choonpeng's library 1053 articles Export

	Adenosine receptors: therapeutic aspects for inflammatory and immune diseases. [My Copy] Nature reviews. Drug discovery, Vol. 7, No. 9. (September 2008), pp. 759-770. by György Haskó, Joel Linden, Bruce Cronstein, Pál Pacher posted to transmembrane signaling by choonpeng on 2009-11-16 00:56:07 as along with 1 person guhjy
	Reassessing a sparse energetic network within a single protein domain [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 12. (25 March 2008), pp. 4679-4684. by Celestine N. Chi, Lisa Elfström, Yao Shi, Tord Snäll, Åke Engström, Per Jemth posted to allostery by choonpeng on 2009-11-12 03:26:14 as along with 6 people and 1 group barry apaydin cjeans cactus sunhwan sobolevnrm baker-group
	Adhesion signaling - crosstalk between integrins, Src and Rho. [My Copy] Journal of cell science, Vol. 122, No. Pt 8. (15 April 2009), pp. 1059-1069. by Stephan Huveneers, Erik H. Danen posted to signaling integrin by choonpeng on 2009-11-12 01:55:14 as along with 1 person guhjy
	Structure of an integrin aIIbb3 transmembrane-cytoplasmic heterocomplex provides insight into integrin activation [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 42. (20 October 2009), pp. 17729-17734. by Jun Yang, Yan-Qing Ma, Richard C. Page, Saurav Misra, Edward F. Plow, Jun Qin posted to integrin by choonpeng on 2009-10-25 13:37:29 as
	Targeting leukocyte integrins in human diseases [My Copy] J Leukoc Biol, Vol. 77, No. 2. (1 February 2005), pp. 129-140. by Karyn Yonekawa, John M. Harlan posted to integrin by choonpeng on 2009-10-22 06:35:46 as
	High-resolution cryo-EM structure of the F-actin-fimbrin/plastin ABD2 complex. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 5. (5 February 2008), pp. 1494-1498. by Vitold E. Galkin, Albina Orlova, Olga Cherepanova, Marie-Christine C. Lebart, Edward H. Egelman posted to modular cytoskeletal-dynamics by choonpeng on 2009-09-22 04:33:07 as
	Novel structural insights into F-actin-binding and novel functions of calponin homology domains. [My Copy] Current opinion in structural biology, Vol. 18, No. 6. (December 2008), pp. 702-708. by Björn Sjöblom, Jari Ylänne, Kristina Djinović-Carugo posted to review modular cytoskeletal-dynamics by choonpeng on 2009-09-17 04:10:49 as
	An open or closed case for the conformation of calponin homology domains on F-actin? [My Copy] Journal of Muscle Research and Cell Motility, Vol. 25, No. 4. (1 August 2004), pp. 351-358. by William Lehman, Roger Craig, John Kendrick-Jones, Andrew Sutherland-Smith posted to modular cytoskeletal-dynamics by choonpeng on 2009-09-17 04:09:04 as
	Functional plasticity of CH domains [My Copy] FEBS Letters, Vol. 513, No. 1. (February 2002), pp. 98-106. by M. Gimona, K. Djinovic-Carugo, W. J. Kranewitter, S. J. Winder posted to modular cytoskeletal-dynamics by choonpeng on 2009-09-17 04:01:35 as
	Free-energy landscapes of proteins in the presence and absence of force. [My Copy] The journal of physical chemistry. B, Vol. 112, No. 51. (25 December 2008), pp. 16902-16907. by Zu Thur T. Yew, Sergei Krivov, Emanuele Paci posted to theoretical mechanical-unfolding by choonpeng on 2009-09-15 09:19:14 as
	A Naturally Occurring Extracellular α−β Clasp Contributes to Stabilization of β3 Integrins in a Bent, Resting Conformation† [My Copy] Biochemistry, Vol. 47, No. 44. (4 November 2008), pp. 11616-11624. by Anthony N. Vomund, Sarah Stuhlsatz-Krouper, Julie Dimitry, Yuhua Song, William A. Frazier posted to integrin cell-adhesion by choonpeng on 2009-09-01 05:12:01 as along with 1 person aqeel
	A mechanical unfolding intermediate in an actin-crosslinking protein. [My Copy] Nature structural & molecular biology, Vol. 11, No. 1. (January 2004), pp. 81-85. by Ingo Schwaiger, Angelika Kardinal, Michael Schleicher, Angelika A. Noegel, Matthias Rief posted to mechanical-unfolding by choonpeng on 2009-08-31 06:51:17 as along with 2 people and 1 group skoch3 ruudvanleeuwen Koch_Lab
	The regulation mechanism for the auto-inhibition of binding of human filamin A to integrin. [My Copy] Journal of molecular biology (19 August 2009) by Ulla Pentikäinen, Jari Ylänne posted to mechanotransduction force-probe-md by choonpeng on 2009-08-31 06:33:20 as
	Cell death and mechanoprotection by filamin a in connective tissues after challenge by applied tensile forces. [My Copy] The Journal of biological chemistry, Vol. 277, No. 24. (14 June 2002), pp. 21998-22009. by Tiina Kainulainen, Alexandra Pender, Mario D'Addario, Yuanyi Feng, Predrag Lekic, Christopher A. McCulloch posted to mechanotransduction cytoskeletal-dynamics by choonpeng on 2009-08-31 05:55:36 as
	Structural basis of filamin A functions [My Copy] J. Cell Biol., Vol. 179, No. 5. (3 December 2007), pp. 1011-1025. by Fumihiko Nakamura, Teresia M. Osborn, Christopher A. Hartemink, John H. Hartwig, Thomas P. Stossel posted to modular mechanotransduction cytoskeletal-dynamics by choonpeng on 2009-08-31 05:52:01 as along with 1 person lrog
	Adherens and tight junctions: Structure, function and connections to the actin cytoskeleton [My Copy] Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. 1778, No. 3. (March 2008), pp. 660-669. by A. Hartsock, W. Nelson posted to review cell-adhesion by choonpeng on 2009-08-17 08:56:33 as along with 2 people jamesy8008 guhjy
	Molecular components of the adherens junction [My Copy] Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. 1778, No. 3. (March 2008), pp. 562-571. by C. Niessen, C. Gottardi posted to cell-adhesion by choonpeng on 2009-08-17 08:51:20 as along with 1 person daforerog
	Coupled Stochastic Spatial and Non-Spatial Simulations of ErbB1 Signaling Pathways Demonstrate the Importance of Spatial Organization in Signal Transduction [My Copy] PLoS ONE, Vol. 4, No. 7. (23 July 2009), e6316. by Michelle N. Costa, Krishnan Radhakrishnan, Bridget S. Wilson, Dionisios G. Vlachos, Jeremy S. Edwards posted to signaling protein-interaction kinetics diffusion by choonpeng on 2009-08-13 06:08:02 as
	Actin restricts Fc[epsiv]RI diffusion and facilitates antigen-induced receptor immobilization [My Copy] Nat Cell Biol, Vol. 10, No. 8. (20 August 2008), pp. 955-963. by Nicholas L. Andrews, Keith A. Lidke, Janet R. Pfeiffer, et al.Alan R. Burns, Bridget S. Wilson, Janet M. Oliver, Diane S. Lidke posted to transmembrane diffusion cytoskeletal-dynamics by choonpeng on 2009-08-13 05:34:00 as
	Dynamics of putative raft-associated proteins at the cell surface [My Copy] J. Cell Biol., Vol. 165, No. 5. (7 June 2004), pp. 735-746. by Anne K. Kenworthy, Benjamin J. Nichols, Catha L. Remmert, et al.Glenn M. Hendrix, Mukesh Kumar, Joshua Zimmerberg, Jennifer Lippincott-Schwartz posted to transmembrane diffusion by choonpeng on 2009-08-13 03:39:35 as
	On the Contributions of Diffusion and Thermal Activation to Electron Transfer between Phormidium laminosum Plastocyanin and Cytochrome f: Brownian Dynamics Simulations with Explicit Modeling of Nonpolar Desolvation Interactions and Electron Transfer Events [My Copy] Journal of the American Chemical Society, Vol. 131, No. 26. (8 July 2009), pp. 9230-9238. by Razif R. Gabdoulline, Rebecca C. Wade posted to diffusion by choonpeng on 2009-08-13 02:47:20 as along with 2 people and 2 groups jmccammon whitead McCammon Jiang Research Group
	Role of Hydrogen Bonding and Helix−Lipid Interactions in Transmembrane Helix Association [My Copy] Journal of the American Chemical Society, Vol. 130, No. 20. (1 May 2008), pp. 6456-6462. by Jinhyuk Lee, Wonpil Im posted to methodology transmembrane by choonpeng on 2009-08-03 09:09:19 as along with 1 person and 1 group sobolevnrm baker-group
	Coarse-graining protein structures with local multivariate features from molecular dynamics. [My Copy] The journal of physical chemistry. B, Vol. 112, No. 44. (6 November 2008), pp. 14026-14035. by Zhiyong Zhang, Willy Wriggers posted to methodology pca protein-dynamics by choonpeng on 2009-07-31 11:19:36 as along with 1 person and 1 group sobolevnrm baker-group
	Control of protein functional dynamics by peptide linkers. [My Copy] Biopolymers, Vol. 80, No. 6. (2005), pp. 736-746. by Willy Wriggers, Sugoto Chakravarty, Patricia A. Jennings posted to protein-domains protein-dynamics by choonpeng on 2009-07-31 09:01:01 as
	Solvent-Free Lipid Bilayer Model Using Multiscale Coarse-Graining [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 13. (2 April 2009), pp. 4443-4455. by Sergei Izvekov, Gregory A. Voth posted to coarse-grained methodology transmembrane by choonpeng on 2009-07-27 11:43:15 as along with 3 people and 1 group flbarroso agrossfield sobolevnrm baker-group
	Curvature coupling dependence of membrane protein diffusion coefficients. [My Copy] Langmuir : the ACS journal of surfaces and colloids, Vol. 24, No. 4. (19 February 2008), pp. 1254-1261. by S. M. Leitenberger, E. Reister-Gottfried, U. Seifert posted to diffusion by choonpeng on 2009-07-27 08:20:32 as along with 1 person and 1 group sobolevnrm baker-group
	Quantitative microscopy: protein dynamics and membrane organisation. [My Copy] Traffic (Copenhagen, Denmark), Vol. 10, No. 8. (August 2009), pp. 962-971. by D. M. Owen, D. Williamson, C. Rentero, K. Gaus posted to diffusion transmembrane by choonpeng on 2009-07-24 09:20:27 as
	What do diffusion measurements tell us about membrane compartmentalisation? Emergence of the role of interprotein interactions. [My Copy] Journal of chemical biology, Vol. 1, No. 1-4. (1 November 2008), pp. 37-48. by Nicolas Destainville, Fabrice Dumas, Laurence Salomé posted to diffusion by choonpeng on 2009-07-24 09:18:11 as along with 1 person ARobson
	Crystal Structure of the Extracellular Segment of Integrin alpha Vbeta 3 [My Copy] Science, Vol. 294, No. 5541. (12 October 2001), pp. 339-345. by Jian-Ping Xiong, Thilo Stehle, Beate Diefenbach, et al.Rongguang Zhang, Reinhardt Dunker, David L. Scott, Andrzej Joachimiak, Simon L. Goodman, M. Amin Arnaout posted to integrin by choonpeng on 2009-07-14 12:27:00 as along with 1 person aqeel
	Macromolecular Modeling with Rosetta [My Copy] Annual Review of Biochemistry, Vol. 77, No. 1. (2008), pp. 363-382. by Rhiju Das, David Baker posted to no-tag by choonpeng on 2009-06-30 04:04:48 as along with 9 people bmduggan mijam kgutwin carlk phoenixzxl krapnik flbarroso saunders gisle
	Relationships between three-body and two-body interactions in fluids and solids [My Copy] The Journal of Chemical Physics, Vol. 125, No. 14. (2006), 144509. by Liping Wang, Richard J. Sadus posted to methodology by choonpeng on 2009-06-23 11:19:29 as
	Role of nonadditive forces on the structure and properties of liquid water [My Copy] The Journal of Chemical Physics, Vol. 127, No. 15. (2007), 154509. by Jianhui Li, Zhongwu Zhou, Richard J. Sadus posted to methodology by choonpeng on 2009-06-23 11:07:27 as
	Coarse-Grained Molecular Simulation of Diffusion and Reaction Kinetics in a Crowded Virtual Cytoplasm [My Copy] Vol. 94, No. 10. (15 May 2008), pp. 3748-3759. by Douglas Ridgway, Gordon Broderick, Ana Lopez-Campistrous, et al.Melania Ruaini, Philip Winter, Matthew Hamilton, Pierre Boulanger, Andriy Kovalenko, Michael J. Ellison posted to crowding by choonpeng on 2009-06-14 07:40:10 as
	Sampling the Cell with Anomalous DiffusionThe Discovery of Slowness [My Copy] Vol. 94, No. 1. (1 January 2008), pp. 90-94. by Gernot Guigas, Matthias Weiss posted to crowding by choonpeng on 2009-06-14 07:38:11 as
	Macromolecular crowding: qualitative and semiquantitative successes, quantitative challenges. [My Copy] Biochimica et biophysica acta, Vol. 1649, No. 2. (30 July 2003), pp. 127-139. by D. Hall, A. P. Minton posted to crowding by choonpeng on 2009-06-14 07:37:09 as
	Crowding effects on diffusion in solutions and cells. [My Copy] Annual review of biophysics, Vol. 37 (2008), pp. 247-263. by J. A. Dix, A. S. Verkman posted to crowding review by choonpeng on 2009-06-14 07:35:38 as along with 4 people mhellmann ocs jonesn ARobson
	Atomically Detailed Simulations of Concentrated Protein Solutions: The Effects of Salt, pH, Point Mutations, and Protein Concentration in Simulations of 1000-Molecule Systems [My Copy] J. Am. Chem. Soc., Vol. 128, No. 37. (20 September 2006), pp. 12098-12110. by S. R. Mcguffee, A. H. Elcock posted to crowding by choonpeng on 2009-06-14 07:33:17 as along with 1 person ras
	Structure of the bacterial flagellar hook and implication for the molecular universal joint mechanism [My Copy] Nature, Vol. 431, No. 7012. (28 October 2004), pp. 1062-1068. by Fadel A. Samatey, Hideyuki Matsunami, Katsumi Imada, et al.Shigehiro Nagashima, Tanvir R. Shaikh, Dennis R. Thomas, James Z. Chen, David J. Derosier, Akio Kitao, Keiichi Namba posted to flagellar by choonpeng on 2009-06-14 07:23:12 as
	MMTSB Tool Set: enhanced sampling and multiscale modeling methods for applications in structural biology. [My Copy] J Mol Graph Model, Vol. 22, No. 5. (May 2004), pp. 377-395. by M. Feig, J. Karanicolas, C. L. Brooks posted to software by choonpeng on 2009-06-14 07:13:00 as along with 3 people dgront allmensch qwermish
	Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes [My Copy] Journal of Computational Physics, Vol. 23, No. 3. (March 1977), pp. 327-341. by J. Ryckaert, G. Ciccotti, H. Berendsen posted to methodology by choonpeng on 2009-06-14 06:58:48 as along with 8 people Vadikus dimka rpetrenko gcottone stephenbond bmduggan A_Coletta_Thesis ashaytan
	Steered molecular dynamics simulation of conformational changes of immunoglobulin domain I27 interprete atomic force microscopy observations [My Copy] Chemical Physics, Vol. 247, No. 1. (01 August 1999), pp. 141-153. by H. Lu, K. Schulten posted to force-probe-md by choonpeng on 2009-06-14 06:50:31 as
	Toward realistic modeling of dynamic processes in cell signaling: Quantification of macromolecular crowding effects [My Copy] The Journal of Chemical Physics, Vol. 127, No. 15. (2007) by Jian Sun, Harel Weinstein posted to crowding by choonpeng on 2009-05-25 09:34:32 as along with 4 people and 1 group jonesn ARobson cactus sobolevnrm baker-group
	Influence of macromolecular crowding on protein-protein association rates - a Brownian Dynamics study [My Copy] Biophys. J. (29 August 2008), biophysj.108.136291. by Grzegorz A. Wieczorek, Piotr Zielenkiewicz posted to coarse-grained crowding by choonpeng on 2009-05-25 09:32:02 as along with 3 people itmeson ocs paulschlesinger
	Predicting the order in which contacts are broken during single molecule protein stretching experiments [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 71, No. 1. (2008), pp. 45-60. by Joanna I. Su&lstrok;kowska, Andrzej Kloczkowski, Taner Z. Sen, Marek Cieplak, Robert L. Jernigan posted to coarse-grained mechanical-unfolding by choonpeng on 2009-05-19 04:17:01 as along with 1 person edws
	Pathways and Kinetic Barriers in Mechanical Unfolding and Refolding of RNA and Proteins [My Copy] Vol. 14, No. 11. (1 November 2006), pp. 1633-1645. by Changbong Hyeon, Ruxandra I. Dima, D. Thirumalai posted to no-tag by choonpeng on 2009-05-19 03:58:17 as
	How actin crosslinking and bundling proteins cooperate to generate an enhanced cell mechanical response [My Copy] Biochemical and Biophysical Research Communications, Vol. 334, No. 1. (19 August 2005), pp. 183-192. by Y. Tseng, T. Kole, J. Lee, et al.E. Fedorov, S. Almo, B. Schafer, D. Wirtz posted to cytoskeletal-dynamics by choonpeng on 2009-05-08 12:26:26 as along with 1 group Reunions Biblio Spectro-IAB
	Chapter 15: Live-cell single-molecule force spectroscopy. [My Copy] Methods in cell biology, Vol. 89 (2008), pp. 411-432. by T. M. Dobrowsky, P. Panorchan, K. Konstantopoulos, D. Wirtz posted to cell-adhesion by choonpeng on 2009-05-08 12:22:20 as
	α-Actinin and Filamin Cooperatively Enhance the Stiffness of Actin Filament Networks [My Copy] PLoS ONE, Vol. 4, No. 2. (9 February 2009), e4411. by Osigwe Esue, Yiider Tseng, Denis Wirtz posted to cytoskeletal-dynamics by choonpeng on 2009-05-08 12:19:10 as
	Measuring molecular rupture forces between single actin filaments and actin-binding proteins [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 27. (July 2008), pp. 9221-9226. by Jorge M. Ferrer, Hyungsuk Lee, Jiong Chen, et al.Benjamin Pelz, Fumihiko Nakamura, Roger D. Kamm, Matthew J. Lang posted to cytoskeletal-dynamics single-molecule-methods by choonpeng on 2009-05-06 10:59:00 as along with 2 people lrog katiehumphry
	Concerted simulations reveal how peroxidase compound III formation results in cellular oscillations. [My Copy] Biophysical journal, Vol. 85, No. 3. (September 2003), pp. 1421-1428. by R. R. Gabdoulline, U. Kummer, L. F. Olsen, R. C. Wade posted to kinetics by choonpeng on 2009-05-06 01:44:50 as

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protein-folding	177
modular	117
coarse-grained	111
review	90
protein-interaction	87
protein-domains	83
force-probe-md	64
mechanotransduction	63
flagellar	61
methodology	52
protein-translocation	48
single-molecule-methods	48
allostery	45
signaling	43
cell-adhesion	41
high-t-md	40
ttss	29
nma	28
transmembrane	27
integrin	26
mechanical-unfolding	26
solvent-effects	24
protein-mechanics	22
books	21
protein-stability	19
pca	18
chaperone	16
cytoskeletal-dynamics	16
folding-nucleus	16
cooperativity	15
folding-intermediate	15
web-server	15
go-model	14
bioinformatics	13
ensemble	12
implicit-solvent	12
theoretical	11
software	10
self-assembly	9
denatured-state	8
crowding	7
diffusion	7
multi-scale	7
protein-degradation	7
ig-like	6
kinetics	6
computer-programming	5
protein-secretion	5
salt-bridge	5
protein-dynamics	4
structure-validation	3
science-presentation	1
science-writing	1

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