chica's network_evolution [23 articles] Export Sort

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	An evolutionary and structural characterization of mammalian protein complex organization. [My Copy] BMC genomics, Vol. 9, No. 1. (23 December 2008) by Philip Wong, Sonja Althammer, Andrea Hildebrand, et al.Andreas Kirschner, Philipp Pagel, Bernd Geissler, Pawel Smialowski, Florian Blöchl, Matthias Oesterheld, Thorsten Schmidt, Normann Strack, Fabian J. Theis, Andreas Ruepp, Dmitrij Frishman posted to network_evolution mammalian complex_organization by chica on 2009-10-06 11:35:04 as along with 3 people zwang phoenixzxl chad_davis
	Evolution in protein interaction networks: co-evolution, rewiring and the role of duplication. [My Copy] Biochemical Society transactions, Vol. 37, No. Pt 4. (August 2009), pp. 768-771. by David L. Robertson, Simon C. Lovell posted to network_evolution coevolution by chica on 2009-08-11 17:07:23 as along with 1 person biomcgary
	Mitogen-Activated Protein Kinase: Conservation of a Three-Kinase Module From Yeast to Human [My Copy] Physiol. Rev., Vol. 79, No. 1. (1 January 1999), pp. 143-180. by C. Widmann, S. Gibson, M. B. Jarpe, G. L. Johnson posted to mapk network_evolution network_module signalling_network by chica on 2009-08-10 11:51:17 as along with 2 people eudominguezmartin baikanamako
	Clues to the evolution of complex signaling machinery. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 28. (15 July 2008), pp. 9453-9454. by Bruce J. Mayer posted to choanoflagellate network_evolution tyrosine_phosphorylation by chica on 2009-08-10 11:38:46 as
	Unequal evolutionary conservation of human protein interactions in interologous networks. [My Copy] Genome biology, Vol. 8, No. 5. (29 May 2007), R95. by Kevin R. Brown, Igor Jurisica posted to interaction_evolution interolog network_evolution by chica on 2009-08-10 10:29:47 as along with 6 people saket cerca diamantis grahamc zwang winterschlaefer
	A complex-centric view of protein network evolution. [My Copy] Nucleic acids research, Vol. 37, No. 12. (1 July 2009), e88. by Nir Yosef, Martin Kupiec, Eytan Ruppin, Roded Sharan posted to network_comparison network_evolution protein_complex by chica on 2009-08-10 10:07:58 as along with 11 people and 1 group carlk saket dakelley tomhebbron davidalee leemond31 druvus kiekyon neils tmmurali grahamc Orengo Group Journal Picks
	Organization of cell-regulatory systems through modular-protein-interaction domains. [My Copy] Philosophical transactions. Series A, Mathematical, physical, and engineering sciences, Vol. 361, No. 1807. (15 June 2003), pp. 1251-1262. by Tony Pawson posted to modular_interaction network_evolution network_linkage by chica on 2009-08-03 22:27:08 as along with 1 person Evangelia
	Regulatory evolution across the protein interaction network. [My Copy] Nature genetics, Vol. 36, No. 10. (October 2004), pp. 1059-1060. by Bernardo Lemos, Colin D. Meiklejohn, Daniel L. Hartl posted to expression_pattern interaction_evolution network_evolution by chica on 2009-08-02 12:30:55 as along with 1 person and 1 group penka Nie
	Evolvability. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 95, No. 15. (21 July 1998), pp. 8420-8427. by M. Kirschner, J. Gerhart posted to interaction_network network_evolution network_module by chica on 2009-07-30 15:06:40 as along with 12 people and 1 group Scis0000002 ynaito rklancer betainverse sccook eldan ryang balicea larios timflutre qwermish mahmoodr Centre de Recherches Interdisciplinaires
	Protein co-evolution, co-adaptation and interactions. [My Copy] The EMBO journal, Vol. 27, No. 20. (22 October 2008), pp. 2648-2655. by Florencio Pazos, Alfonso Valencia posted to coevolution interaction_evolution network_evolution by chica on 2009-07-15 22:23:27 as along with 9 people and 3 groups paulymer biomcgary qluo balicea grahamc fhsantanna marti barry sjcockell structural_bioinformatics McCammon Bioinformatics
	Modeling cellular machinery through biological network comparison. [My Copy] Nature biotechnology, Vol. 24, No. 4. (06 April 2006), pp. 427-433. by Roded Sharan, Trey Ideker posted to interaction_network interaction_prediction network_evolution protein_function_prediction by chica on 2009-07-15 20:59:13 as along with 22 people and 1 group akshayk sergiun cswinburne kaarsinogen isimpson tmmurali kuhn tuck yas balajis wnpx ma_ko gurkanbebek koller gcalda grahamc massivemayhem karfunkel mingzhi vietanh0 cdeane carlk T_lab
	How the global structure of protein interaction networks evolves. [My Copy] Proceedings. Biological sciences / The Royal Society, Vol. 270, No. 1514. (7 March 2003), pp. 457-466. by Andreas Wagner posted to interaction_evolution network_evolution by chica on 2009-07-02 14:39:23 as along with 3 people saket yoh iris_2001
	Domains, Motifs, and Scaffolds: The Role of Modular Interactions in the Evolution and Wiring of Cell Signaling Circuits [My Copy] Annual Review of Biochemistry, Vol. 75, No. 1. (17 March 2006), pp. 655-680. by Roby P. Bhattacharyya, Attila Reményi, Brian J. Yeh, Wendell A. Lim posted to evolvability network_evolution network_module signalling_network by chica on 2009-07-01 14:19:19 as along with 14 people dfdong tomhebbron Scis0000002 mmcclean laurabailey rklancer matzke imouthesmp choonpeng koller cjeans melting carlk gulkur
	The Yeast Protein Interaction Network Evolves Rapidly and Contains Few Redundant Duplicate Genes [My Copy] Mol Biol Evol, Vol. 18, No. 7. (1 July 2001), pp. 1283-1292. by Andreas Wagner posted to duplication network_evolution yeast by chica on 2009-07-01 13:56:29 as along with 7 people dannya222 kentz dragonrez shivaram gurkanbebek koller gcalda
	How to reconstruct a large genetic network from n gene perturbations in fewer than n(2) easy steps. [My Copy] Bioinformatics, Vol. 17, No. 12. (December 2001), pp. 1183-1197. by A. Wagner posted to network_evolution network_reconstruction by chica on 2009-07-01 13:53:48 as along with 1 person systemsbiology
	Structure and evolution of protein interaction networks: a statistical model for link dynamics and gene duplications [My Copy] BMC Evolutionary Biology, Vol. 4, No. 1. (27 November 2004), 51. by Johannes Berg, Michael Lassig, Andreas Wagner posted to duplication evolutionary_model network_evolution yeast by chica on 2009-07-01 13:50:32 as along with 8 people saket sergiun kaarsinogen diamantis phoenixzxl j3xucite timflutre iris_2001
	Multifunctionality and robustness trade-offs in model genetic circuits. [My Copy] Biophysical journal, Vol. 94, No. 8. (15 April 2008), pp. 2927-2937. by O. C. Martin, A. Wagner posted to drosophila network_evolution robustness transcriptional_network by chica on 2009-07-01 13:42:04 as
	Neutralism and selectionism: a network-based reconciliation. [My Copy] Nature reviews. Genetics, Vol. 9, No. 12. (29 December 2008), pp. 965-974. by A. Wagner posted to network_evolution neutral_evolution selection by chica on 2009-07-01 13:33:20 as along with 10 people gwallau operon ilyashl Petersarkies ccots pansapiens lp2 renewang pkonings gjuggler
	Does selection mold molecular networks? [My Copy] Science's STKE : signal transduction knowledge environment, Vol. 2003, No. 202. (30 September 2003) by A. Wagner posted to network_evolution selection by chica on 2009-07-01 13:31:06 as along with 2 people lshaw timflutre
	Evolution and dynamics of protein interactions and networks [My Copy] Current Opinion in Structural Biology, Vol. 18, No. 3. (June 2008), pp. 349-357. by E. Levy, J. Pereiraleal posted to interaction_evolution network_evolution by chica on 2009-07-01 13:08:09 as along with 8 people saket carlk paolomarcatili guhjy neils cabbagesofdoom marck zdai
	Evolutionary dynamics of prokaryotic transcriptional regulatory networks. [My Copy] Journal of molecular biology, Vol. 358, No. 2. (28 April 2006), pp. 614-633. by Madan M. Babu, S. A. Teichmann, L. Aravind posted to network_evolution transcriptional_network by chica on 2009-07-01 12:35:18 as along with 8 people kaarsinogen jjray balabu Retchless tny tvdbulck timflutre cjeans
	Specificity and evolvability in eukaryotic protein interaction networks. [My Copy] PLoS computational biology, Vol. 3, No. 2. (16 February 2007), e25. by Pedro Beltrao, Luis Serrano posted to evolvability network_evolution specificity by chica on 2009-07-01 11:49:22 as along with 6 people saket kiekyon marti aalibes dylan77 aheilbut
	Molecular evolution in large genetic networks: does connectivity equal constraint? [My Copy] Journal of molecular evolution, Vol. 58, No. 2. (February 2004), pp. 203-211. by M. W. Hahn, G. C. Conant, A. Wagner posted to connectivity network_evolution by chica on 2009-07-01 10:59:29 as along with 3 people and 1 group diamantis penka cjeans Nie

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coevolution	24
network_evolution	23
interaction_evolution	16
signalling_network	15
computational_method	15
interactome	10
interaction_network	10
pfalciparum	10
protein_interaction	9
interaction_prediction	8
linear_motif	8
protein_evolutionary_rate	7
protein_complex	7
database	7
phylogenetics	6
network_module	6
evolvability	6
yeast	6
interaction_interface	5
protein_function_prediction	5
protein_evolution	5
robustness	4
interolog	4
network_alignment	4
malaria	4
disorder	4
transcriptional_network	3
yeast_to_hybrid	3
data_quality	3
duplication	3
network_comparison	3
human	3
cooperativity	3
essenciality	3
experimental_method	3
selection	3
phylogenetic_profile	2
evolutionary_model	2
sequence-based_method	2
network_reconstruction	2
discovery_pipeline	2
synthetic_biology	2
benchmark	2
linear_motif_evolution	2
multiple_alignment	2
linear_pathways	2
specificity	2
network_topology	2
within_gene_coevo	2
neutral_evolution	2
mammalian	2
comparative_method	2
cell_cycle	2
drosophila	2
apicomplexa	2
mapk	2
maximum_likelihood	2
cancer	2
domain_domain_interaction	2
application	2
sorting	2
gene_expression	2
tap_purification	1
molecular_evolution	1
choanoflagellate	1
diabetes	1
cellular_machine	1
proteome	1
evolutionary_noise	1
proteomic_study	1
structural_study	1
sumoylation	1
thermodynamics	1
cell_growth	1
wnt	1
geographic_distribution	1
significance	1
influenza	1
protein_function	1
enzyme_evolution	1
clusters	1
structural_homology_modelling	1
probabilistic_model	1
disease	1
archaea	1
homomer	1
interdomain_interaction	1
socio_economical_study	1
homeostasis	1
gene_network	1
evolutionary_rate	1
drosophila_phylogeny	1
mapk_signalling_network	1
profile	1
parsimony	1
dynamics_modelling	1
mirror__tree	1
bacteria	1
non-homogeneus_models	1
genome_database	1
pairwise_alignment	1
plasmodium	1
jnk	1
protein_synthesis	1
raf	1
transcriptome	1
cell_regulation	1
cytochrome	1
lethality	1
src_famiy	1
comparative_proteomics	1
linear_motif_alignment	1
tree_comparison	1
receptor_ligand_coevolution	1
functional_overlap_paralogous	1
network_linkage	1
tyrosine_phosphorylation	1
conservation_score	1
models	1
transient_interactions	1
multidomain_protein	1
modular_interaction	1
codon_substitution_models	1
surface_proteins	1
folding	1
complex_organization	1
contrast_method	1
centrality	1
systems_biology	1
low_complexity	1
linear_motif_context	1
go_annotation	1
physiological_states	1
prediction_tool	1
feedback	1
high_throughput	1
genome	1
interaction_mechanism	1
distance_matrix	1
connectivity	1
drug_resistance	1
cooption_host_proteins	1
phosphorylation	1
quaternary_structure	1
expression_pattern	1
network_theory	1

chica's network_evolution [23 articles] Export Sort

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