Characterization of heteropolymer collapse Export

@article{Skjaeveland_EPJE00, abstract = {Abstract: \ \ This paper proposes a method to enumerate and characterize the multidimensional rearrangement that a heteropolymer collapse represents. We follow the collapse using Langevin dynamics, and analyze folding pathways by measuring how matches to the final state develop, when viewed from each monomer in the polymer. The method is illustrated by following one specific heteropolymer, which was selected to have repeatable dynamical access to its final state. For this heteropolymer we found a nucleation event that precedes the correctly folded state.}, author = {Skjaeveland and Sneppen, K.}, citeulike-article-id = {3501984}, citeulike-linkout-0 = {http://dx.doi.org/10.1007/PL00013672}, citeulike-linkout-1 = {http://www.springerlink.com/content/acf85y5ebny2f3jn}, day = {19}, doi = {10.1007/PL00013672}, journal = {The European Physical Journal E - Soft Matter}, keywords = {coarse-grained, langevin, mds, polymer, protein, simulations}, month = {July}, number = {3}, pages = {285--288}, posted-at = {2008-11-10 23:56:44}, priority = {2}, title = {Characterization of heteropolymer collapse}, url = {http://dx.doi.org/10.1007/PL00013672}, volume = {2}, year = {2000} }

TY - JOUR ID - Skjaeveland_EPJE00 L3 - citeulike-article-id:3501984 N2 - Abstract:   This paper proposes a method to enumerate and characterize the multidimensional rearrangement that a heteropolymer collapse represents. We follow the collapse using Langevin dynamics, and analyze folding pathways by measuring how matches to the final state develop, when viewed from each monomer in the polymer. The method is illustrated by following one specific heteropolymer, which was selected to have repeatable dynamical access to its final state. For this heteropolymer we found a nucleation event that precedes the correctly folded state. IS - 3 JF - The European Physical Journal E - Soft Matter EP - 288 TI - Characterization of heteropolymer collapse VL - 2 SP - 285 KW - coarse-grained KW - langevin KW - mds KW - polymer KW - protein KW - simulations AU - Skjaeveland AU - Sneppen, K PY - 2000/07/19/ UR - http://dx.doi.org/10.1007/PL00013672 ER -