Kinoshita posted to algorithm classification disorder ensemble proj_disocons structure by chad_davis on 2008-04-28 09:47:26 as along with 1 person and 1 group niallhaslam structural_bioinformatics
	Protein disorder prediction at multiple levels of sensitivity and specificity. [My Copy] BMC genomics, Vol. 9 Suppl 1 (2008) by J. Hecker, J. Y. Yang, J. Cheng posted to algorithm classification disorder proj_disocons review structure by chad_davis on 2008-04-20 11:16:25 as
	Fuzzy complexes: polymorphism and structural disorder in protein-protein interactions. [My Copy] Trends Biochem Sci (26 November 2007) by Peter Tompa, Monika Fuxreiter posted to proj_disocons classification complexes disorder review structure binding by chad_davis on 2007-12-09 20:23:11 as
	What's wrong with Bonferroni adjustments. [My Copy] BMJ (Clinical research ed.), Vol. 316, No. 7139. (18 April 1998), pp. 1236-1238. by T. V. Perneger posted to proj_credo proj_disocons review statistics validation by chad_davis on 2007-11-20 13:01:43 as along with 5 people and 1 group heliopais VGreiff Zephyrus ucbcjbm StephenWeigand Statistical Methods sans Jargon
	Structural disorder promotes assembly of protein complexes [My Copy] BMC Structural Biology, Vol. 7, No. 1. (08 October 2007), 65. by Hedi Hegyi, Eva Schad, Peter Tompa posted to proj_disocons complexes disorder structure yeast binding by chad_davis on 2007-10-15 09:07:57 as
	POODLE-L: a two-level SVM prediction system for reliably predicting long disordered regions [My Copy] Bioinformatics, Vol. 23, No. 16. (15 August 2007), pp. 2046-2053. by Shuichi Hirose, Kana Shimizu, Satoru Kanai, Yutaka Kuroda, Tamotsu Noguchi posted to proj_disocons classification disorder feature_selection by chad_davis on 2007-09-13 16:08:33 as
	Machine Learning and Its Applications to Biology. [My Copy] PLoS Comput Biol, Vol. 3, No. 6. (29 June 2007) by Adi L. L. Tarca, Vincent J. J. Carey, Xue, Roberto Romero, Sorin Drăghici posted to algorithm proj_credo proj_disocons proj_stabperf classification clustering review statistics by chad_davis on 2007-09-03 15:43:35 as along with 5 people and 1 group klouie jfr rsantana gsiwo groepl Bioinformatics
	DisProt: the Database of Disordered Proteins. [My Copy] Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007) by M. Sickmeier, J. A. Hamilton, T. Legall, et al.V. Vacic, M. S. Cortese, A. Tantos, B. Szabo, P. Tompa, J. Chen, V. N. Uversky, Z. Obradovic, A. K. Dunker posted to disorder structure database proj_disocons by chad_davis on 2007-04-23 15:04:21 as along with 4 people carlosjavierna higueruelo choonpeng allmensch
	SMART 5: domains in the context of genomes and networks. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006) by I. Letunic, R. R. Copley, B. Pils, S. Pinkert, J. Schultz, P. Bork posted to classic classification disorder embl proj_disocons service by chad_davis on 2007-04-02 19:40:37 as along with 1 person siebertm
	Knowledge discovery and knowledge validation in intensive care. [My Copy] Artif Intell Med, Vol. 19, No. 3. (July 2000), pp. 225-249. by K. Morik, M. Imhoff, P. Brockhausen, T. Joachims, U. Gather, M. Imboff posted to validation classification algorithm proj_disocons by chad_davis on 2007-01-25 19:38:46 as
	ROC with confidence - a Perl program for receiver operator characteristic curves. [My Copy] Comput Methods Programs Biomed, Vol. 64, No. 2. (February 2001), pp. 133-136. by H. A. Kestler posted to statistics toolkit proj_disocons by chad_davis on 2007-01-24 17:22:38 as
	Predicting the insurgence of human genetic diseases associated to single point protein mutations with support vector machines and evolutionary information. [My Copy] Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2729-2734. by E. Capriotti, R. Calabrese, R. Casadio posted to proj_disocons by chad_davis on 2007-01-10 09:17:13 as along with 3 people and 1 group daforerog kevinemamy ramensky clab
	PHD -- an automatic mail server for protein secondary structure prediction. [My Copy] Comput Appl Biosci, Vol. 10, No. 1. (February 1994), pp. 53-60. by B. Rost, C. Sander, R. Schneider posted to classic classification structure proj_disocons service by chad_davis on 2007-01-09 14:19:05 as along with 2 people j3xucite dgront
	Protein secondary structure prediction based on position-specific scoring matrices. [My Copy] Journal of molecular biology, Vol. 292, No. 2. (17 September 1999), pp. 195-202. by D. T. Jones posted to classic classification structure proj_disocons by chad_davis on 2007-01-08 13:56:07 as along with 11 people rpetrenko kgutwin pjcite wouterboomsma j3xucite dgront rabio rph dandaman saunders granujilla
	Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features [My Copy] Biopolymers, Vol. 22, No. 12. (December 1983), pp. 2577-2637. by W. Kabsch, C. Sander posted to classic structure proj_disocons by chad_davis on 2007-01-08 09:24:38 as along with 33 people dfdong barmak7282 Vadikus j3xucite scampos TLVincent maria_hauser pablocarb rpetrenko carlosjavierna mijam wqia007 dsmueller niallhaslam saunders jwm sebk Diego_Prada pjcite kaarsinogen lna wouterboomsma penka ffranca dgront choonpeng rabio gisle medic0747 martainn chgjb mschofie marti
	Practical implementation of nonlinear time series methods: The TISEAN package. [My Copy] Chaos, Vol. 9, No. 2. (June 1999), pp. 413-435. by Rainer Hegger, Holger Kantz, Thomas Schreiber posted to algorithm toolkit proj_disocons proj_credo by chad_davis on 2007-01-01 18:12:18 as along with 1 person ocs
	Consenus Disorder Prediction [My Copy] (2005) by Burnham posted to classification disorder proj_disocons by chad_davis on 2006-12-31 14:55:18 as
	Coupling of folding and binding for unstructured proteins. [My Copy] Curr Opin Struct Biol, Vol. 12, No. 1. (February 2002), pp. 54-60. by H. J. Dyson, P. E. Wright posted to disorder proj_disocons binding by chad_davis on 2006-12-24 09:30:38 as along with 2 people allmensch cactus
	Bioinformatics for Geneticists [My Copy] In Bioinformatics for Geneticists (2003) by M. J. Betts, R. B. Russell edited by M. R. Barnes, I. C. Gray posted to chemistry classic embl review structure proj_disocons by chad_davis on 2006-12-23 15:59:10 as
	Phospho.ELM: a database of experimentally verified phosphorylation sites in eukaryotic proteins. [My Copy] BMC Bioinformatics, Vol. 5 (22 June 2004) by F. Diella, S. Cameron, C. Gemuend, et al.R. Linding, A. Via, B. Kuster, Sicheritz T. Ponten, N. Blom, T. J. Gibson posted to chemistry database embl proj_disocons by chad_davis on 2006-12-23 12:13:07 as along with 2 people renatomilani Evangelia
	ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins. [My Copy] Nucleic acids research, Vol. 31, No. 13. (1 July 2003), pp. 3625-3630. by P. Puntervoll, R. Linding, C. Gemuend, et al.Chabanis S. Davidson, M. Mattingsdal, S. Cameron, D. M. Martin, G. Ausiello, B. Brannetti, A. Costantini, F. Ferre, V. Maselli, A. Via, G. Cesareni, F. Diella, Superti G. Furga, L. Wyrwicz, C. Ramu, C. Mcguigan, R. Gudavalli, I. Letunic, P. Bork, L. Rychlewski, B. Kuester, Helmer M. Citterich, W. N. Hunter, R. Aasland, T. J. Gibson posted to embl proj_disocons by chad_davis on 2006-12-22 18:54:22 as along with 3 people chica phoenixzxl Evangelia
	Mapping OMIM mutations to SwissProt [My Copy] Bioinformatics (2006) by Andrew C. R. Martin posted to database data_integration proj_disocons by chad_davis on 2006-12-20 13:18:47 as
	FoldUnfold: web server for the prediction of disordered regions in protein chain [My Copy] Bioinformatics, Vol. 22, No. 23. (1 December 2006), pp. 2948-2949. by Oxana V. Galzitskaya, Sergiy O. Garbuzynskiy, Michail Y. Lobanov posted to classification disorder proj_disocons by chad_davis on 2006-11-18 21:05:37 as along with 1 person bobychan
	A simple method for displaying the hydropathic character of a protein. [My Copy] Journal of molecular biology, Vol. 157, No. 1. (5 May 1982), pp. 105-132. by J. Kyte, R. F. Doolittle posted to classic structure algorithm proj_disocons by chad_davis on 2006-11-12 08:51:58 as along with 8 people barmak7282 hryk thaliana dgront medic0747 ashaytan Ema bicko
	Towards a structural basis of human non-synonymous single nucleotide polymorphisms. [My Copy] Trends Genet, Vol. 16, No. 5. (May 2000), pp. 198-200. by S. Sunyaev, V. Ramensky, P. Bork posted to disease structure proj_disocons by chad_davis on 2006-11-11 17:27:58 as along with 2 people and 1 group massivemayhem cat_worth structural_bioinformatics
	Comparing and Combining Predictors of Mostly Disordered Proteins† [My Copy] Biochemistry, Vol. 44, No. 6. (1 February 2005), pp. 1989-2000. by C. J. Oldfield, Y. Cheng, M. S. Cortese, C. J. Brown, V. N. Uversky, A. K. Dunker posted to classification disorder proj_disocons by chad_davis on 2006-11-07 13:45:30 as along with 2 people carlosjavierna paulschlesinger
	Assessing the accuracy of prediction algorithms for classification: an overview [My Copy] Bioinformatics, Vol. 16, No. 5. (1 May 2000), pp. 412-424. by Pierre Baldi, Soren Brunak, Yves Chauvin, Claus A. Andersen, Henrik Nielsen posted to classic classification review statistics validation proj_disocons proj_bachelor proj_stabperf by chad_davis on 2006-11-03 13:46:21 as along with 10 people and 1 group waghsk ucbcjbm MarcoAlvarez ihaque eckart_bindewald skrofej girschick Evangelia wenhan sconlan MuraLab
	Predicting the functional consequences of non-synonymous single nucleotide polymorphisms: structure-based assessment of amino acid variation. [My Copy] J Mol Biol, Vol. 307, No. 2. (23 March 2001), pp. 683-706. by D. Chasman, R. M. Adams posted to structure proj_disocons by chad_davis on 2006-11-03 09:43:58 as along with 2 people and 1 group chrn caporaso biomedical-nlp
	The role of domain redundancy in genetic robustness against null mutations [My Copy] Journal of Molecular Biology, Vol. In Press, Accepted Manuscript (2006) by Sophie Pasek, Jean L. Risler, Pierre Brezellec posted to proj_disocons by chad_davis on 2006-11-03 09:26:22 as
	20S proteasomes and protein degradation "by default". [My Copy] Bioessays, Vol. 28, No. 8. (August 2006), pp. 844-849. by G. Asher, N. Reuven, Y. Shaul posted to review proj_disocons by chad_davis on 2006-11-02 18:32:22 as along with 2 people and 2 groups guhjy sangeetha Bioinformatics insilicodrug
	Point Mutations in Protein Globular Domains: Contributions from Function, Stability and Misfolding [My Copy] Journal of Molecular Biology, Vol. 363, No. 2. (20 October 2006), pp. 422-432. by I. E. Sanchez, J. Tejero, Gomez C. Moreno, M. Medina, L. Serrano posted to embl structure proj_disocons by chad_davis on 2006-11-02 17:55:55 as along with 2 people and 2 groups barry cat_worth structural_bioinformatics Bioinformatics
	A practical overview of protein disorder prediction methods. [My Copy] Proteins, Vol. 65, No. 1. (19 July 2006), pp. 1-14. by François Ferron, Sonia Longhi, Bruno Canard, David Karlin posted to disorder review structure proj_disocons by chad_davis on 2006-08-21 07:42:41 as
	SNPeffect v2.0: a new step in investigating the molecular phenotypic effects of human non synonymous SNPs. [My Copy] Bioinformatics (29 June 2006) by Joke Reumers, Sebastian M. Stroh, Joost Schymkowitz, Frederic Rousseau posted to disease database proj_disocons by chad_davis on 2006-08-19 09:28:14 as along with 4 people and 3 groups caporaso massivemayhem cat_worth skoddet structural_bioinformatics biomedical-nlp Nielsen group
	Accurate Prediction of Protein Disordered Regions by Mining Protein Structure Data [My Copy] Data Mining and Knowledge Discovery, Vol. 11, No. 3. (November 2005), pp. 213-222. by Jianlin Cheng, Michael Sweredoski, Pierre Baldi posted to disorder proj_disocons by chad_davis on 2006-08-14 14:49:54 as
	ProDDO: a database of disordered proteins from the Protein Data Bank (PDB) [My Copy] Bioinformatics, Vol. 17, No. 4. (1 April 2001), pp. 379-380. by Kim L. Sim, Tomoyuki Uchida, Satoru Miyano posted to disorder database proj_disocons by chad_davis on 2006-08-14 14:21:03 as
	Evolutionary rate heterogeneity in proteins with long disordered regions. [My Copy] J Mol Evol, Vol. 55, No. 1. (July 2002), pp. 104-110. by C. J. Brown, S. Takayama, A. M. Campen, et al.P. Vise, T. W. Marshall, C. J. Oldfield, C. J. Williams, A. K. Dunker posted to disorder evolution structure proj_disocons by chad_davis on 2006-08-14 13:52:48 as along with 1 person mgomes
	Methods for improving protein disorder prediction [My Copy] Neural Networks In IJCNN '01, International Joint Conference on Neural Networks Proceedings, Vol. 4 (2001), pp. 2718-2723 vol.4. by S. Vucetic, P. Radivojac, Z. Obradovic, C. J. Brown, A. K. Dunker posted to disorder proj_disocons by chad_davis on 2006-08-14 13:43:20 as along with 2 people carlosjavierna niallhaslam
	Simple sequences are rare in the Protein Data Bank. [My Copy] Proteins, Vol. 48, No. 1. (1 July 2002), pp. 134-140. by M. A. Huntley, G. B. Golding posted to disorder structure database proj_disocons by chad_davis on 2006-07-22 17:40:14 as
	Showing your ID: intrinsic disorder as an ID for recognition, regulation and cell signaling. [My Copy] J Mol Recognit, Vol. 18, No. 5. (t 2005), pp. 343-384. by V. N. Uversky, C. J. Oldfield, A. K. Dunker posted to disorder gene_regulation proj_disocons review by chad_davis on 2006-07-22 17:38:44 as along with 1 person Evangelia
	Conservation of intrinsic disorder in protein domains and families: II. functions of conserved disorder. [My Copy] J Proteome Res, Vol. 5, No. 4. (April 2006), pp. 888-898. by J. W. Chen, P. Romero, V. N. Uversky, A. K. Dunker posted to disorder proj_disocons by chad_davis on 2006-07-22 17:29:05 as
	Conservation of intrinsic disorder in protein domains and families: I. A database of conserved predicted disordered regions. [My Copy] J Proteome Res, Vol. 5, No. 4. (April 2006), pp. 879-887. by J. W. Chen, P. Romero, V. N. Uversky, A. K. Dunker posted to disorder database proj_disocons by chad_davis on 2006-07-22 17:26:36 as
	Analysis of ordered and disordered protein complexes reveals structural features discriminating between stable and unstable monomers. [My Copy] Journal of molecular biology, Vol. 341, No. 5. (27 August 2004), pp. 1327-1341. by K. Gunasekaran, C. J. Tsai, R. Nussinov posted to disorder structure proj_disocons binding by chad_davis on 2006-07-22 11:28:24 as along with 2 people allmensch marti
	RONN: the bio-basis function neural network technique applied to the detection of natively disordered regions in proteins. [My Copy] Bioinformatics, Vol. 21, No. 16. (15 August 2005), pp. 3369-3376. by Z. R. Yang, R. Thomson, P. Mcneil, R. M. Esnouf posted to disorder download proj_disocons by chad_davis on 2006-07-22 11:23:46 as

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structure	236
binding	152
algorithm	136
review	112
embl	98
proj_disocons	82
database	81
complexes	80
classic	79
classification	79
proj_assembly	66
evolution	64
statistics	64
networks	58
disorder	53
modelling	49
service	46
feature_selection	44
ppi	42
proj_credo	40
data_integration	36
download	36
gene_regulation	30
yeast	29
annotation	28
proj_interprets	27
toolkit	25
validation	24
clustering	22
experimental	20
alignment	19
microarray	18
disease	16
chemistry	15
non-redundant	12
proj_stabperf	11
ensemble	10
data_mining	9
mpi	9
docking	8
drug	7
proj_cct	6
proj_bachelor	4
distributed	3

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