chad_davis's structure [at least 200 articles] Export

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	ProtorP: A Protein-Protein Interaction Analysis Server [My Copy] Bioinformatics (11 November 2008), btn584. by Christopher Reynolds, David Damerell, Susan Jones posted to annotation binding proj_assembly proj_interprets service structure by chad_davis on 2009-01-31 18:25:28 as along with 7 people and 1 group idoerg bicko barry behindtherabbit neils kshameer hugowill structural_bioinformatics
	HADDOCK versus HADDOCK: new features and performance of HADDOCK2.0 on the CAPRI targets. [My Copy] Proteins, Vol. 69, No. 4. (1 December 2007), pp. 726-733. by S. J. de Vries, A. D. van Dijk, M. Krzeminski, et al.M. van Dijk, A. Thureau, V. Hsu, T. Wassenaar, A. M. Bonvin posted to algorithm binding complexes docking download modelling ppi proj_assembly structure by chad_davis on 2009-01-14 13:39:14 as along with 1 person martainn
	HADDOCK: A Protein−Protein Docking Approach Based on Biochemical or Biophysical Information [My Copy] Journal of the American Chemical Society, Vol. 125, No. 7. (1 February 2003), pp. 1731-1737. by Cyril Dominguez, Rolf Boelens, Alexandre M. J. J. Bonvin posted to algorithm binding complexes docking download modelling ppi proj_assembly proj_interprets structure by chad_davis on 2009-01-14 13:34:03 as along with 10 people bmduggan laurabailey A_Coletta_Thesis betainverse dgruiz bicko bluvsh1 gloria ruvido yalexeev
	Multiple Alignment of protein structures and sequences for VMD. [My Copy] Bioinformatics (8 December 2005) by John Eargle, Dan Wright, Zaida Luthey-Schulten posted to alignment download structure by chad_davis on 2008-12-29 16:25:02 as along with 2 people BragilMassoud kaarsinogen
	The meaning of alignment: lessons from structural diversity [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Walter Pirovano, Anton K. Feenstra, Jaap Heringa posted to alignment evolution structure validation by chad_davis on 2008-12-27 18:35:07 as along with 13 people pimmy swtimmer dimka mhamada reyez treangen markusd j3xucite nuin kshameer druvus taguchi pansapiens
	An evolutionary and structural characterization of mammalian protein complex organization. [My Copy] BMC genomics, Vol. 9, No. 1. (23 December 2008) by Philip Wong, Sonja Althammer, Andrea Hildebrand, et al.Andreas Kirschner, Philipp Pagel, Bernd Geissler, Pawel Smialowski, Florian Blöchl, Matthias Oesterheld, Thorsten Schmidt, Normann Strack, Fabian J. Theis, Andreas Ruepp, Dmitrij Frishman posted to complexes evolution ppi proj_assembly structure by chad_davis on 2008-12-26 21:54:40 as along with 3 people chica zwang phoenixzxl
	Malleable machines in transcription regulation: the mediator complex. [My Copy] PLoS computational biology, Vol. 4, No. 12. (December 2008) by A. Tóth-Petróczy, C. J. Oldfield, I. Simon, et al.Y. Takagi, A. K. Dunker, V. N. Uversky, M. Fuxreiter posted to binding complexes disorder ppi proj_assembly proj_disocons structure by chad_davis on 2008-12-26 21:41:43 as along with 2 people siebert akraemer
	Association rate constants of ras-effector interactions are evolutionarily conserved. [My Copy] PLoS computational biology, Vol. 4, No. 12. (December 2008) by C. Kiel, D. Aydin, L. Serrano posted to binding complexes embl evolution ppi structure by chad_davis on 2008-12-26 21:31:29 as along with 2 people barry ras
	The archaeal exosome core is a hexameric ring structure with three catalytic subunits [My Copy] Nature Structural & Molecular Biology, Vol. 12, No. 7. (12 June 2005), pp. 575-581. by Esben Lorentzen, Pamela Walter, Sebastien Fribourg, Elena Evguenieva-Hackenberg, Gabriele Klug, Elena Conti posted to classic complexes embl evolution experimental proj_assembly structure by chad_davis on 2008-12-22 13:11:34 as
	A dataset of protein-protein interfaces generated with a sequence-order-independent comparison technique. [My Copy] J Mol Biol, Vol. 260, No. 4. (26 July 1996), pp. 604-620. by C. J. Tsai, S. L. Lin, H. J. Wolfson, R. Nussinov posted to algorithm binding classic complexes database non-redundant ppi proj_assembly proj_interprets statistics structure by chad_davis on 2008-12-18 22:10:13 as along with 1 person bicko
	Residue contact-count potentials are as effective as residue-residue contact-type potentials for ranking protein decoys. [My Copy] BMC structural biology, Vol. 8 (08 December 2008), 53. by Dan M. Bolser, Ioannis Filippis, Henning Stehr, Jose Duarte, Michael Lappe posted to algorithm binding feature_selection ppi proj_interprets statistics structure validation by chad_davis on 2008-12-18 20:51:09 as along with 3 people tcschen RamuAnandakrishnan krapnik
	The self-assembly and evolution of homomeric protein complexes [My Copy] (22 Nov 2008) by Gabriel Villar, Alex W. Wilber, Alex J. Williamson, et al.Parvinder Thiara, Jonathan P. K. Doye, Ard A. Louis, Mara N. Jochum, Anna C. F. Lewis, Emmanuel D. Levy posted to binding complexes evolution modelling ppi proj_assembly structure by chad_davis on 2008-12-18 20:23:39 as
	The Rough Guide to In Silico Function Prediction, or How To Use Sequence and Structure Information To Predict Protein Function [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (31 October 2008), e1000160. by Marco Punta, Yanay Ofran posted to algorithm annotation classification feature_selection review structure by chad_davis on 2008-11-03 08:17:22 as along with 18 people and 1 group kiekyon Thaverkamp niallhaslam daforerog Zalanszabo bpcusack Katje joseph_x_zhou taguchi sjcockell markchen ptrobajo druvus mdstobbe giovenko nilanjanroy reyez GeeSharpMinor microbiology_nijmegen
	MODBASE, a database of annotated comparative protein structure models and associated resources. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (23 January 2009) by Ursula Pieper, Narayanan Eswar, Ben M. Webb, et al.David Eramian, Libusha Kelly, David T. Barkan, Hannah Carter, Parminder Mankoo, Rachel Karchin, Marc A. Marti-Renom, Fred P. Davis, Andrej Sali posted to classic complexes database modelling ppi proj_assembly service structure by chad_davis on 2008-10-27 12:47:02 as along with 3 people tjimenez noraziz medic0747
	Inferring protein domain interactions from databases of interacting proteins. [My Copy] Genome Biol, Vol. 6, No. 10. (2005) by R. Riley, C. Lee, C. Sabatti, D. Eisenberg posted to algorithm binding ppi proj_assembly proj_interprets statistics structure validation by chad_davis on 2008-10-20 12:49:20 as along with 4 people maryee j3xucite iris_2001 phoenixzxl
	An integrative approach for predicting interactions of protein regions. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008) by Sven-Eric E. Schelhorn, Thomas Lengauer, Mario Albrecht posted to algorithm binding complexes ppi proj_assembly proj_interprets structure by chad_davis on 2008-10-16 13:59:56 as along with 1 person kgutwin
	Assembly reflects evolution of protein complexes. [My Copy] Nature, Vol. 453, No. 7199. (26 June 2008), pp. 1262-1265. by Emmanuel D. Levy, Elisabetta B. Erba, Carol V. Robinson, Sarah A. Teichmann posted to complexes evolution experimental ppi proj_assembly structure by chad_davis on 2008-10-14 14:51:52 as along with 11 people and 1 group robfsouza chica noraziz psique marck paulschlesinger neils jwm zwang faion phoenixzxl KeatingJClub
	The unfoldomics decade: an update on intrinsically disordered proteins. [My Copy] BMC genomics, Vol. 9 Suppl 2 (2008) by A. K. Dunker, C. J. Oldfield, J. Meng, et al.P. Romero, J. Y. Yang, J. W. Chen, V. Vacic, Z. Obradovic, V. N. Uversky posted to binding disorder ppi proj_disocons review structure by chad_davis on 2008-10-10 17:17:41 as along with 6 people kiekyon niallhaslam robfsouza carlosjavierna guhjy higueruelo
	Homology modelling of protein-protein complexes: a simple method and its possibilities and limitations [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Guillaume Launay, Thomas Simonson posted to algorithm binding complexes modelling proj_assembly structure by chad_davis on 2008-10-10 07:36:29 as along with 1 person lptolik
	Optimal contact map alignment of protein-protein interfaces. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 20. (15 October 2008), pp. 2324-2328. by V. Pulim, B. Berger, J. Bienkowska posted to algorithm alignment binding complexes ppi proj_interprets structure by chad_davis on 2008-10-09 18:28:32 as along with 1 person i000
	Progress and challenges in protein structure prediction [My Copy] Current Opinion in Structural Biology In Nucleic acids / Sequences and topology, Vol. 18, No. 3. (June 2008), pp. 342-348. by Yang Zhang posted to modelling review structure by chad_davis on 2008-10-09 18:03:26 as along with 10 people ameetsoni rodrigofaccioli jperkins newton1234 hadesnumb kgutwin barry phoenixzxl marck zwang
	Structure-Guided Comparative Analysis of Proteins: Principles, Tools, and Applications for Predicting Function [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000151. by Raja Mazumder, Sona Vasudevan posted to annotation review structure by chad_davis on 2008-10-09 17:31:00 as along with 9 people and 2 groups i000 pengchy raik zwang druvus reyez mdstobbe barry jameswasmuth structural_bioinformatics Bioinformatics
	Protein Structure Fitting and Refinement Guided by Cryo-EM Density [My Copy] Structure, Vol. 16, No. 2. (12 February 2008), pp. 295-307. by Maya Topf, Keren Lasker, Ben Webb, Haim Wolfson, Wah Chiu, Andrej Sali posted to algorithm complexes data_integration modelling proj_assembly structure by chad_davis on 2008-10-08 16:10:16 as along with 1 person and 1 group noraziz KeatingJClub
	Structural characterization of assemblies from overall shape and subcomplex compositions. [My Copy] Structure, Vol. 13, No. 3. (March 2005), pp. 435-445. by F. Alber, M. F. Kim, A. Sali posted to algorithm binding complexes data_integration modelling ppi proj_assembly structure by chad_davis on 2008-10-08 15:51:24 as along with 1 person faion
	PRISM: protein interactions by structural matching. [My Copy] Nucleic acids research, Vol. 33, No. Web Server issue. (1 July 2005) by U. Ogmen, O. Keskin, A. S. Aytuna, R. Nussinov, A. Gursoy posted to algorithm binding ppi proj_assembly proj_interprets structure service by chad_davis on 2008-10-07 10:15:00 as along with 4 people apaydin bicko j3xucite henschel
	In different organisms, the mode of interaction between two signaling proteins is not necessarily conserved. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 32. (10 August 2004), pp. 11646-11651. by S. Y. Park, B. D. Beel, M. I. Simon, A. M. Bilwes, B. R. Crane posted to binding evolution proj_interprets structure validation by chad_davis on 2008-09-17 16:56:13 as along with 3 people chica bicko RebeccaHamer
	Analyzing Protein Interaction Networks Using Structural Information [My Copy] Annual Review of Biochemistry, Vol. 77, No. 1. (2008) by Christina Kiel, Pedro Beltrao, Luis Serrano posted to data_integration embl networks ppi proj_assembly proj_interprets review structure by chad_davis on 2008-09-17 16:51:18 as along with 11 people and 1 group msuarezdiez flbarroso kshameer Borelli bicko neils Evangelia grahamc paolomarcatili phoenixzxl zwang structural_bioinformatics
	Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by Andrew Bordner, Andrey Gorin posted to annotation binding clustering database non-redundant proj_assembly proj_interprets structure service by chad_davis on 2008-09-16 10:09:39 as along with 6 people somak bicko robfsouza guhjy neils phoenixzxl
	United we stand: combining structural methods [My Copy] Current Opinion in Structural Biology, Vol. In Press, Corrected Proof by Nathan P. Cowieson, Bostjan Kobe, Jennifer L. Martin posted to complexes data_integration proj_assembly review structure by chad_davis on 2008-09-13 10:54:58 as along with 2 people dgront paulschlesinger
	Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structures. [My Copy] BMC Bioinformatics, Vol. 5 (9 January 2004) by V. Alexandrov, M. Gerstein posted to algorithm alignment download structure by chad_davis on 2008-08-29 22:01:20 as along with 1 person Evangelia
	DAPID: a 3D-domain annotated protein-protein interaction database. [My Copy] Genome informatics. International Conference on Genome Informatics, Vol. 17, No. 2. (2006), pp. 206-215. by Y. C. Chen, H. C. Chen, J. M. Yang posted to database ppi proj_assembly proj_interprets service structure by chad_davis on 2008-08-26 18:18:15 as along with 1 person bicko
	PPiClust: EFFICIENT CLUSTERING OF 3D PROTEIN-PROTEIN INTERACTION INTERFACES. [My Copy] Journal of bioinformatics and computational biology, Vol. 6, No. 3. (June 2008), pp. 415-433. by Z. Aung, S. H. Tan, S. K. Ng, K. L. Tan posted to algorithm clustering ppi proj_assembly proj_interprets structure by chad_davis on 2008-08-26 18:15:46 as along with 1 person bicko
	HOMCOS: a server to predict interacting protein pairs and interacting sites by homology modeling of complex structures. [My Copy] Nucleic acids research, Vol. 36, No. Web Server issue. (1 July 2008) by N. Fukuhara, T. Kawabata posted to binding algorithm complexes modelling proj_assembly structure service by chad_davis on 2008-08-21 16:31:17 as along with 2 people bicko guhjy
	PDBML: the representation of archival macromolecular structure data in XML [My Copy] Bioinformatics, Vol. 21, No. 7. (1 April 2005), pp. 988-992. by Westbrook John, Ito Nobutoshi, Nakamura Haruki, Henrick Kim, M. Berman posted to database download structure toolkit by chad_davis on 2008-08-11 13:30:08 as along with 3 people and 1 group walshtp neils sobolevnrm baker-group
	Energetics of protein-protein interactions: analysis of the barnase-barstar interface by single mutations and double mutant cycles. [My Copy] Journal of molecular biology, Vol. 248, No. 2. (28 April 1995), pp. 478-486. by G. Schreiber, A. R. Fersht posted to chemistry classic complexes experimental proj_interprets structure binding by chad_davis on 2008-08-08 17:25:37 as along with 1 person bicko
	Protein Complex Evolution Does Not Involve Extensive Network Rewiring [My Copy] PLoS Comput Biol, Vol. 4, No. 7. (25 July 2008), e1000132. by Teunis J. van Dam, Berend Snel posted to complexes evolution proj_assembly structure by chad_davis on 2008-08-07 15:58:06 as along with 4 people zufar noraziz phoenixzxl cabbagesofdoom
	From the first protein structures to our current knowledge of protein folding: delights and scepticisms. [My Copy] Nature reviews. Molecular cell biology (25 June 2008) by Alan R. R. Fersht posted to disorder experimental modelling review structure by chad_davis on 2008-08-06 16:18:41 as along with 4 people aalibes dullhunk paulschlesinger melting
	ProCope - Protein Complex Prediction and Evaluation [My Copy] Bioinformatics (17 July 2008), btn376. by Jan Krumsiek, Caroline C. Friedel, Ralf Zimmer posted to algorithm complexes data_integration proj_assembly structure toolkit service by chad_davis on 2008-08-03 22:03:17 as along with 4 people carlk saket zwang guhjy
	Understanding and Predicting Protein Assemblies With 3D Structures. [My Copy] Comparative and functional genomics, Vol. 4, No. 4. (2003), pp. 410-415. by P. Aloy, R. B. Russell posted to algorithm classic complexes data_integration embl modelling proj_assembly structure binding by chad_davis on 2008-08-03 18:17:16 as
	MSDmotif: exploring protein sites and motifs [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 312. by Adel Golovin, Kim Henrick posted to algorithm complexes database data_integration drug embl structure binding service by chad_davis on 2008-07-17 16:18:19 as along with 6 people pansapiens HawkinsJohnC tjimenez reyez massivemayhem Evangelia
	Peptide-mediated interactions in biological systems: new discoveries and applications. [My Copy] Current opinion in biotechnology (1 July 2008) by Evangelia Petsalaki, Robert B. B. Russell posted to embl review structure binding by chad_davis on 2008-07-14 12:54:41 as along with 2 people zdai jteyra
	Inference of macromolecular assemblies from crystalline state. [My Copy] Journal of molecular biology, Vol. 372, No. 3. (21 September 2007), pp. 774-797. by E. Krissinel, K. Henrick posted to algorithm annotation complexes database embl proj_assembly structure validation binding service by chad_davis on 2008-07-13 16:28:44 as along with 3 people marti rico bicko
	Exploring the structure and function paradigm [My Copy] Current Opinion in Structural Biology In Nucleic acids / Sequences and topology, Vol. 18, No. 3. (June 2008), pp. 394-402. by Oliver C. Redfern, Benoit Dessailly, Christine A. Orengo posted to algorithm annotation classification evolution review structure by chad_davis on 2008-07-09 14:50:49 as along with 7 people and 1 group yylin bdessailly robfsouza guhjy paulschlesinger marck janasont Orengo Group Journal Picks
	Tubulin and FtsZ structures: functional and therapeutic implications. [My Copy] BioEssays : news and reviews in molecular, cellular and developmental biology, Vol. 20, No. 7. (July 1998), pp. 523-527. by A. Desai, T. J. Mitchison posted to disease drug evolution review structure by chad_davis on 2008-07-08 13:34:13 as
	Bacterial cell division protein FtsZ assembles into protofilament sheets and minirings, structural homologs of tubulin polymers. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 93, No. 1. (9 January 1996), pp. 519-523. by H. P. Erickson, D. W. Taylor, K. A. Taylor, D. Bramhill posted to complexes proj_assembly structure binding by chad_davis on 2008-07-07 16:07:55 as
	Statistical Analysis of Interface Similarity in Crystals of Homologous Proteins. [My Copy] Journal of molecular biology (7 June 2008) by Qifang Xu, Adrian A. A. Canutescu, Guoli Wang, Maxim Shapovalov, Zoran Obradovic, Roland L. L. Dunbrack posted to complexes database data_integration evolution proj_interprets structure validation binding by chad_davis on 2008-07-06 20:22:42 as along with 4 people robfsouza svozil kintoki bicko
	Designing succinct structural alphabets [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i182-189. by Shuai C. Li, Dongbo Bu, Xin Gao, Jinbo Xu, Ming Li posted to algorithm alignment annotation chemistry feature_selection proj_assembly structure by chad_davis on 2008-07-05 16:11:37 as along with 1 person marck
	PSIbase: a database of Protein Structural Interactome map (PSIMAP) [My Copy] Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2541-2543. by Sungsam Gong, Giseok Yoon, Insoo Jang, et al.Dan Bolser, Panos Dafas, Michael Schroeder, Hansol Choi, Yoobok Cho, Kyungsook Han, Sunghoon Lee, Hwanho Choi, Michael Lappe, Liisa Holm, Sangsoo Kim, Donghoon Oh, Jonghwa Bhak posted to algorithm database proj_assembly structure binding service by chad_davis on 2008-07-01 14:43:04 as along with 1 person medic0747
	The role of disorder in interaction networks: a structural analysis [My Copy] Molecular Systems Biology, Vol. 4 (25 March 2008) by Philip M. Kim, Andrea Sboner, Yu Xia, Mark Gerstein posted to disorder networks proj_disocons structure yeast binding by chad_davis on 2008-06-30 10:59:42 as along with 7 people mgomes pablocarb zwang bootsy biomcgary maralena phoenixzxl
	Homology-based modeling of 3D structures of protein-protein complexes using alignments of modified sequence profiles. [My Copy] International journal of biological macromolecules (21 May 2008) by Petras J. J. Kundrotas, Marc F. F. Lensink, Emil Alexov posted to algorithm alignment complexes data_integration modelling proj_assembly structure binding by chad_davis on 2008-06-29 11:15:36 as along with 1 group structural_bioinformatics

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structure	236
binding	152
algorithm	136
review	112
embl	98
proj_disocons	82
database	81
complexes	80
classic	79
classification	79
proj_assembly	66
evolution	64
statistics	64
networks	58
disorder	53
modelling	49
service	46
feature_selection	44
ppi	42
proj_credo	40
data_integration	36
download	36
gene_regulation	30
yeast	29
annotation	28
proj_interprets	27
toolkit	25
validation	24
clustering	22
experimental	20
alignment	19
microarray	18
disease	16
chemistry	15
non-redundant	12
proj_stabperf	11
ensemble	10
data_mining	9
mpi	9
docking	8
drug	7
proj_cct	6
proj_bachelor	4
distributed	3

chad_davis's structure [at least 200 articles] Export

chad_davis's tags