choonpeng's allostery [45 articles] Export

Recent papers added to choonpeng's library classified by the tag allostery. You can also see everyone's allostery.

	Reassessing a sparse energetic network within a single protein domain [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 12. (25 March 2008), pp. 4679-4684. by Celestine N. Chi, Lisa Elfström, Yao Shi, Tord Snäll, Åke Engström, Per Jemth posted to allostery by choonpeng on 2009-11-12 03:26:14 as along with 6 people and 1 group barry apaydin cjeans cactus sunhwan sobolevnrm baker-group
	Allostery: Absence of a Change in Shape Does Not Imply that Allostery Is Not at Play. [My Copy] J Mol Biol (29 February 2008) by Chung-Jung J. Tsai, Antonio Del Sol, Ruth Nussinov posted to allostery review by choonpeng on 2008-03-31 01:37:17 as along with 7 people and 3 groups pablocarb barry cactus sobolevnrm CameronNeylon higueruelo cchang structural_bioinformatics McCammon Chang group
	Predicting Allosteric Communication in Myosin via a Pathway ofConserved Residues [My Copy] Journal of Molecular Biology, Vol. In Press, Accepted Manuscript by Susan Tang, Jung-Chi Liao, Alexander R. Dunn, Russ B. Altman, James A. Spudich, Jeanette P. Schmidt posted to allostery bioinformatics signaling by choonpeng on 2007-10-30 11:40:13 as along with 5 people and 2 groups barry cactus sobolevnrm jlh64 melting structural_bioinformatics baker-group
	Directed evolution to probe protein allostery and integrin I domains of 200,000-fold higher affinity. [My Copy] Proc Natl Acad Sci U S A (4 April 2006) by Moonsoo Jin, Gang Song, Christopher V V. Carman, et al.Yong-Sung S. Kim, Nathan S S. Astrof, Motomu Shimaoka, Dane K K. Wittrup, Timothy A A. Springer posted to allostery integrin mechanotransduction by choonpeng on 2007-07-11 03:53:44 as along with 1 person rklancer
	Using molecular dynamics to map interaction networks in an aminoacyl-tRNA synthetase [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by Michael E. Budiman, Michael H. Knaggs, Jacquelyn S. Fetrow, Rebecca W. Alexander posted to allostery by choonpeng on 2007-06-03 09:10:20 as
	Anatomy of a structural pathway for activation of the catalytic domain of Src kinase Hck [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 67, No. 4. (1 June 2007), pp. 1096-1112. by Nilesh K. Banavali, Benoît Roux posted to allostery signaling by choonpeng on 2007-05-21 07:26:42 as along with 3 people bmduggan allmensch ruvido
	Intrinsic disorder as a mechanism to optimize allosteric coupling in proteins [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 20. (15 May 2007), pp. 8311-8315. by Vincent J. Hilser, E. Brad Thompson posted to allostery signaling by choonpeng on 2007-05-16 00:55:20 as along with 6 people and 3 groups guhjy apaydin barry cursonivel1 cactus allmensch structural_bioinformatics Bioinformatics cursonivel1
	Crystal Structure and Allosteric Regulation of the Cytoplasmic Escherichia coli l-Asparaginase I [My Copy] Journal of Molecular Biology, Vol. 369, No. 3. (8 June 2007), pp. 794-811. by Mi-Kyung Yun, Amanda Nourse, Stephen W. White, Charles O. Rock, Richard J. Heath posted to allostery by choonpeng on 2007-05-13 09:47:14 as
	Mapping allosteric connections from the receptor to the nucleotide-binding pocket of heterotrimeric G proteins. [My Copy] Proc Natl Acad Sci U S A (26 April 2007) by William M M. Oldham, Ned Van Eps, Anita M M. Preininger, Wayne L L. Hubbell, Heidi E E. Hamm posted to allostery by choonpeng on 2007-05-09 02:32:20 as along with 2 people and 1 group xdeupi laurabailey LabCompMed
	iRED Analysis of TAR RNA Reveals Motional Coupling, Long-Range Correlations, and a Dynamical Hinge. [My Copy] Biophys J (20 April 2007) by Catherine Musselman, Hashim M M. Al-Hashimi, Ioan Andricioaei posted to allostery by choonpeng on 2007-05-04 16:42:02 as
	The Linker between SH2 and Kinase Domains Positively Regulates Catalysis of the Tec Family Kinases. [My Copy] Biochemistry (11 April 2007) by Raji E. Joseph, Lie Min, Amy H. Andreotti posted to allostery protein-domains by choonpeng on 2007-05-01 10:41:03 as
	Versatile retargeting of SH3 domain binding by modification of non-conserved loop residues [My Copy] FEBS Letters, Vol. 581, No. 9. (1 May 2007), pp. 1735-1741. by Marita Hiipakka, Kalle Saksela posted to allostery signaling by choonpeng on 2007-04-22 12:17:18 as
	Energetics of peptide recognition by the second PDZ domain of human protein tyrosine phosphatase 1E. [My Copy] Biochemistry, Vol. 46, No. 4. (30 January 2007), pp. 1064-1078. by S. Milev, S. Bjelić, O. Georgiev, I. Jelesarov posted to allostery by choonpeng on 2007-04-20 07:03:27 as
	Quantifying allosteric effects in proteins [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 59, No. 4. (01 June 2005), pp. 697-707. by Dengming Ming, Michael E. Wall posted to allostery by choonpeng on 2007-04-06 05:50:30 as along with 6 people edws apaydin lna aqeel ruvido cactus
	Allosteric control through mechanical tension. [My Copy] Phys Rev Lett, Vol. 95, No. 7. (12 August 2005) by B. Choi, G. Zocchi, Y. Wu, S. Chan, L. Jeanne Perry posted to allostery by choonpeng on 2007-04-06 05:48:47 as along with 1 person lna
	Local motions in a benchmark of allosteric proteins. [My Copy] Proteins (12 February 2007) by Michael D D. Daily, Jeffrey J J. Gray posted to allostery by choonpeng on 2007-03-27 01:44:30 as along with 4 people and 1 group anuragsethi allmensch lna Einat structural_bioinformatics
	Structure of the Redox Sensor Domain of Azotobacter vinelandii NifL at Atomic Resolution: Signaling, Dimerization, and Mechanism, [My Copy] Biochemistry, Vol. 46, No. 12. (27 March 2007), pp. 3614-3623. by J. Key, M. Hefti, E. B. Purcell, K. Moffat posted to allostery signaling by choonpeng on 2007-03-24 07:20:56 as along with 1 person and 2 groups jwm Radiation_Damage Stressosome
	Markov propagation of allosteric effects in biomolecular systems: application to GroEL-GroES. [My Copy] Mol Syst Biol, Vol. 2 (2006) by C. Chennubhotla, I. Bahar posted to allostery nma by choonpeng on 2007-03-23 06:44:12 as along with 1 person lna
	Ligand-dependent dynamics and intramolecular signaling in a PDZ domain. [My Copy] J Mol Biol, Vol. 335, No. 4. (23 January 2004), pp. 1105-1115. by E. J. Fuentes, C. J. Der, A. L. Lee posted to allostery signaling by choonpeng on 2007-03-19 07:14:56 as along with 2 people and 1 group lna pdelosri EPFL_SB_ITP_LBS
	Evolutionarily Conserved Pathways of Energetic Connectivity in Protein Families [My Copy] Science, Vol. 286, No. 5438. (8 October 1999), pp. 295-299. by Steve W. Lockless, Rama Ranganathan posted to allostery bioinformatics cooperativity by choonpeng on 2007-03-19 05:21:29 as along with 17 people and 6 groups mgomes qluo stevanspringer Einat marcius eckart_bindewald analogAI dgront caporaso sriram_s Haggan rabio mottonen zambujo mingzhi bethbromley ca3295 Marcotte_Lab structural_bioinformatics FAB-lab biomedical-nlp BioinfoCIPF SGU-CIPF
	Functional residues serve a dominant role in mediating the cooperativity of the protein ensemble [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 11. (13 March 2007), pp. 4347-4352. by Tong Liu, Steven T. Whitten, Vincent J. Hilser posted to allostery cooperativity by choonpeng on 2007-03-19 05:18:40 as along with 3 people qluo lna mingzhi
	Determination of network of residues that regulate allostery in protein families using sequence analysis. [My Copy] Protein Sci, Vol. 15, No. 2. (February 2006), pp. 258-268. by R. I. Dima, D. Thirumalai posted to allostery bioinformatics by choonpeng on 2007-03-19 05:15:44 as along with 6 people and 1 group apaydin xdeupi gbart nirfriedman tale mingzhi LabCompMed
	Insights into allosteric control of vinculin function from its large scale conformational dynamics. [My Copy] J Biol Chem, Vol. 281, No. 39. (29 September 2006), pp. 29148-29154. by Y. Chen, N. V. Dokholyan posted to allostery coarse-grained by choonpeng on 2007-03-18 12:20:18 as
	Evolutionarily conserved networks of residues mediate allosteric communication in proteins [My Copy] Nature Structural & Molecular Biology, Vol. 10, No. 1. (16 December 2002), pp. 59-69. by Gurol M. Suel, Steve W. Lockless, Mark A. Wall, Rama Ranganathan posted to allostery by choonpeng on 2007-03-01 21:58:10 as along with 20 people and 3 groups mgomes qluo arjun_citeulike RebeccaHamer ynaito lna dimka marcius eckart_bindewald gbart analogAI nirfriedman dgront caporaso efge carlescorbi mingzhi yalexeev weisblum ca3295 biomedical-nlp BioinfoCIPF SGU-CIPF
	A systems biology perspective on protein structural dynamics and signal transduction. [My Copy] Curr Opin Struct Biol, Vol. 15, No. 1. (February 2005), pp. 23-30. by F. Rousseau, J. Schymkowitz posted to allostery cooperativity go-model by choonpeng on 2007-03-01 21:56:14 as along with 6 people lna alexg eweaver dgront ruvido jlh64
	Conformational Transitions of Adenylate Kinase: Switching by Cracking [My Copy] Journal of Molecular Biology, Vol. 366, No. 5. (9 March 2007), pp. 1661-1671. by Paul C. Whitford, Osamu Miyashita, Yaakov Levy, Jose N. Onuchic posted to coarse-grained allostery protein-domains by choonpeng on 2007-02-12 03:21:55 as along with 1 person operon
	Domains, Motifs, and Scaffolds: The Role of Modular Interactions in the Evolution and Wiring of Cell Signaling Circuits [My Copy] Annual Review of Biochemistry, Vol. 75, No. 1. (17 March 2006), pp. 655-680. by Roby P. Bhattacharyya, Attila Reményi, Brian J. Yeh, Wendell A. Lim posted to review modular allostery by choonpeng on 2007-02-04 08:53:18 as along with 14 people dfdong chica tomhebbron Scis0000002 mmcclean laurabailey rklancer matzke imouthesmp koller cjeans melting carlk gulkur
	Allosteric Regulation of Hsp70 Chaperones Involves a Conserved Interdomain Linker [My Copy] J. Biol. Chem., Vol. 281, No. 50. (15 December 2006), pp. 38705-38711. by Markus Vogel, Matthias P. Mayer, Bernd Bukau posted to chaperone allostery protein-domains by choonpeng on 2007-01-27 07:54:38 as
	Two-way Interdomain Signal Transduction in Tetracycline Repressor [My Copy] Journal of Molecular Biology, Vol. 361, No. 2. (11 August 2006), pp. 382-389. by Sean E. Reichheld, Alan R. Davidson posted to allostery protein-domains by choonpeng on 2007-01-27 07:46:22 as
	The modular logic of signaling proteins: building allosteric switches from simple binding domains [My Copy] Current Opinion in Structural Biology, Vol. 12, No. 1. (1 February 2002), pp. 61-68. by Wendell A. Lim posted to modular allostery protein-domains by choonpeng on 2007-01-24 10:36:51 as
	Crystal Structure of the Tyrosine Phosphatase SHP-2 [My Copy] Cell, Vol. 92, No. 4. (20 February 1998), pp. 441-450. by Peter Hof, Scott Pluskey, Sirano Dhe-Paganon, Michael J. Eck, Steven E. Shoelson posted to allostery protein-domains by choonpeng on 2007-01-19 06:44:38 as
	The change of protein intradomain mobility on ligand binding: is it a commonly observed phenomenon? [My Copy] Biophys J, Vol. 91, No. 8. (15 October 2006), pp. 3002-3013. by S. O. Yesylevskyy, V. N. Kharkyanen, A. P. Demchenko posted to allostery protein-interaction by choonpeng on 2006-12-29 01:36:25 as
	Demonstration of Long-Range Interactions in a PDZ Domain by NMR, Kinetics, and Protein Engineering [My Copy] Structure, Vol. 14, No. 12. (December 2006), pp. 1801-1809. by Stefano Gianni, Tine Walma, Alessandro Arcovito, et al.Nicoletta Calosci, Andrea Bellelli, Ake Engstrom, Carlo Travaglini-Allocatelli, Maurizio Brunori, Per Jemth, Geerten W. Vuister posted to allostery protein-domains by choonpeng on 2006-12-20 03:48:37 as along with 2 people pablocarb jlh64
	Networks for the allosteric control of protein kinases [My Copy] Current Opinion in Structural Biology In Catalysis and regulation / Proteins, Vol. 16, No. 6. (December 2006), pp. 686-692. by Zhengshuang Shi, Katheryn A. Resing, Natalie G. Ahn posted to allostery protein-interaction by choonpeng on 2006-12-02 11:39:25 as along with 2 people ruvido lna
	Protein-protein interactions in the allosteric regulation of protein kinases [My Copy] Current Opinion in Structural Biology In Catalysis and regulation / Proteins, Vol. 16, No. 6. (December 2006), pp. 702-709. by Patricia Pellicena, John Kuriyan posted to allostery protein-interaction by choonpeng on 2006-12-02 11:36:19 as along with 3 people ubcg08l lna higueruelo
	Reconciling the ldquooldrdquo and ldquonewrdquo views of protein allostery: A molecular simulation study of chemotaxis Y protein (CheY) [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 63, No. 4. (1 June 2006), pp. 846-867. by Mark S. Formaneck, Liang Ma, Qiang Cui posted to allostery by choonpeng on 2006-11-16 02:37:32 as along with 3 people victorclaessen lna jjray
	Interpreting Correlated Motions Using Normal Mode Analysis [My Copy] Structure, Vol. 14, No. 11. (November 2006), pp. 1647-1653. by Adam W. Van Wynsberghe, Qiang Cui posted to allostery nma by choonpeng on 2006-11-16 01:52:53 as along with 2 people aqeel gane5h
	Complement and the Multifaceted Functions of VWA and Integrin I Domains [My Copy] Structure, Vol. 14, No. 11. (November 2006), pp. 1611-1616. by Timothy A. Springer posted to allostery protein-domains by choonpeng on 2006-11-16 01:37:47 as
	Evaluation of Energetic and Dynamic Coupling Networks in a PDZ Domain Protein [My Copy] Journal of Molecular Biology, Vol. 364, No. 3. (1 December 2006), pp. 337-351. by Ernesto J. Fuentes, Steven A. Gilmore, Randall V. Mauldin, Andrew L. Lee posted to allostery by choonpeng on 2006-11-16 00:47:42 as along with 2 people and 2 groups barry lna structural_bioinformatics Bioinformatics
	Mutations in ?-helical solvent-exposed sites of eglin c have long-range effects: Evidence from molecular dynamics simulations [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 63, No. 2. (2006), pp. 356-372. by Jacquelyn S. Fetrow, Stacy T. Knutson, Marshall H. Edgell posted to allostery by choonpeng on 2006-10-01 09:56:05 as along with 1 person lna
	Is allostery an intrinsic property of all dynamic proteins? [My Copy] Proteins, Vol. 57, No. 3. (15 November 2004), pp. 433-443. by K. Gunasekaran, B. Ma, R. Nussinov posted to allostery ensemble by choonpeng on 2006-10-01 09:54:39 as along with 7 people victorclaessen richardbickerton lna gbart leemary4 ruvido cactus
	Dynamic coupling and allosteric behavior in a nonallosteric protein. [My Copy] Biochemistry, Vol. 45, No. 25. (27 June 2006), pp. 7693-7699. by M. W. Clarkson, S. A. Gilmore, M. H. Edgell, A. L. Lee posted to allostery by choonpeng on 2006-09-30 14:17:10 as along with 3 people pablocarb lna cactus
	Coupling of global and local vibrational modes in dynamic allostery of proteins. [My Copy] Biophys J (23 June 2006) by Rhoda J J. Hawkins, Tom C B C. McLeish posted to allostery theoretical by choonpeng on 2006-09-13 10:02:41 as along with 2 people lna higueruelo
	Dynamically driven protein allostery. [My Copy] Nat Struct Mol Biol (13 August 2006) by Nataliya Popovych, Shangjin Sun, Richard H H. Ebright, Charalampos G G. Kalodimos posted to allostery by choonpeng on 2006-09-08 01:37:02 as along with 3 people lna aqeel mottonen
	The changing landscape of protein allostery. [My Copy] Curr Opin Struct Biol, Vol. 16, No. 1. (February 2006), pp. 102-108. by J. F. Swain, L. M. Gierasch posted to allostery by choonpeng on 2006-08-29 08:13:39 as along with 4 people nigham lna ruvido mottonen

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protein-folding	177
modular	117
coarse-grained	111
review	90
protein-interaction	87
protein-domains	83
force-probe-md	64
mechanotransduction	63
flagellar	61
methodology	52
protein-translocation	48
single-molecule-methods	48
allostery	45
cell-adhesion	43
signaling	43
high-t-md	40
ttss	29
nma	28
transmembrane	27
integrin	26
mechanical-unfolding	26
solvent-effects	24
protein-mechanics	22
books	21
protein-stability	19
pca	18
chaperone	16
cytoskeletal-dynamics	16
folding-nucleus	16
cooperativity	15
folding-intermediate	15
web-server	15
go-model	14
bioinformatics	13
ensemble	12
implicit-solvent	12
theoretical	11
software	10
self-assembly	9
denatured-state	8
crowding	7
diffusion	7
multi-scale	7
protein-degradation	7
ig-like	6
kinetics	6
computer-programming	5
protein-secretion	5
salt-bridge	5
protein-dynamics	4
structure-validation	3
science-presentation	1
science-writing	1

choonpeng's allostery [45 articles] Export

choonpeng's tags