chica's coevolution [24 articles] Export Sort

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	Prediction of protein-protein interactions: a study of the co-evolution model. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 541 (2009), pp. 61-88. by Itai Sharon, Jason V. Davis, Golan Yona posted to interaction_prediction coevolution benchmark by chica on 2009-08-11 17:09:43 as along with 3 people kgutwin zwang phoenixzxl
	Evolution in protein interaction networks: co-evolution, rewiring and the role of duplication. [My Copy] Biochemical Society transactions, Vol. 37, No. Pt 4. (August 2009), pp. 768-771. by David L. Robertson, Simon C. Lovell posted to network_evolution coevolution by chica on 2009-08-11 17:07:23 as along with 1 person biomcgary
	Predicting protein domain interactions from coevolution of conserved regions. [My Copy] Proteins, Vol. 67, No. 4. (1 June 2007), pp. 811-820. by Maricel G. Kann, Raja Jothi, Praveen F. Cherukuri, Teresa M. Przytycka posted to interaction_evolution domain_domain_interaction coevolution by chica on 2009-08-11 17:04:35 as along with 2 people roys cjeans
	Specificity in protein interactions and its relationship with sequence diversity and coevolution [My Copy] Proceedings of the National Academy of Sciences In Proceedings of the National Academy of Sciences, Vol. 104, No. 19. (8 May 2007), pp. 7999-8004. by Luke Hakes, Simon C. Lovell, Stephen G. Oliver, David L. Robertson posted to specificity interaction_evolution coevolution by chica on 2009-08-11 17:02:48 as along with 15 people and 2 groups dfdong mgomes diamantis dullhunk marti stevanspringer bjorns cjeans zwang Garamonfok cursonivel1 tale winterschlaefer phoenixzxl chrys FAB-lab cursonivel1
	ADVICE: Automated Detection and Validation of Interaction by Co-Evolution. [My Copy] Nucleic acids research, Vol. 32, No. Web Server issue. (1 July 2004) by Soon-Heng H. Tan, Zhuo Zhang, See-Kiong K. Ng posted to interaction_prediction computational_method coevolution by chica on 2009-08-11 17:00:51 as
	Evidence for the concerted evolution between short linear protein motifs and their flanking regions. [My Copy] PloS One, Vol. 4, No. 7. (2009) by Claudia Chica, Francesca Diella, Toby J. Gibson posted to coevolution linear_motif_context linear_motif_evolution by chica on 2009-08-10 13:54:46 as along with 1 person niallhaslam
	Asymmetrical evolution of cytochrome bd subunits. [My Copy] Journal of molecular evolution, Vol. 62, No. 2. (February 2006), pp. 132-142. by W. Hao, G. B. Golding posted to application coevolution cytochrome by chica on 2009-07-29 09:38:13 as
	Localizing proteins in the cell from their phylogenetic profiles. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 97, No. 22. (24 October 2000), pp. 12115-12120. by E. M. Marcotte, I. Xenarios, A. M. van Der Bliek, D. Eisenberg posted to application coevolution phylogenetic_profile by chica on 2009-07-29 08:33:20 as along with 6 people and 1 group thegoose2 oryadna tharris balajis shung raiyar C. elegans / WormBase
	The accuracy of ribosomal RNA comparative structure models. [My Copy] Current opinion in structural biology, Vol. 12, No. 3. (June 2002), pp. 301-310. by R. R. Gutell, J. C. Lee, J. J. Cannone posted to coevolution by chica on 2009-07-28 17:40:01 as along with 2 people and 2 groups marcius arcticrasta BioinfoCIPF SGU-CIPF
	A Model-Based Approach for Detecting Co-evolving Positions in a Molecule. [My Copy] Molecular biology and evolution. (8 June 2005) by Julien Dutheil, Tal Pupko, Alain Jean-Marie, Nicolas Galtier posted to coevolution probabilistic_model sequence-based_method by chica on 2009-07-28 17:22:49 as along with 3 people and 1 group stevanspringer RMGraze cjeans FAB-lab
	Detecting compensatory covariation signals in protein evolution using reconstructed ancestral sequences. [My Copy] Journal of molecular biology, Vol. 319, No. 3. (7 June 2002), pp. 729-743. by K. Fukami-Kobayashi, D. R. Schreiber, S. A. Benner posted to coevolution parsimony sequence-based_method by chica on 2009-07-28 17:19:18 as along with 3 people dfdong qluo ramensky
	Assessing protein co-evolution in the context of the tree of life assists in the prediction of the interactome. [My Copy] Journal of molecular biology, Vol. 352, No. 4. (30 September 2005), pp. 1002-1015. by Florencio Pazos, Juan A. Ranea, David Juan, Michael J. Sternberg posted to coevolution mirror__tree significance by chica on 2009-07-28 17:00:10 as along with 5 people jperkins biomcgary Robinder balajis cjeans
	Seeking the evolutionary regression coefficient: an analysis of what comparative methods measure. [My Copy] Journal of theoretical biology, Vol. 164, No. 2. (21 September 1993), pp. 191-205. by M. Pagel posted to coevolution comparative_method by chica on 2009-07-28 15:46:11 as
	A novel method for detecting intramolecular coevolution: adding a further dimension to selective constraints analyses. [My Copy] Genetics, Vol. 173, No. 1. (1 May 2006), pp. 9-23. by M. A. Fares, S. A. Travers posted to coevolution within_gene_coevo by chica on 2009-07-28 14:57:18 as along with 9 people and 3 groups biomcgary qluo marti stevanspringer operon caporaso breden cjeans tale FAB-lab biomedical-nlp SFUAntibodyResearch
	Phylogenies and comparative data, a microevolutionary perspective. [My Copy] Philosophical transactions of the Royal Society of London. Series B, Biological sciences, Vol. 349, No. 1327. (29 July 1995), pp. 85-91. by E. P. Martins posted to coevolution comparative_method within_gene_coevo by chica on 2009-07-28 14:54:10 as
	Coevolution within and between genes. [My Copy] Genome dynamics, Vol. 3 (2007), pp. 1-12. by N. Galtier, J. Dutheil posted to coevolution computational_method by chica on 2009-07-28 14:33:04 as
	Co-evolutionary analysis of domains in interacting proteins reveals insights into domain-domain interactions mediating protein-protein interactions. [My Copy] Journal of molecular biology, Vol. 362, No. 4. (29 September 2006), pp. 861-875. by R. Jothi, P. F. Cherukuri, A. Tasneem, T. M. Przytycka posted to coevolution domain_domain_interaction interaction_prediction by chica on 2009-07-20 13:54:57 as along with 5 people swp09 marti choonpeng grahamc iris_2001
	Predicting protein-protein interaction by searching evolutionary tree automorphism space. [My Copy] Bioinformatics (Oxford, England), Vol. 21 Suppl 1 (1 June 2005) by R. Jothi, M. G. Kann, T. M. Przytycka posted to coevolution interaction_prediction tree_comparison by chica on 2009-07-20 11:06:07 as along with 2 people marti bioinfo
	Exploiting the co-evolution of interacting proteins to discover interaction specificity. [My Copy] Journal of molecular biology, Vol. 327, No. 1. (14 March 2003), pp. 273-284. by Arun K. Ramani, Edward M. Marcotte posted to coevolution distance_matrix interaction_prediction by chica on 2009-07-20 10:56:53 as along with 2 people balajis ruvido
	Correlated mutations contain information about protein-protein interaction [My Copy] Journal of Molecular Biology, Vol. 271, No. 4. (29 August 1997), pp. 511-523. by F. Pazos posted to coevolution interaction_prediction by chica on 2009-07-20 10:19:43 as along with 8 people dfdong mgomes qluo RebeccaHamer gurkanbebek cjeans tale Lombardo_7
	Protein co-evolution, co-adaptation and interactions. [My Copy] The EMBO journal, Vol. 27, No. 20. (22 October 2008), pp. 2648-2655. by Florencio Pazos, Alfonso Valencia posted to coevolution interaction_evolution network_evolution by chica on 2009-07-15 22:23:27 as along with 8 people and 3 groups biomcgary qluo balicea grahamc fhsantanna marti barry sjcockell structural_bioinformatics McCammon Bioinformatics
	Co-evolutionary analysis reveals insights into protein-protein interactions. [My Copy] Journal of molecular biology, Vol. 324, No. 1. (15 November 2002), pp. 177-192. by C. S. Goh, F. E. Cohen posted to coevolution interaction_evolution receptor_ligand_coevolution by chica on 2009-07-15 20:00:07 as along with 2 people bicko ruvido
	Co-evolution of proteins with their interaction partners1 [My Copy] Journal of Molecular Biology, Vol. 299, No. 2. (02 June 2000), pp. 283-293. by Chern-Sing Goh, Andrew A. Bogan, Marcin Joachimiak, Dirk Walther, Fred E. Cohen posted to coevolution interaction_evolution by chica on 2009-07-15 19:57:00 as along with 6 people jperkins stharward druvus Robinder opheliav cjeans
	Correlated Evolution of Interacting Proteins: Looking Behind the Mirrortree [My Copy] Journal of Molecular Biology, Vol. 385, No. 1. (09 January 2009), pp. 91-98. by M. Kann, B. Shoemaker, A. Panchenko, T. Przytycka posted to coevolution protein_interaction by chica on 2009-07-01 11:04:32 as along with 11 people and 2 groups mgomes biomcgary druvus sobolevnrm mhofree grahamc barry zwang marti reyez paulschlesinger baker-group Bioinformatics

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coevolution	24
network_evolution	23
interaction_evolution	16
signalling_network	15
computational_method	15
interactome	10
interaction_network	10
pfalciparum	10
protein_interaction	9
interaction_prediction	8
linear_motif	8
protein_evolutionary_rate	7
protein_complex	7
database	7
phylogenetics	6
network_module	6
evolvability	6
yeast	6
interaction_interface	5
protein_function_prediction	5
protein_evolution	5
robustness	4
interolog	4
network_alignment	4
malaria	4
disorder	4
transcriptional_network	3
yeast_to_hybrid	3
data_quality	3
duplication	3
network_comparison	3
human	3
cooperativity	3
essenciality	3
experimental_method	3
selection	3
phylogenetic_profile	2
evolutionary_model	2
sequence-based_method	2
network_reconstruction	2
discovery_pipeline	2
synthetic_biology	2
benchmark	2
linear_motif_evolution	2
multiple_alignment	2
linear_pathways	2
specificity	2
network_topology	2
within_gene_coevo	2
neutral_evolution	2
mammalian	2
comparative_method	2
cell_cycle	2
drosophila	2
apicomplexa	2
mapk	2
maximum_likelihood	2
cancer	2
domain_domain_interaction	2
application	2
sorting	2
gene_expression	2
tap_purification	1
molecular_evolution	1
choanoflagellate	1
diabetes	1
cellular_machine	1
proteome	1
evolutionary_noise	1
proteomic_study	1
structural_study	1
sumoylation	1
thermodynamics	1
cell_growth	1
wnt	1
geographic_distribution	1
significance	1
influenza	1
protein_function	1
enzyme_evolution	1
clusters	1
structural_homology_modelling	1
probabilistic_model	1
disease	1
archaea	1
homomer	1
interdomain_interaction	1
socio_economical_study	1
homeostasis	1
gene_network	1
evolutionary_rate	1
drosophila_phylogeny	1
mapk_signalling_network	1
profile	1
parsimony	1
dynamics_modelling	1
mirror__tree	1
bacteria	1
non-homogeneus_models	1
genome_database	1
pairwise_alignment	1
plasmodium	1
jnk	1
protein_synthesis	1
raf	1
transcriptome	1
cell_regulation	1
cytochrome	1
lethality	1
src_famiy	1
comparative_proteomics	1
linear_motif_alignment	1
tree_comparison	1
receptor_ligand_coevolution	1
functional_overlap_paralogous	1
network_linkage	1
tyrosine_phosphorylation	1
conservation_score	1
models	1
transient_interactions	1
multidomain_protein	1
modular_interaction	1
codon_substitution_models	1
surface_proteins	1
folding	1
complex_organization	1
contrast_method	1
centrality	1
systems_biology	1
low_complexity	1
linear_motif_context	1
go_annotation	1
physiological_states	1
prediction_tool	1
feedback	1
high_throughput	1
genome	1
interaction_mechanism	1
distance_matrix	1
connectivity	1
drug_resistance	1
cooption_host_proteins	1
phosphorylation	1
quaternary_structure	1
expression_pattern	1
network_theory	1

chica's coevolution [24 articles] Export Sort

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