The Jpred 3 secondary structure prediction server Export

@article{citeulike:2868872, abstract = {Jpred (http://www.compbio.dundee.ac.uk/jpred) is a secondary structure prediction server powered by the Jnet algorithm. Jpred performs over 1000 predictions per week for users in more than 50 countries. The recently updated Jnet algorithm provides a three-state (alpha-helix, -strand and coil) prediction of secondary structure at an accuracy of 81.5\%. Given either a single protein sequence or a multiple sequence alignment, Jpred derives alignment profiles from which predictions of secondary structure and solvent accessibility are made. The predictions are presented as coloured HTML, plain text, PostScript, PDF and via the Jalview alignment editor to allow flexibility in viewing and applying the data. The new Jpred 3 server includes significant usability improvements that include clearer feedback of the progress or failure of submitted requests. Functional improvements include batch submission of sequences, summary results via email and updates to the search databases. A new software pipeline will enable Jnet/Jpred to continue to be updated in sync with major updates to SCOP and UniProt and so ensures that Jpred 3 will maintain high-accuracy predictions. 10.1093/nar/gkn238}, author = {Cole, Christian and Barber, Jonathan D. and Barton, Geoffrey J.}, citeulike-article-id = {2868872}, citeulike-linkout-0 = {http://dx.doi.org/10.1093/nar/gkn238}, citeulike-linkout-1 = {http://nar.oxfordjournals.org/content/36/suppl_2/W197.abstract}, citeulike-linkout-2 = {http://nar.oxfordjournals.org/content/36/suppl_2/W197.full.pdf}, citeulike-linkout-3 = {http://view.ncbi.nlm.nih.gov/pubmed/18463136}, citeulike-linkout-4 = {http://www.hubmed.org/display.cgi?uids=18463136}, day = {1}, doi = {10.1093/nar/gkn238}, issn = {1362-4962}, journal = {Nucl. Acids Res.}, keywords = {web-server}, month = {July}, number = {suppl\_2}, pages = {W197--W201}, posted-at = {2008-06-06 10:15:37}, priority = {2}, title = {The Jpred 3 secondary structure prediction server}, url = {http://dx.doi.org/10.1093/nar/gkn238}, volume = {36}, year = {2008} }

TY - JOUR ID - citeulike:2868872 L3 - citeulike-article-id:2868872 N2 - Jpred (http://www.compbio.dundee.ac.uk/jpred) is a secondary structure prediction server powered by the Jnet algorithm. Jpred performs over 1000 predictions per week for users in more than 50 countries. The recently updated Jnet algorithm provides a three-state (alpha-helix, -strand and coil) prediction of secondary structure at an accuracy of 81.5%. Given either a single protein sequence or a multiple sequence alignment, Jpred derives alignment profiles from which predictions of secondary structure and solvent accessibility are made. The predictions are presented as coloured HTML, plain text, PostScript, PDF and via the Jalview alignment editor to allow flexibility in viewing and applying the data. The new Jpred 3 server includes significant usability improvements that include clearer feedback of the progress or failure of submitted requests. Functional improvements include batch submission of sequences, summary results via email and updates to the search databases. A new software pipeline will enable Jnet/Jpred to continue to be updated in sync with major updates to SCOP and UniProt and so ensures that Jpred 3 will maintain high-accuracy predictions. 10.1093/nar/gkn238 IS - suppl_2 JF - Nucl. Acids Res. SN - 1362-4962 EP - W201 TI - The Jpred 3 secondary structure prediction server VL - 36 SP - W197 KW - web-server AU - Cole, Christian AU - Barber, Jonathan AU - Barton, Geoffrey PY - 2008/07/01/ UR - http://dx.doi.org/10.1093/nar/gkn238 ER -