chad_davis's toolkit [25 articles] Export

Recent papers added to chad_davis's library classified by the tag toolkit. You can also see everyone's toolkit.

	R/parallel - speeding up bioinformatics analysis with R [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (22 September 2008), 390. by Gonzalo Vera, Ritsert C. Jansen, Remo L. Suppi posted to algorithm distributed download proj_stabperf toolkit by chad_davis on 2008-10-09 15:13:43 as along with 26 people and 1 group Zephyrus daveGerrard sotacam cassj walshtp dposada jfr Yanno siebert operon talponer guhjy dakelley ptrobajo pengchy shikin robertlischke chrisamiller cisevol druvus renatomilani rdiaz nuin GeeSharpMinor neils jandot BergmanLab
	An efficient algorithm for large-scale detection of protein families [My Copy] Nucl. Acids Res., Vol. 30, No. 7. (1 April 2002), pp. 1575-1584. by A. J. Enright, S. Van Dongen, C. A. Ouzounis posted to algorithm clustering download networks proj_assembly toolkit by chad_davis on 2008-10-08 12:48:58 as along with 22 people and 2 groups jperkins calderonv nedwards dakelley druvus treangen carlk cgaugain johanviklund camster operon knaseanka indigoviolet skhadar nirfriedman dgront entropy gcalda GustavoLacerda hpaces RebeccaHamer Borelli dbk-lab EisenLab
	PDBML: the representation of archival macromolecular structure data in XML [My Copy] Bioinformatics, Vol. 21, No. 7. (1 April 2005), pp. 988-992. by Westbrook John, Ito Nobutoshi, Nakamura Haruki, Henrick Kim, M. Berman posted to database download structure toolkit by chad_davis on 2008-08-11 13:30:08 as along with 3 people and 1 group walshtp neils sobolevnrm baker-group
	ProCope - Protein Complex Prediction and Evaluation [My Copy] Bioinformatics (17 July 2008), btn376. by Jan Krumsiek, Caroline C. Friedel, Ralf Zimmer posted to algorithm complexes data_integration proj_assembly structure toolkit service by chad_davis on 2008-08-03 22:03:17 as along with 4 people carlk saket zwang guhjy
	Open source clustering software. [My Copy] Bioinformatics (Oxford, England), Vol. 20, No. 9. (12 June 2004), pp. 1453-1454. by M. J. de Hoon, S. Imoto, J. Nolan, S. Miyano posted to algorithm clustering download toolkit by chad_davis on 2008-07-04 09:28:18 as along with 25 people and 7 groups dakelley rabio klexa oteri arlam ilyashl matterhorn cswinburne mtagaya macowell davidbroadhurst eme oilcan rahul Ayest balajis piscinero metamerist digisoki wnpx rafamayo atopcu ccr calu karlmicha Structural Biology Group TorVergata Fluid-Mechanics-and-Thermal-Science-Research astro SRL Computational_Systems_Biology XMLDataManagement BUiGEM
	ROCR: visualizing classifier performance in R [My Copy] Bioinformatics, Vol. 21, No. 20. (15 October 2005), pp. 3940-3941. by Tobias Sing, Oliver Sander, Niko Beerenwinkel, Thomas Lengauer posted to classification download proj_stabperf statistics toolkit by chad_davis on 2008-05-25 13:58:18 as along with 4 people and 2 groups megraw ana balajis baldigroup structural_bioinformatics Bioinformatics
	Utility library for structural bioinformatics [My Copy] Bioinformatics, Vol. 24, No. 4. (15 January 2008), pp. 584-585. by Dominik Gront, Andrzej Kolinski posted to structure toolkit by chad_davis on 2008-02-18 14:17:05 as along with 5 people mijam mcbla dgront rabio Minty
	The Standard Template Library [My Copy] No. X3J16/94-0095, WG21/N0482. (1995) by A. A. Stepanov, M. Lee posted to algorithm classic toolkit by chad_davis on 2008-01-23 15:00:16 as
	Automated manipulation of systems biology models using libSBML within Taverna workflows. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 2. (15 December 2008), pp. 287-289. by Peter Li, Tom Oinn, Stian Soiland, Douglas B. B. Kell posted to data_integration toolkit by chad_davis on 2008-01-15 19:23:28 as along with 11 people and 1 group pekrau leemond31 Scis0000002 pmendes druvus guhjy dullhunk fisherp bootsy dbk alanrw dbk-lab
	SeqAn an efficient, generic C++ library for sequence analysis. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by Andreas Doring, David Weese, Tobias Rausch, Knut Reinert posted to algorithm alignment toolkit by chad_davis on 2008-01-10 12:53:02 as along with 16 people aheilbut MarcelSchulz n00c druvus mmartin dquest daforerog groepl guhjy laughcry ryanraaum nklee barriot mailund magusina reyez
	EMBOSS: the European Molecular Biology Open Software Suite. [My Copy] Trends Genet, Vol. 16, No. 6. (June 2000), pp. 276-277. by P. Rice, I. Longden, A. Bleasby posted to classic download embl toolkit by chad_davis on 2007-04-19 14:46:41 as along with 6 people niallhaslam fhsantanna dullhunk mtagaya dgront dna
	Biskit -- a software platform for structural bioinformatics. [My Copy] Bioinformatics, Vol. 23, No. 6. (15 March 2007), pp. 769-770. by R. Gruenberg, M. Nilges, J. Leckner posted to structure toolkit by chad_davis on 2007-04-05 21:45:11 as along with 4 people and 1 group raik guhjy aalibes bicko structural_bioinformatics
	BALL -- rapid software prototyping in computational molecular biology. Biochemicals Algorithms Library. [My Copy] Bioinformatics, Vol. 16, No. 9. (September 2000), pp. 815-824. by O. Kohlbacher, H. P. Lenhof posted to algorithm structure toolkit by chad_davis on 2007-02-23 13:27:59 as along with 1 person bicko
	ROC with confidence - a Perl program for receiver operator characteristic curves. [My Copy] Comput Methods Programs Biomed, Vol. 64, No. 2. (February 2001), pp. 133-136. by H. A. Kestler posted to statistics toolkit proj_disocons by chad_davis on 2007-01-24 17:22:38 as
	Design and application of PDBlib, a C++ macromolecular class library. [My Copy] Comput Appl Biosci, Vol. 10, No. 6. (December 1994), pp. 575-586. by W. Chang, I. N. Shindyalov, C. Pu, P. E. Bourne posted to structure toolkit by chad_davis on 2007-01-23 10:54:33 as
	The Bio toolkits -- a brief overview. [My Copy] Brief Bioinform, Vol. 3, No. 3. (September 2002), pp. 296-302. by H. Mangalam posted to data_integration review toolkit by chad_davis on 2007-01-02 13:12:50 as along with 5 people csjonline moborg dullhunk noby bertelsen
	Practical implementation of nonlinear time series methods: The TISEAN package. [My Copy] Chaos, Vol. 9, No. 2. (June 1999), pp. 413-435. by Rainer Hegger, Holger Kantz, Thomas Schreiber posted to algorithm toolkit proj_disocons proj_credo by chad_davis on 2007-01-01 18:12:18 as along with 1 person ocs
	PAML: a program package for phylogenetic analysis by maximum likelihood. [My Copy] Computer applications in the biosciences : CABIOS, Vol. 13, No. 5. (October 1997), pp. 555-556. by Z. Yang posted to download proj_credo toolkit by chad_davis on 2006-10-24 07:55:44 as along with 15 people and 3 groups seb1 thegoose2 alexeid druvus jmjimenez bjorns chrn indigoviolet penka BioNica stajich pv usagi-kirin tharris skumagai EisenLab Nie Mycology
	BioShella package of tools for structural biology computations [My Copy] Bioinformatics, Vol. 22, No. 5. (1 March 2006), pp. 621-622. by Dominik Gront, Andrzej Kolinski posted to structure toolkit by chad_davis on 2006-06-23 11:41:00 as along with 5 people dimka bicko dgront rabio mijam
	Gnu Scientific Library: Reference Manual [My Copy] (01 February 2003) by Mark Galassi, Jim Davies, James Theiler, et al.Brian Gough, Gerard Jungman, Michael Booth, Fabrice Rossi posted to algorithm statistics toolkit by chad_davis on 2006-05-27 16:17:26 as along with 2 people guilhem_lavaux ctoraci
	Data Mining Using MLC++: A Machine Learning Library in C++ [My Copy] In Tools with Artificial Intelligence (1996), pp. 234-245. by Ron Kohavi, Dan Sommerfield, James Dougherty posted to algorithm classification statistics toolkit by chad_davis on 2006-05-25 12:47:53 as
	The NCBI data model. [My Copy] Methods Biochem Anal, Vol. 43 (2001), pp. 19-43. by J. M. Ostell, S. J. Wheelan, J. A. Kans posted to data_integration toolkit by chad_davis on 2006-05-20 19:10:29 as
	TFBS: Computational framework for transcription factor binding site analysis [My Copy] Bioinformatics, Vol. 18, No. 8. (1 August 2002), pp. 1135-1136. by B. Lenhard, W. W. Wasserman posted to gene_regulation toolkit proj_credo by chad_davis on 2006-05-11 18:19:21 as along with 5 people and 1 group tharris antonkratz ilyashl yas oannes C. elegans / WormBase
	The Bioperl Toolkit: Perl Modules for the Life Sciences [My Copy] Genome Res., Vol. 12, No. 10. (1 October 2002), pp. 1611-1618. by Jason E. Stajich, David Block, Kris Boulez, et al.Steven E. Brenner, Stephen A. Chervitz, Chris Dagdigian, Georg Fuellen, James G. Gilbert, Ian Korf, Hilmar Lapp, Heikki Lehvaslaiho, Chad Matsalla, Chris J. Mungall, Brian I. Osborne, Matthew R. Pocock, Peter Schattner, Martin Senger, Lincoln D. Stein, Elia Stupka, Mark D. Wilkinson, Ewan Birney posted to toolkit by chad_davis on 2006-03-29 17:32:39 as along with 26 people and 2 groups ludaesch jsatkosk kiekyon Thaverkamp Cortel brdwilde daforerog GustavoLacerda krapnik jmeppley rvosa indigoviolet skhadar dullhunk dgront stajich noby incovoma glycine tyrosine threonine valine nklee hpaces sekmi ninch EisenLab FAB-lab
	LIBSVM: a Library for Support Vector Machines [My Copy] (2001) by Chih C. Chang, Chih J. Lin posted to classic classification download toolkit by chad_davis on 2005-11-24 17:42:01 as along with 11 people and 1 group tlow filippone shrikondra gyuli kaarsinogen grzegorz craigtalbert zoop bundschu doubleshow vlachmore generif_paper

Note: You may cite this page as: http://www.citeulike.org/user/chad_davis/tag/toolkit

structure	236
binding	152
algorithm	136
review	112
embl	98
proj_disocons	82
database	81
complexes	80
classic	79
classification	79
proj_assembly	66
evolution	64
statistics	64
networks	58
disorder	53
modelling	49
service	46
feature_selection	44
ppi	42
proj_credo	40
data_integration	36
download	36
gene_regulation	30
yeast	29
annotation	28
proj_interprets	27
toolkit	25
validation	24
clustering	22
experimental	20
alignment	19
microarray	18
disease	16
chemistry	15
non-redundant	12
proj_stabperf	11
ensemble	10
data_mining	9
mpi	9
docking	8
drug	7
proj_cct	6
proj_bachelor	4
distributed	3

chad_davis's toolkit [25 articles] Export

chad_davis's tags