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choonpeng's library [892 articles]

Recent papers added to choonpeng's library.
  • Protein unfolding by mitochondria. The Hsp70 import motor.
    EMBO reports, Vol. 1, No. 5. (November 2000), pp. 404-410.
    by A Matouschek, N Pfanner, W Voos
    posted to review protein-translocation by choonpeng on 2008-05-12 04:43:53 as ***
  • Identifying folding nucleus based on residue contact networks of proteins.
    Proteins, Vol. 71, No. 4. (3 January 2008), pp. 1899-1907.
    by Jie Li, Jun Wang, Wei Wang
    posted to folding-nucleus by choonpeng on 2008-05-07 03:10:51 as ***
  • Design of protein function leaps by directed domain interface evolution
    Proceedings of the National Academy of Sciences (29 April 2008), 0801097105.
    by Jin Huang, Akiko Koide, Koki Makabe, Shohei Koide
    posted to protein-interaction multi-domain by choonpeng on 2008-05-07 02:56:16 as ** along with 2 people zwang cmzmasek
  • Rapid signal transduction in living cells is a unique feature of mechanotransduction.
    Proceedings of the National Academy of Sciences of the United States of America (2 May 2008)
    by Sungsoo Na, Olivier Collin, Farhan Chowdhury, Bernard Tay, Mingxing Ouyang, Yingxiao Wang, Ning Wang
    posted to mechanotransduction cell-adhesion by choonpeng on 2008-05-07 02:53:12 as ***
  • From Molecular Cell Engineering to Biologically Inspired Engineering
    Cellular and Molecular Bioengineering, Vol. 1, No. 1. (15 March 2008), pp. 51-57.
    by Donald Ingber
    posted to review mechanotransduction cytoskeletal-dynamics by choonpeng on 2008-05-05 08:03:16 as read
  • Sequence and Structural Determinants of Strand Swapping in Cadherin Domains: Do All Cadherins Bind Through the Same Adhesive Interface?
    Journal of Molecular Biology, Vol. 378, No. 4. (9 May 2008), pp. 952-966.
    by Shoshana Posy, Lawrence Shapiro, Barry Honig
    posted to comparative-modeling cell-adhesion by choonpeng on 2008-05-05 06:13:49 as ***
  • notes Dynamics and stability of E-cadherin dimers.
    Biophysical journal, Vol. 91, No. 11. (1 December 2006), pp. 3964-3971.
    by F Cailliez, R Lavery
    posted to cell-adhesion by choonpeng on 2008-05-05 05:47:45 as **
  • Studies of focal adhesion assembly.
    Biochemical Society transactions, Vol. 36, No. Pt 2. (April 2008), pp. 263-266.
    by ID Campbell
    posted to review cell-adhesion by choonpeng on 2008-05-05 01:23:28 as read
  • Mechanical unfolding intermediates in titin modules
    Nature, Vol. 402, No. 6757. (4 November 1999), pp. 100-103.
    by Piotr E Marszalek, Hui Lu, Hongbin Li, Mariano Carrion-Vazquez, Andres F Oberhauser, Klaus Schulten, Julio M Fernandez
    posted to single-molecule-techniques force-probe-md by choonpeng on 2008-05-03 12:53:37 as **** along with 1 person and 1 group grahamc ParkinsonLab_at_MaRS
  • Pulling single molecules of titin by AFM-recent advances and physiological implications.
    Pflügers Archiv : European journal of physiology, Vol. 456, No. 1. (April 2008), pp. 101-115.
    by WA Linke, A Grützner
    posted to single-molecule-techniques review mechanotransduction by choonpeng on 2008-05-03 09:47:40 as ***
  • Protein-Protein Interaction Regulates Proteins' Mechanical Stability.
    Journal of molecular biology (28 March 2008)
    by Yi Cao, Teri Yoo, Shulin Zhuang, Hongbin Li
    posted to single-molecule-techniques protein-mechanics protein-interaction cell-adhesion by choonpeng on 2008-04-27 12:28:26 as **** along with 1 person imtechnology
  • Mechanisms for flow-enhanced cell adhesion.
    Annals of biomedical engineering, Vol. 36, No. 4. (April 2008), pp. 604-621.
    by C Zhu, T Yago, J Lou, VI Zarnitsyna, RP McEver
    posted to mechanotransduction force-probe-md cell-adhesion by choonpeng on 2008-04-23 08:34:09 as ***
  • Cellular mechanobiology and cancer metastasis.
    Birth defects research. Part C, Embryo today : reviews, Vol. 81, No. 4. (December 2007), pp. 329-343.
    by M Makale
    posted to mechanotransduction by choonpeng on 2008-04-23 05:09:43 as read
  • Gating of the mechanosensitive channel protein MscL: The interplay of membrane and protein
    Biophys. J. (22 January 2008), biophysj.107.109850.
    by Jonggu Jeon, Gregory A Voth
    posted to mechanotransduction coarse-grained by choonpeng on 2008-04-23 02:06:12 as *** along with 1 person paulschlesinger
  • The role of cell adhesion molecule in cancer progression and its application in cancer therapy.
    Acta biochimica Polonica, Vol. 51, No. 2. (2004), pp. 445-457.
    by T Okegawa, RC Pong, Y Li, JT Hsieh
    posted to cell-adhesion review by choonpeng on 2008-04-21 09:32:36 as ***
  • Cell adhesion proteins as tumor suppressors.
    The Journal of urology, Vol. 167, No. 4. (April 2002), pp. 1836-1843.
    by T Okegawa, Y Li, RC Pong, JT Hsieh
    posted to cell-adhesion review by choonpeng on 2008-04-21 09:30:04 as ****
  • Extending Bell's model: how force transducer stiffness alters measured unbinding forces and kinetics of molecular complexes
    Biophys. J. (4 January 2008), biophysj.107.114454.
    by Emily B Walton, Sunyoung Lee, Krystyn J Van Vliet
    posted to force-probe-md single-molecule-techniques by choonpeng on 2008-04-18 12:40:24 as *** along with 2 people bobturner paulschlesinger
  • Translocated Intimin Receptor and Its Chaperone Interact with ATPase of the Type III Secretion Apparatus of Enteropathogenic Escherichia coli
    J. Bacteriol., Vol. 185, No. 23. (1 December 2003), pp. 6747-6755.
    by Annick Gauthier, Brett B Finlay
    posted to ttss by choonpeng on 2008-04-14 07:45:55 as ***
  • Nanobiomechanics of proteins and biomembrane.
    Philosophical transactions of the Royal Society of London. Series B, Biological sciences (13 March 2008)
    by Atsushi Ikai
    posted to cytoskeletal-dynamics nanobiology by choonpeng on 2008-04-14 06:05:27 as ***
  • Protein targeting to ATP-dependent proteases.
    Current opinion in structural biology, Vol. 18, No. 1. (February 2008), pp. 43-51.
    by T Inobe, A Matouschek
    posted to protein-degradation review by choonpeng on 2008-04-14 02:49:54 as ****
  • Revealing the bifurcation in the unfolding pathways of GFP by using single-molecule experiments and simulations.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 51. (18 December 2007), pp. 20268-20273.
    by M Mickler, RI Dima, H Dietz, C Hyeon, D Thirumalai, M Rief
    posted to force-probe-md single-molecule-techniques by choonpeng on 2008-04-14 01:37:12 as ***
  • Mechanical unfoldons as building blocks of maltose-binding protein.
    Journal of molecular biology, Vol. 378, No. 2. (25 April 2008), pp. 447-458.
    by M Bertz, M Rief
    posted to protein-mechanics single-molecule-techniques by choonpeng on 2008-04-14 01:22:09 as ****
  • Elastic bond network model for protein unfolding mechanics.
    Physical review letters, Vol. 100, No. 9. (7 March 2008)
    by H Dietz, M Rief
    posted to protein-mechanics theoretical by choonpeng on 2008-04-14 01:21:23 as *** along with 1 person hsekiguc
  • Structure Prediction of Domain Insertion Proteins from Structures of Individual Domains
    Structure, Vol. 16, No. 4. (8 April 2008), pp. 513-527.
    by Monica Berrondo, Marc Ostermeier, Jeffrey J Gray
    posted to methodology multi-domain by choonpeng on 2008-04-10 14:33:38 as ****
  • Coarse-Grained MD Simulations of Membrane Protein-Bilayer Self-Assembly
    Structure, Vol. 16, No. 4. (8 April 2008), pp. 621-630.
    by Kathryn A Scott, Peter J Bond, Anthony Ivetac, Alan P Chetwynd, Syma Khalid, Mark S Sansom
    posted to coarse-grained self-assembly by choonpeng on 2008-04-10 14:14:47 as ***
  • Effects of surface water on protein dynamics studied by a novel coarse-grained normal mode approach.
    Biophys J (22 January 2008)
    by Lei Zhou, Steven A A Siegelbaum
    posted to coarse-grained solvent-effects by choonpeng on 2008-04-10 01:04:40 as ***
  • Precursor protein translocation by the Escherichia coli translocase is directed by the protonmotive force.
    The EMBO journal, Vol. 11, No. 3. (March 1992), pp. 847-853.
    by AJ Driessen
    posted to protein-translocation by choonpeng on 2008-04-09 09:41:23 as read
  • Delta mu H+ and ATP function at different steps of the catalytic cycle of preprotein translocase.
    Cell, Vol. 64, No. 5. (8 March 1991), pp. 927-939.
    by E Schiebel, AJ Driessen, FU Hartl, W Wickner
    posted to protein-translocation by choonpeng on 2008-04-09 09:21:50 as **** along with 1 person matzke
  • Combining experiment and simulation in protein folding: closing the gap for small model systems
    Current Opinion in Structural Biology, Vol. 18, No. 1. (February 2008), pp. 4-9.
    by Dustin R Schaeffer, Alan Fersht, Valerie Daggett
    posted to protein-folding review by choonpeng on 2008-04-07 08:11:42 as read
  • A multidomain outer membrane protein from Pasteurella multocida: Modelling and simulation studies of PmOmpA.
    Biochim Biophys Acta (16 August 2007)
    by Timothy Carpenter, Syma Khalid, Mark S P S Sansom
    posted to conformational-change multi-domain by choonpeng on 2008-04-07 02:21:34 as *** along with 1 person IrinaMoreira
  • The force exerted by the membrane potential during protein import into the mitochondrial matrix.
    Biophysical journal, Vol. 86, No. 6. (June 2004), pp. 3647-3652.
    by K Shariff, S Ghosal, A Matouschek
    posted to protein-translocation by choonpeng on 2008-04-02 02:02:02 as **
  • ATP-dependent proteases degrade their substrates by processively unraveling them from the degradation signal.
    Molecular cell, Vol. 7, No. 3. (March 2001), pp. 627-637.
    by C Lee, MP Schwartz, S Prakash, M Iwakura, A Matouschek
    posted to protein-translocation by choonpeng on 2008-04-02 01:55:25 as ***
  • Piecing together the Type III injectisome of bacterial pathogens
    Current Opinion in Structural Biology, Vol. In Press, Corrected Proof
    by Trevor F Moraes, Thomas Spreter, Natalie CJ Strynadka
    posted to review ttss by choonpeng on 2008-04-02 01:44:45 as read
  • Recent advances in implicit solvent-based methods for biomolecular simulations
    Current Opinion in Structural Biology, Vol. In Press, Corrected Proof
    by Jianhan Chen, Brooks, Jana Khandogin
    posted to implicit-solvent review by choonpeng on 2008-04-02 01:30:29 as *** along with 1 person and 1 group sobolevnrm baker-group
  • Interactions of the Pleckstrin Homology Domain with Phosphatidylinositol Phosphate and Membranes: Characterization via Molecular Dynamics Simulations
    Biochemistry (15 March 2008)
    by Emi Psachoulia, Mark S Sansom
    posted to coarse-grained signaling by choonpeng on 2008-04-01 09:23:21 as *** along with 1 person paulschlesinger
  • A structural tree for proteins containing S-like [beta]-sheets
    FEBS Letters, Vol. 437, No. 3. (23 October 1998), pp. 246-250.
    by Alexander V Efimov
    posted to folding-nucleus protein-organization by choonpeng on 2008-03-31 03:15:08 as ***
  • Allostery: Absence of a Change in Shape Does Not Imply that Allostery Is Not at Play.
    J Mol Biol (29 February 2008)
    by Chung-Jung J Tsai, Antonio Del Sol, Ruth Nussinov
    posted to allostery review by choonpeng on 2008-03-31 01:37:17 as *** along with 4 people and 1 group barry cactus sobolevnrm CameronNeylon structural_bioinformatics
  • DIVERSITY AND EVOLUTION OF PROTEIN TRANSLOCATION
    Annual Review of Microbiology, Vol. 59, No. 1. (2005), pp. 91-111.
    by Mechthild Pohlschroder, Enno Hartmann, Nicholas J Hand, Kieran Dilks, Alex Haddad
    posted to protein-translocation review by choonpeng on 2008-03-28 08:39:45 as ***
  • The rotary motor of bacterial flagella.
    Annu Rev Biochem, Vol. 72 (2003), pp. 19-54.
    by HC Berg
    posted to flagellar review by choonpeng on 2008-03-26 04:09:02 as ** along with 2 people kdesmond chrn
  • Disruption of an intermonomer salt bridge in the p53 tetramerization domain results in an increased propensity to form amyloid fibrils
    Protein Sci, Vol. 14, No. 12. (1 December 2005), pp. 2993-3003.
    by Charles Galea, Prentice Bowman, Richard W Kriwacki
    posted to protein-stability by choonpeng on 2008-03-26 03:06:16 as ***
  • H++: a server for estimating pKas and adding missing hydrogens to macromolecules.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by JC Gordon, JB Myers, T Folta, V Shoja, LS Heath, A Onufriev
    posted to web-server by choonpeng on 2008-03-26 01:43:04 as ***
  • Propagation of mechanical stress through the actin cytoskeleton toward focal adhesions: model and experiment.
    Biophys J, Vol. 94, No. 4. (15 February 2008), pp. 1470-1482.
    by R Paul, P Heil, JP Spatz, US Schwarz
    posted to cytoskeletal-dynamics by choonpeng on 2008-03-25 10:32:28 as ***
  • Energizing type III secretion machines: what is the fuel?
    Nature Structural & Molecular Biology, Vol. 15, No. 2., pp. 127-128.
    by Jorge E Galán
    posted to flagellar ttss by choonpeng on 2008-03-23 12:08:29 as read
  • Cell Adhesion (Frontiers in Molecular Biology)
    (18 April 2002)
    posted to books cell-adhesion mechanotransduction by choonpeng on 2008-03-19 01:21:07 as ****
  • Integrin-like Allosteric Properties of the Catch Bond-forming FimH Adhesin of Escherichia coli.
    J Biol Chem, Vol. 283, No. 12. (21 March 2008), pp. 7823-7833.
    by V Tchesnokova, P Aprikian, O Yakovenko, C Larock, B Kidd, V Vogel, W Thomas, E Sokurenko
    posted to mechanotransduction by choonpeng on 2008-03-18 04:14:19 as ***
  • Comparison of multiple Amber force fields and development of improved protein backbone parameters
    Proteins: Structure, Function, and Bioinformatics, Vol. 65, No. 3. (2006), pp. 712-725.
    by Viktor Hornak, Robert Abel, Asim Okur, Bentley Strockbine, Adrian Roitberg, Carlos Simmerling
    posted to methodology by choonpeng on 2008-03-15 06:29:57 as *** along with 5 people barry baaden lna allmensch kazemi
  • Gating Motions in Voltage-Gated Potassium Channels Revealed by Coarse-Grained Molecular Dynamics Simulations
    J. Phys. Chem. B, Vol. 112, No. 11. (20 March 2008), pp. 3277-3282.
    by W Treptow, SJ Marrink, M Tarek
    posted to coarse-grained signaling by choonpeng on 2008-03-13 05:54:54 as read
  • In vitro self-assembly of tailorable nanotubes from a simple protein building block.
    Proc Natl Acad Sci U S A (29 February 2008)
    by Edward R R Ballister, Angela H H Lai, Ronald N N Zuckermann, Yifan Cheng, Joseph D D Mougous
    posted to nanobiology self-assembly by choonpeng on 2008-03-12 04:16:16 as **
  • Salt bridge stability in monomeric proteins,
    Journal of Molecular Biology, Vol. 293, No. 5. (12 November 1999), pp. 1241-1255.
    by Sandeep Kumar, Ruth Nussinov
    posted to salt-bridge by choonpeng on 2008-03-10 13:16:59 as *** along with 2 people bicko onufriev
  • Impact of salt bridges on the equilibrium binding and adhesion of human CD2 and CD58.
    J Biol Chem, Vol. 282, No. 8. (23 February 2007), pp. 5589-5596.
    by MV Bayas, A Kearney, A Avramovic, PA van der Merwe, DE Leckband
    posted to cell-adhesion salt-bridge by choonpeng on 2008-03-10 02:33:18 as read
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