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	Solvent-Free Lipid Bilayer Model Using Multiscale Coarse-Graining [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 13. (2 April 2009), pp. 4443-4455. by Sergei Izvekov, Gregory A. Voth posted to coarse-grained methodology transmembrane by choonpeng on 2009-07-27 11:43:15 as along with 3 people and 1 group flbarroso agrossfield sobolevnrm baker-group
	Influence of macromolecular crowding on protein-protein association rates - a Brownian Dynamics study [My Copy] Biophys. J. (29 August 2008), biophysj.108.136291. by Grzegorz A. Wieczorek, Piotr Zielenkiewicz posted to coarse-grained crowding by choonpeng on 2009-05-25 09:32:02 as along with 3 people itmeson ocs paulschlesinger
	Predicting the order in which contacts are broken during single molecule protein stretching experiments [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 71, No. 1. (2008), pp. 45-60. by Joanna I. Su&lstrok;kowska, Andrzej Kloczkowski, Taner Z. Sen, Marek Cieplak, Robert L. Jernigan posted to coarse-grained mechanical-unfolding by choonpeng on 2009-05-19 04:17:01 as along with 1 person edws
	Probing the origin of tubulin rigidity with molecular simulations. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (7 October 2008) by Ruxandra I I. Dima, Harshad Joshi posted to coarse-grained mechanical-unfolding by choonpeng on 2009-04-27 08:07:34 as along with 2 people and 1 group kshundyak barry McCammon
	Cluster formation of transmembrane proteins due to hydrophobic mismatching. [My Copy] Physical review letters, Vol. 101, No. 12. (19 September 2008) by U. Schmidt, G. Guigas, M. Weiss posted to coarse-grained transmembrane by choonpeng on 2008-12-29 08:44:28 as
	Molecular simulations of lipid mediated protein-protein interactions [My Copy] Biophys. J. (16 May 2008), biophysj.107.124164. by Frederick J. de Meyer, Maddalena Venturoli, Berend Smit posted to coarse-grained protein-interaction transmembrane by choonpeng on 2008-12-18 05:31:57 as along with 3 people and 1 group oteri paulschlesinger agrossfield Structural Biology Group TorVergata
	Lipids on the move: Simulations of membrane pores, domains, stalks and curves [My Copy] Biochimica et Biophysica Acta (BBA) - Biomembranes (25 October 2008) by S. Marrink, A. Devries, D. Tieleman posted to coarse-grained self-assembly by choonpeng on 2008-12-05 05:51:17 as along with 3 people and 1 group sobolevnrm priyaps paulschlesinger baker-group
	A Systematic Methodology for Defining Coarse-Grained Sites in Large Biomolecules [My Copy] Biophysical Journal, Vol. 95, No. 11. (01 December 2008), pp. 5073-5083. by Z. Zhang, L. Lu, W. Noid, V. Krishna, J. Pfaendtner, G. Voth posted to coarse-grained methodology pca by choonpeng on 2008-11-27 08:53:06 as along with 5 people and 2 groups okapi barry sobolevnrm agrossfield paulschlesinger structural_bioinformatics McCammon
	Helix-Helix Interactions in Membrane Proteins: Coarse-Grained Simulations of Glycophorin A Helix Dimerization [My Copy] Biochemistry, Vol. 47, No. 40. (7 October 2008), pp. 10503-10512. by Emi Psachoulia, Philip W. Fowler, Peter J. Bond, Mark S. Sansom posted to coarse-grained transmembrane by choonpeng on 2008-11-26 02:42:51 as along with 3 people jonathancooper agrossfield paulschlesinger
	Gating Mechanisms of Mechanosensitive Channels of Large Conductance, I: A Continuum Mechanics-Based Hierarchical Framework [My Copy] Biophys. J., Vol. 95, No. 2. (15 July 2008), pp. 563-580. by Xi Chen, Qiang Cui, Yuye Tang, Jejoong Yoo, Arun Yethiraj posted to coarse-grained multi-scale by choonpeng on 2008-08-03 04:36:05 as along with 1 person agrossfield
	Coarse-Grained Biomolecular Simulation with REACH: Realistic Extension Algorithm via Covariance Hessian☆ [My Copy] Biophysical Journal, Vol. 93, No. 10. (15 November 2007), pp. 3460-3469. by K. Moritsugu, J. Smith posted to coarse-grained by choonpeng on 2008-07-30 13:49:05 as along with 4 people and 1 group Diego_Prada aqeel hmk sobolevnrm baker-group
	REACH Coarse-Grained Biomolecular Simulation: Transferability between Different Protein Structural Classes [My Copy] Biophys. J. (9 May 2008), biophysj.108.131714. by Kei Moritsugu, Jeremy C. Smith posted to coarse-grained by choonpeng on 2008-07-30 02:54:35 as along with 7 people and 2 groups barry sobolevnrm A_Coletta_Thesis paulschlesinger aqeel jmccammon rok baker-group McCammon
	Tubulin: from atomistic structure to supramolecular mechanical properties [My Copy] Journal of Materials Science, Vol. 42, No. 21. (November 2007), pp. 8864-8872. by Marco Deriu, Søren Enemark, Monica Soncini, Franco Montevecchi, Alberto Redaelli posted to coarse-grained cytoskeletal-dynamics multi-scale by choonpeng on 2008-07-01 01:42:01 as
	Allostery of actin filaments: molecular dynamics simulations and coarse-grained analysis. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 37. (13 September 2005), pp. 13111-13116. by J. W. Chu, G. A. Voth posted to coarse-grained by choonpeng on 2008-06-29 03:31:28 as along with 2 people cactus BragilMassoud
	On the Octagonal Structure of the Nuclear Pore Complex: Insights from Coarse-Grained Models. [My Copy] Biophysical journal (16 May 2008) by Christopher B B. Wolf, Mohammad R K R. Mofrad posted to coarse-grained by choonpeng on 2008-06-27 09:13:07 as
	Gating of the mechanosensitive channel protein MscL: The interplay of membrane and protein [My Copy] Biophys. J. (22 January 2008), biophysj.107.109850. by Jonggu Jeon, Gregory A. Voth posted to coarse-grained mechanotransduction by choonpeng on 2008-04-23 02:06:12 as along with 1 person paulschlesinger
	Coarse-Grained MD Simulations of Membrane Protein-Bilayer Self-Assembly [My Copy] Structure, Vol. 16, No. 4. (8 April 2008), pp. 621-630. by Kathryn A. Scott, Peter J. Bond, Anthony Ivetac, Alan P. Chetwynd, Syma Khalid, Mark S. Sansom posted to coarse-grained self-assembly by choonpeng on 2008-04-10 14:14:47 as along with 2 people and 1 group sobolevnrm sebk baker-group
	Effects of surface water on protein dynamics studied by a novel coarse-grained normal mode approach. [My Copy] Biophysical journal, Vol. 94, No. 9. (1 May 2008), pp. 3461-3474. by L. Zhou, S. A. Siegelbaum posted to coarse-grained solvent-effects by choonpeng on 2008-04-10 01:04:40 as along with 3 people and 1 group saravan flbarroso joseph_x_zhou protein_Dyn
	Interactions of the Pleckstrin Homology Domain with Phosphatidylinositol Phosphate and Membranes: Characterization via Molecular Dynamics Simulations [My Copy] Biochemistry (15 March 2008) by Emi Psachoulia, Mark S. Sansom posted to coarse-grained signaling by choonpeng on 2008-04-01 09:23:21 as along with 2 people dimka paulschlesinger
	Gating Motions in Voltage-Gated Potassium Channels Revealed by Coarse-Grained Molecular Dynamics Simulations [My Copy] J. Phys. Chem. B, Vol. 112, No. 11. (20 March 2008), pp. 3277-3282. by W. Treptow, S. J. Marrink, M. Tarek posted to coarse-grained signaling by choonpeng on 2008-03-13 05:54:54 as
	Protein Folding Kinetics Under Force from Molecular Simulation. [My Copy] J Am Chem Soc (29 February 2008) by Robert B. Best, Gerhard Hummer posted to coarse-grained mechanical-unfolding by choonpeng on 2008-03-09 04:35:45 as
	A finite element framework for computation of protein normal modes and mechanical response [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by Mark Bathe posted to coarse-grained nma protein-mechanics by choonpeng on 2008-02-19 06:45:36 as along with 2 people and 1 group RamuAnandakrishnan skoddet Nielsen group
	Coarse-grained models of protein folding: toy models or predictive tools? [My Copy] Curr Opin Struct Biol (19 December 2007) by Cecilia Clementi posted to coarse-grained review by choonpeng on 2008-02-14 11:11:58 as along with 3 people and 1 group flbarroso sobolevnrm nh baker-group
	Unique elastic properties of the spectrin tetramer as revealed by multiscale coarse-grained modeling. [My Copy] Proc Natl Acad Sci U S A (17 January 2008) by Dina T T. Mirijanian, Gregory A A. Voth posted to coarse-grained protein-mechanics by choonpeng on 2008-01-30 02:00:35 as along with 2 people and 1 group cactus sobolevnrm baker-group
	Dynamics of essential collective motions in proteins: Theory [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 76, No. 5. (2007) by Maria Stepanova posted to coarse-grained pca by choonpeng on 2008-01-29 08:35:59 as along with 2 people and 1 group sobolevnrm Diego_Prada baker-group
	Coarse-grained simulation: a high-throughput computational approach to membrane proteins. [My Copy] Biochem Soc Trans, Vol. 36, No. Pt 1. (February 2008), pp. 27-32. by M. S. Sansom, K. A. Scott, P. J. Bond posted to coarse-grained by choonpeng on 2008-01-29 02:07:53 as
	Interpretation of NMR relaxation properties of Pin1, a two-domain protein, based on Brownian dynamic simulations. [My Copy] J Biomol NMR, Vol. 29, No. 1. (May 2004), pp. 21-35. by P. Bernadó, M. X. Fernandes, D. M. Jacobs, K. Fiebig, J. García de la Torre, M. Pons posted to coarse-grained protein-domains by choonpeng on 2007-12-18 04:50:36 as
	Stretching to understand proteins - a survey of the protein data bank. [My Copy] Biophysical journal, Vol. 94, No. 1. (1 January 2008), pp. 6-13. by Joanna I. Sułkowska, Marek Cieplak posted to coarse-grained force-probe-md by choonpeng on 2007-11-06 10:09:27 as along with 2 people edws paulschlesinger
	Proteins in a shear flow. [My Copy] The Journal of chemical physics, Vol. 127, No. 15. (21 October 2007) by P. Szymczak, Marek Cieplak posted to coarse-grained mechanical-unfolding by choonpeng on 2007-10-23 07:07:47 as along with 1 person edws
	Protein-folding dynamics: overview of molecular simulation techniques. [My Copy] Annual review of physical chemistry, Vol. 58 (2007), pp. 57-83. by Harold A. Scheraga, Mey Khalili, Adam Liwo posted to coarse-grained protein-folding review by choonpeng on 2007-08-30 11:50:09 as along with 2 people dgront adilson_mohr
	Characterization of the folding landscape of monomeric lactose repressor: quantitative comparison of theory and experiment. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 41. (11 October 2005), pp. 14569-14574. by P. Das, C. J. Wilson, G. Fossati, P. Wittung-Stafshede, K. S. Matthews, C. Clementi posted to coarse-grained go-model protein-folding protein-domains by choonpeng on 2007-07-30 05:16:11 as
	Membrane Remodeling from N-BAR Domain Interactions: Insights from Multi-Scale Simulation [My Copy] Biophysical Journal, Vol. 92, No. 10. (15 May 2007), pp. 3595-3602. by G. Ayton, P. Blood, G. Voth posted to coarse-grained by choonpeng on 2007-07-15 06:36:59 as along with 1 person dsmueller
	Coarse-grained model of proteins incorporating atomistic detail of the active site. [My Copy] Phys Rev Lett, Vol. 95, No. 21. (18 November 2005) by M. Neri, C. Anselmi, M. Cascella, A. Maritan, P. Carloni posted to coarse-grained by choonpeng on 2007-07-15 06:31:01 as
	Coarse-grained modeling of the actin filament derived from atomistic-scale simulations. [My Copy] Biophys J, Vol. 90, No. 5. (1 March 2006), pp. 1572-1582. by J. W. Chu, G. A. Voth posted to coarse-grained by choonpeng on 2007-07-15 06:14:54 as
	Mesoscopic modeling of bacterial flagellar microhydrodynamics. [My Copy] Biophys J, Vol. 91, No. 10. (15 November 2006), pp. 3640-3652. by Y. Gebremichael, G. S. Ayton, G. A. Voth posted to coarse-grained flagellar by choonpeng on 2007-07-15 05:59:01 as
	Developing and analyzing idealized models for molecular recognition. [My Copy] J Biotechnol, Vol. 129, No. 2. (30 April 2007), pp. 268-278. by H. Behringer, T. Bogner, A. Polotsky, A. Degenhard, F. Schmid posted to coarse-grained by choonpeng on 2007-07-15 05:15:16 as
	Cytoskeletal dynamics of human erythrocyte [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 12. (20 March 2007), pp. 4937-4942. by Ju Li, George Lykotrafitis, Ming Dao, Subra Suresh posted to coarse-grained cytoskeletal-dynamics by choonpeng on 2007-07-15 04:48:36 as along with 1 person danielgharvey
	From polypeptide sequences to structures using Monte Carlo simulations and an optimized potential [My Copy] The Journal of Chemical Physics, Vol. 111, No. 5. (1999), pp. 2301-2310. by Philippe Derreumaux posted to coarse-grained by choonpeng on 2007-07-14 06:34:00 as
	Tunable generic model for fluid bilayer membranes. [My Copy] Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 72, No. 1 Pt 1. (July 2005) by I. R. Cooke, K. Kremer, M. Deserno posted to coarse-grained by choonpeng on 2007-07-14 05:24:31 as
	A coarse-grained protein force field for folding and structure prediction [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 69, No. 2. (28 June 2007), pp. 394-408. by Julien Maupetit, P. Tuffery, Philippe Derreumaux posted to coarse-grained protein-folding by choonpeng on 2007-07-14 04:05:48 as along with 2 people edws wouterboomsma
	Stability and dynamics of virus capsids described by coarse-grained modeling. [My Copy] Structure, Vol. 14, No. 12. (December 2006), pp. 1767-1777. by A. Arkhipov, P. L. Freddolino, K. Schulten posted to coarse-grained by choonpeng on 2007-07-08 15:09:08 as along with 1 person RamuAnandakrishnan
	Folding-based molecular simulations reveal mechanisms of the rotary motor F1-ATPase. [My Copy] Proc Natl Acad Sci U S A, Vol. 103, No. 14. (4 April 2006), pp. 5367-5372. by N. Koga, S. Takada posted to coarse-grained go-model by choonpeng on 2007-07-08 13:03:57 as along with 1 person bilab
	Coarse Grained Model for Semiquantitative Lipid Simulations [My Copy] The Journal of Physical Chemistry B, Vol. 108, No. 2. (1 January 2004), pp. 750-760. by Siewert J. Marrink, Alex H. de Vries, Alan E. Mark posted to coarse-grained by choonpeng on 2007-07-07 05:57:14 as along with 5 people and 1 group dsmueller Elena_Zubova Marine softsimu sunnytov Molecular dynamics in MSU
	A Coarse-Grained Protein-Protein Potential Derived from an All-Atom Force Field [My Copy] J. Phys. Chem. B (6 July 2007) by N. Basdevant, D. Borgis, T. Ha-Duong posted to coarse-grained by choonpeng on 2007-07-07 05:56:50 as
	Kinetics and thermodynamics of folding of a de novo designed four-helix bundle protein. [My Copy] J Mol Biol, Vol. 263, No. 2. (25 October 1996), pp. 323-343. by Z. Guo, D. Thirumalai posted to coarse-grained protein-folding by choonpeng on 2007-07-06 01:53:32 as
	Assembly of lipoprotein particles revealed by coarse-grained molecular dynamics simulations [My Copy] Journal of Structural Biology In Advances in Molecular Dynamics Simulations, Vol. 157, No. 3. (March 2007), pp. 579-592. by Amy Y. Shih, Peter L. Freddolino, Anton Arkhipov, Klaus Schulten posted to coarse-grained by choonpeng on 2007-07-02 01:39:43 as along with 1 person dylan77
	Slow protein conformational dynamics from multiple experimental structures: the helix/sheet transition of arc repressor. [My Copy] Structure, Vol. 13, No. 12. (December 2005), pp. 1755-1763. by R. B. Best, Y. G. Chen, G. Hummer posted to coarse-grained go-model by choonpeng on 2007-07-01 05:55:06 as along with 3 people aqeel jlh64 iantunbridge
	Protein conformational transitions explored by mixed elastic network models. [My Copy] Proteins (27 June 2007) by Wenjun Zheng, Bernard R R. Brooks, Gerhard Hummer posted to coarse-grained by choonpeng on 2007-07-01 03:33:28 as along with 2 people apaydin aqeel
	Topological and energetic factors: what determines the structural details of the transition state ensemble and “en-route” intermediates for protein folding? an investigation for small globular proteins1 [My Copy] Journal of Molecular Biology, Vol. 298, No. 5. (19 May 2000), pp. 937-953. by Cecilia Clementi, Hugh Nymeyer, José N. Onuchic posted to coarse-grained go-model protein-folding by choonpeng on 2007-07-01 02:56:46 as along with 2 people edws aqeel
	Protein folding: Then and now. [My Copy] Arch Biochem Biophys, Vol. 469, No. 1. (1 January 2008), pp. 4-19. by Yiwen Chen, Feng Ding, Huifen Nie, et al.Adrian W. W. Serohijos, Shantanu Sharma, Kyle C. C. Wilcox, Shuangye Yin, Nikolay V. V. Dokholyan posted to coarse-grained protein-folding by choonpeng on 2007-06-30 08:02:36 as along with 1 person and 8 groups shantanu structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology

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protein-folding	177
modular	117
coarse-grained	111
review	90
protein-interaction	87
protein-domains	83
force-probe-md	64
mechanotransduction	63
flagellar	61
methodology	52
protein-translocation	48
single-molecule-methods	48
allostery	45
signaling	42
cell-adhesion	41
high-t-md	40
ttss	29
nma	28
integrin	26
mechanical-unfolding	26
transmembrane	26
solvent-effects	24
protein-mechanics	22
books	21
protein-stability	19
pca	18
chaperone	16
cytoskeletal-dynamics	16
folding-nucleus	16
cooperativity	15
folding-intermediate	15
web-server	15
go-model	14
bioinformatics	13
ensemble	12
implicit-solvent	12
theoretical	11
software	10
self-assembly	9
denatured-state	8
crowding	7
diffusion	7
multi-scale	7
protein-degradation	7
ig-like	6
kinetics	6
computer-programming	5
protein-secretion	5
salt-bridge	5
protein-dynamics	4
structure-validation	3
science-presentation	1
science-writing	1

choonpeng's coarse-grained [111 articles] Export

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