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	Setting up and running molecular dynamics simulations of membrane proteins. [My Copy] Methods (San Diego, Calif.), Vol. 41, No. 4. (April 2007), pp. 475-488. by Christian Kandt, Walter L. Ash, D. Peter Tieleman posted to methodology transmembrane by choonpeng on 2008-12-04 02:27:31 as along with 3 people and 2 groups arnaucordomi xdeupi sobolevnrm LabCompMed baker-group
	Protein Folding and Unfolding at Atomic Resolution [My Copy] Cell, Vol. 108, No. 4. (22 February 2002), pp. 573-582. by Alan R. Fersht, Valerie Daggett posted to protein-folding by choonpeng on 2008-06-23 07:54:08 as along with 2 people flbarroso yxue
	Mechanical Unbinding of A[beta] Peptides from Amyloid Fibrils [My Copy] Journal of Molecular Biology, Vol. 373, No. 3. (26 October 2007), pp. 785-800. by Prabhu E. Raman, Takako Takeda, Valeri Barsegov, Dmitri K. Klimov posted to force-probe-md mechanical-unfolding by choonpeng on 2008-02-28 09:55:28 as
	Intersubunit linker length as a modifier of protein stability: Crystal structures and thermostability of mutant TRAP. [My Copy] Protein Sci, Vol. 17, No. 3. (March 2008), pp. 518-526. by M. Watanabe, Y. Mishima, I. Yamashita, S. Y. Park, J. R. Tame, J. G. Heddle posted to self-assembly by choonpeng on 2008-02-26 09:56:08 as
	How Well Can We Understand Large-Scale Protein Motions Using Normal Modes of Elastic Network Models? [My Copy] Biophys J, Vol. 93, No. 3. (1 August 2007), pp. 920-929. by Lei Yang, Guang Song, Robert L. L. Jernigan posted to nma by choonpeng on 2007-07-07 04:30:56 as along with 3 people and 2 groups barry aqeel willpitt structural_bioinformatics Bioinformatics
	Thermal versus mechanical unfolding of ubiquitin [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 65, No. 3. (2006), pp. 759-766. by Anders Irbäck, Simon Mitternacht posted to force-probe-md high-t-md by choonpeng on 2006-12-29 02:40:08 as
	Structure of an integrin aIIbb3 transmembrane-cytoplasmic heterocomplex provides insight into integrin activation [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 42. (20 October 2009), pp. 17729-17734. by Jun Yang, Yan-Qing Ma, Richard C. Page, Saurav Misra, Edward F. Plow, Jun Qin posted to integrin by choonpeng on 2009-10-25 13:37:29 as
	Targeting leukocyte integrins in human diseases [My Copy] J Leukoc Biol, Vol. 77, No. 2. (1 February 2005), pp. 129-140. by Karyn Yonekawa, John M. Harlan posted to integrin by choonpeng on 2009-10-22 06:35:46 as
	High-resolution cryo-EM structure of the F-actin-fimbrin/plastin ABD2 complex. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 5. (5 February 2008), pp. 1494-1498. by Vitold E. Galkin, Albina Orlova, Olga Cherepanova, Marie-Christine C. Lebart, Edward H. Egelman posted to modular cytoskeletal-dynamics by choonpeng on 2009-09-22 04:33:07 as
	Novel structural insights into F-actin-binding and novel functions of calponin homology domains. [My Copy] Current opinion in structural biology, Vol. 18, No. 6. (December 2008), pp. 702-708. by Björn Sjöblom, Jari Ylänne, Kristina Djinović-Carugo posted to review modular cytoskeletal-dynamics by choonpeng on 2009-09-17 04:10:49 as
	Free-energy landscapes of proteins in the presence and absence of force. [My Copy] The journal of physical chemistry. B, Vol. 112, No. 51. (25 December 2008), pp. 16902-16907. by Zu Thur T. Yew, Sergei Krivov, Emanuele Paci posted to theoretical mechanical-unfolding by choonpeng on 2009-09-15 09:19:14 as
	Coupled Stochastic Spatial and Non-Spatial Simulations of ErbB1 Signaling Pathways Demonstrate the Importance of Spatial Organization in Signal Transduction [My Copy] PLoS ONE, Vol. 4, No. 7. (23 July 2009), e6316. by Michelle N. Costa, Krishnan Radhakrishnan, Bridget S. Wilson, Dionisios G. Vlachos, Jeremy S. Edwards posted to signaling protein-interaction kinetics diffusion by choonpeng on 2009-08-13 06:08:02 as
	Actin restricts Fc[epsiv]RI diffusion and facilitates antigen-induced receptor immobilization [My Copy] Nat Cell Biol, Vol. 10, No. 8. (20 August 2008), pp. 955-963. by Nicholas L. Andrews, Keith A. Lidke, Janet R. Pfeiffer, et al.Alan R. Burns, Bridget S. Wilson, Janet M. Oliver, Diane S. Lidke posted to transmembrane diffusion cytoskeletal-dynamics by choonpeng on 2009-08-13 05:34:00 as
	Quantitative microscopy: protein dynamics and membrane organisation. [My Copy] Traffic (Copenhagen, Denmark), Vol. 10, No. 8. (August 2009), pp. 962-971. by D. M. Owen, D. Williamson, C. Rentero, K. Gaus posted to diffusion transmembrane by choonpeng on 2009-07-24 09:20:27 as
	Pathways and Kinetic Barriers in Mechanical Unfolding and Refolding of RNA and Proteins [My Copy] Vol. 14, No. 11. (1 November 2006), pp. 1633-1645. by Changbong Hyeon, Ruxandra I. Dima, D. Thirumalai posted to no-tag by choonpeng on 2009-05-19 03:58:17 as
	Dynamic strength of molecularly bonded surfaces. [My Copy] The Journal of chemical physics, Vol. 125, No. 19. (21 November 2006) by F. Li, D. Leckband posted to methodology protein-interaction by choonpeng on 2009-04-16 09:51:05 as
	Lipids on the move: Simulations of membrane pores, domains, stalks and curves [My Copy] Biochimica et Biophysica Acta (BBA) - Biomembranes (25 October 2008) by S. Marrink, A. Devries, D. Tieleman posted to coarse-grained self-assembly by choonpeng on 2008-12-05 05:51:17 as along with 3 people and 1 group sobolevnrm priyaps paulschlesinger baker-group
	The interplay between chemistry and mechanics in the transduction of a mechanical signal into a biochemical function [My Copy] Physics of Life Reviews, Vol. 4, No. 3. (September 2007), pp. 157-188. by Francesco Valle, Massimo Sandal, Bruno Samorì posted to mechanotransduction review by choonpeng on 2008-09-01 03:01:38 as
	The Craft of Research, Third Edition (Chicago Guides to Writing, Editing, and Publishing) [My Copy] (15 April 2008) by Wayne C. Booth, Gregory G. Colomb, Joseph M. Williams posted to books by choonpeng on 2008-08-28 13:06:43 as along with 6 people and 1 group fheintz lucybuykx lauragon oglassey 1stl derchao LInS
	Early events in protein folding: Is there something more than hydrophobic burst? [My Copy] Protein science : a publication of the Protein Society, Vol. 17, No. 8. (August 2008), pp. 1424-1433. by C. Camilloni, L. Sutto, D. Provasi, G. Tiana, R. A. Broglia posted to protein-folding by choonpeng on 2008-08-05 11:41:27 as
	Differential stability of beta-sheets and alpha-helices in beta-lactamase: a high temperature molecular dynamics study of unfolding intermediates. [My Copy] Biophys. J., Vol. 65, No. 6. (1 December 1993), pp. 2304-2312. by S. Vijayakumar, S. Vishveshwara, G. Ravishanker, D. L. Beveridge posted to high-t-md protein-folding by choonpeng on 2008-07-22 07:56:59 as
	Molecular mechanics of filamin's rod domain. [My Copy] Biophysical journal, Vol. 94, No. 3. (1 February 2008), pp. 1075-1083. by K. S. Kolahi, M. R. Mofrad posted to force-probe-md mechanotransduction by choonpeng on 2008-07-10 12:47:19 as
	Desmosome structure, composition and function [My Copy] Biochimica et Biophysica Acta (BBA) - Biomembranes In Apical Junctional Complexes Part I, Vol. 1778, No. 3. (March 2008), pp. 572-587. by David Garrod, Martyn Chidgey posted to cell-adhesion review by choonpeng on 2008-06-29 03:57:42 as
	Structural studies on desmosomes. [My Copy] Biochemical Society transactions, Vol. 36, No. Pt 2. (April 2008), pp. 181-187. by A. Al-Amoudi, A. S. Frangakis posted to cell-adhesion by choonpeng on 2008-06-29 03:55:14 as
	Indirect Role of Ca2+ in the Assembly of Extracelluar Matrix Proteins [My Copy] Biophys. J. (21 March 2008), biophysj.108.129106. by Jiankuai Diao, Emad Tajkhorshid posted to force-probe-md by choonpeng on 2008-06-20 04:06:40 as along with 1 person paulschlesinger
	Protein unfolding and refolding under force: methodologies for nanomechanics. [My Copy] Chemphyschem : a European journal of chemical physics and physical chemistry, Vol. 6, No. 1. (January 2005), pp. 29-34. by B. Samorì, G. Zuccheri, R. Baschieri posted to mechanical-unfolding protein-folding review single-molecule-methods by choonpeng on 2008-06-02 02:38:32 as
	Mechanical unfolding intermediates in titin modules [My Copy] Nature, Vol. 402, No. 6757. (04 November 1999), pp. 100-103. by Piotr E. Marszalek, Hui Lu, Hongbin Li, et al.Mariano Carrion-Vazquez, Andres F. Oberhauser, Klaus Schulten, Julio M. Fernandez posted to force-probe-md single-molecule-methods by choonpeng on 2008-05-03 12:53:37 as along with 2 people dsmueller grahamc
	Protein-Protein Interaction Regulates Proteins' Mechanical Stability. [My Copy] Journal of molecular biology (28 March 2008) by Yi Cao, Teri Yoo, Shulin Zhuang, Hongbin Li posted to cell-adhesion protein-interaction protein-mechanics single-molecule-methods by choonpeng on 2008-04-27 12:28:26 as along with 2 people devinli imtechnology
	Cell adhesion proteins as tumor suppressors. [My Copy] The Journal of urology, Vol. 167, No. 4. (April 2002), pp. 1836-1843. by T. Okegawa, Y. Li, R. C. Pong, J. T. Hsieh posted to cell-adhesion review by choonpeng on 2008-04-21 09:30:04 as
	Protein targeting to ATP-dependent proteases. [My Copy] Current opinion in structural biology, Vol. 18, No. 1. (February 2008), pp. 43-51. by T. Inobe, A. Matouschek posted to protein-degradation review by choonpeng on 2008-04-14 02:49:54 as along with 1 person guhjy
	Mechanical unfoldons as building blocks of maltose-binding protein. [My Copy] Journal of molecular biology, Vol. 378, No. 2. (25 April 2008), pp. 447-458. by M. Bertz, M. Rief posted to protein-mechanics single-molecule-methods by choonpeng on 2008-04-14 01:22:09 as
	Structure Prediction of Domain Insertion Proteins from Structures of Individual Domains [My Copy] Structure, Vol. 16, No. 4. (8 April 2008), pp. 513-527. by Monica Berrondo, Marc Ostermeier, Jeffrey J. Gray posted to methodology protein-domains by choonpeng on 2008-04-10 14:33:38 as along with 2 people zwang raik
	Delta mu H+ and ATP function at different steps of the catalytic cycle of preprotein translocase. [My Copy] Cell, Vol. 64, No. 5. (8 March 1991), pp. 927-939. by E. Schiebel, A. J. Driessen, F. U. Hartl, W. Wickner posted to protein-translocation by choonpeng on 2008-04-09 09:21:50 as along with 1 person matzke
	Cell Adhesion (Frontiers in Molecular Biology) [My Copy] (18 April 2002) posted to books cell-adhesion mechanotransduction by choonpeng on 2008-03-19 01:21:07 as
	Multi-scale computational modelling in biology and physiology [My Copy] Progress in Biophysics and Molecular Biology In Cardiovascular Physiome, Vol. 96, No. 1-3. (January 2008), pp. 60-89. by James Southern, Joe Pitt-Francis, Jonathan Whiteley, et al.Daniel Stokeley, Hiromichi Kobashi, Ross Nobes, Yoshimasa Kadooka, David Gavaghan posted to multi-scale by choonpeng on 2008-02-27 01:44:32 as along with 5 people Dangerfc paulschlesinger elorenz acaiazzo vgurev
	Implicit modeling of nonpolar solvation for simulating protein folding and conformational transitions. [My Copy] Physical chemistry chemical physics : PCCP, Vol. 10, No. 4. (28 January 2008), pp. 471-481. by J. Chen, C. L. Brooks posted to implicit-solvent solvent-effects by choonpeng on 2008-02-26 02:07:23 as along with 2 people yxue flbarroso
	Conformational Sampling with Implicit Solvent Models: Application to the PHF6 Peptide in Tau Protein [My Copy] Biophysical Journal, Vol. 92, No. 1. (01 January 2007), pp. 34-45. by A. Huang, C. Stultz posted to implicit-solvent by choonpeng on 2008-02-26 01:32:51 as along with 1 person flbarroso
	Hierarchical analysis of conformational dynamics in biomolecules: transition networks of metastable states. [My Copy] J Chem Phys, Vol. 126, No. 15. (21 April 2007) by F. Noé, I. Horenko, C. Schütte, J. C. Smith posted to ensemble by choonpeng on 2008-01-25 08:42:04 as along with 3 people barmak7282 Diego_Prada toerst
	Unconventional Secretory Routes: Direct Protein Export Across the Plasma Membrane of Mammalian Cells [My Copy] Traffic, Vol. 6, No. 8. (August 2005), pp. 607-614. by Walter Nickel posted to protein-secretion review by choonpeng on 2008-01-22 05:37:33 as along with 2 people taenneken kreibich
	Unconventional protein secretion: membrane translocation of FGF-2 does not require protein unfolding. [My Copy] J Cell Sci, Vol. 117, No. Pt 9. (1 April 2004), pp. 1727-1736. by R. Backhaus, C. Zehe, S. Wegehingel, A. Kehlenbach, B. Schwappach, W. Nickel posted to protein-secretion by choonpeng on 2008-01-22 05:33:25 as
	Computer simulation of I27 translocation through ClpY reveals a critical role of protein mechanical strength and local stability. [My Copy] Conf Proc IEEE Eng Med Biol Soc, Vol. 1 (2007), pp. 1213-1216. by G. Feng, H. Lu posted to force-probe-md protein-translocation by choonpeng on 2008-01-22 03:05:22 as
	Translational Mini-Review Series on Complement Factor H: Structural and functional correlations for factor H [My Copy] Clinical & Experimental Immunology, Vol. 151, No. 1. (January 2008), pp. 14-24. by Schmidt, C. Q., Herbert, et al. A. P., Hocking, H. G., Uhrin, D., Barlow, P. N. posted to modular review by choonpeng on 2008-01-03 12:58:23 as
	Protein mechanics: a route from structure to function. [My Copy] J Biosci, Vol. 32, No. 5. (August 2007), pp. 891-898. by R. Lavery, S. Sacquin-Mora posted to protein-mechanics review by choonpeng on 2007-12-27 03:52:05 as along with 1 person Ema
	Co- and post-translational translocation through the protein-conducting channel: analogous mechanisms at work? [My Copy] Nature Structural & Molecular Biology, Vol. 13, No. 11. (03 November 2006), pp. 957-964. by Kakoli Mitra, Joachim Frank, Arnold Driessen posted to protein-translocation by choonpeng on 2007-12-27 02:32:47 as
	Coiled-coil nanomechanics and uncoiling and unfolding of the superhelix and alpha-helices of myosin. [My Copy] Biophys J, Vol. 90, No. 8. (15 April 2006), pp. 2852-2866. by D. D. Root, V. K. Yadavalli, J. G. Forbes, K. Wang posted to single-molecule-methods by choonpeng on 2007-12-23 13:23:30 as
	Solution Conformation of Wild-Type and Mutant IgG3 and IgG4 Immunoglobulins Using Crystallohydrodynamics: Possible Implications for Complement Activation. [My Copy] Biophys J, Vol. 93, No. 11. (1 December 2007), pp. 3733-3744. by Y. Lu, S. E. Harding, T. E. Michaelsen, et al.E. Longman, K. G. Davis, A. Ortega, J. G. Grossmann, I. Sandlie, J. García de la Torre posted to modular by choonpeng on 2007-12-18 05:10:38 as
	The Regulatory SCR-1/5 and Cell Surface-binding SCR-16/20 Fragments of Factor H Reveal Partially Folded-back Solution Structures and Different Self-associative Properties [My Copy] Journal of Molecular Biology, Vol. 375, No. 1. (4 January 2008), pp. 80-101. by Azubuike I. Okemefuna, Hannah E. Gilbert, Kim M. Griggs, Rebecca J. Ormsby, David L. Gordon, Stephen J. Perkins posted to modular by choonpeng on 2007-12-06 01:06:11 as
	Stretching to understand proteins - a survey of the protein data bank. [My Copy] Biophysical journal, Vol. 94, No. 1. (1 January 2008), pp. 6-13. by Joanna I. Sułkowska, Marek Cieplak posted to coarse-grained force-probe-md by choonpeng on 2007-11-06 10:09:27 as along with 2 people edws paulschlesinger
	Three-dimensional structure of a complement control protein module in solution. [My Copy] J Mol Biol, Vol. 219, No. 4. (20 June 1991), pp. 717-725. by D. G. Norman, P. N. Barlow, M. Baron, A. J. Day, R. B. Sim, I. D. Campbell posted to modular by choonpeng on 2007-10-11 09:49:33 as
	Crystal structure of a complement control protein that regulates both pathways of complement activation and binds heparan sulfate proteoglycans. [My Copy] Cell, Vol. 104, No. 2. (26 January 2001), pp. 301-311. by K. H. Murthy, S. A. Smith, V. K. Ganesh, et al.K. W. Judge, N. Mullin, P. N. Barlow, C. M. Ogata, G. J. Kotwal posted to modular by choonpeng on 2007-10-11 07:54:48 as

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protein-folding	177
modular	117
coarse-grained	111
review	90
protein-interaction	87
protein-domains	83
force-probe-md	64
mechanotransduction	63
flagellar	61
methodology	52
protein-translocation	48
single-molecule-methods	48
allostery	44
cell-adhesion	41
signaling	41
high-t-md	40
ttss	29
nma	28
mechanical-unfolding	26
transmembrane	26
integrin	25
solvent-effects	24
protein-mechanics	22
books	21
protein-stability	19
pca	18
chaperone	16
cytoskeletal-dynamics	16
folding-nucleus	16
cooperativity	15
folding-intermediate	15
web-server	15
go-model	14
bioinformatics	13
ensemble	12
implicit-solvent	12
theoretical	11
software	10
self-assembly	9
denatured-state	8
crowding	7
diffusion	7
multi-scale	7
protein-degradation	7
ig-like	6
kinetics	6
computer-programming	5
protein-secretion	5
salt-bridge	5
protein-dynamics	4
structure-validation	3
science-presentation	1
science-writing	1

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