choonpeng's go-model [14 articles] Export

Recent papers added to choonpeng's library classified by the tag go-model. You can also see everyone's go-model.

	Dependence of protein mechanical unfolding pathways on pulling speeds [My Copy] The Journal of Chemical Physics, Vol. 130, No. 14. (14 April 2009), 145102. by Mai S. Li, Maksim Kouza posted to go-model mechanical-unfolding by choonpeng on 2009-04-27 07:52:16 as along with 1 person edws
	Protein simulations combining an all-atom force field with a Go term [My Copy] Journal of Physics: Condensed Matter, Vol. 19, No. 28. (2007) by Jan H. Meinke, Ulrich H. E. Hansmann posted to go-model protein-folding by choonpeng on 2007-08-08 08:50:11 as along with 1 person flbarroso
	Characterization of the folding landscape of monomeric lactose repressor: quantitative comparison of theory and experiment. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 41. (11 October 2005), pp. 14569-14574. by P. Das, C. J. Wilson, G. Fossati, P. Wittung-Stafshede, K. S. Matthews, C. Clementi posted to coarse-grained go-model protein-folding protein-domains by choonpeng on 2007-07-30 05:16:11 as
	Folding-based molecular simulations reveal mechanisms of the rotary motor F1-ATPase. [My Copy] Proc Natl Acad Sci U S A, Vol. 103, No. 14. (4 April 2006), pp. 5367-5372. by N. Koga, S. Takada posted to coarse-grained go-model by choonpeng on 2007-07-08 13:03:57 as along with 1 person bilab
	Slow protein conformational dynamics from multiple experimental structures: the helix/sheet transition of arc repressor. [My Copy] Structure, Vol. 13, No. 12. (December 2005), pp. 1755-1763. by R. B. Best, Y. G. Chen, G. Hummer posted to coarse-grained go-model by choonpeng on 2007-07-01 05:55:06 as along with 3 people aqeel jlh64 iantunbridge
	Topological and energetic factors: what determines the structural details of the transition state ensemble and “en-route” intermediates for protein folding? an investigation for small globular proteins1 [My Copy] Journal of Molecular Biology, Vol. 298, No. 5. (19 May 2000), pp. 937-953. by Cecilia Clementi, Hugh Nymeyer, José N. Onuchic posted to coarse-grained go-model protein-folding by choonpeng on 2007-07-01 02:56:46 as along with 2 people edws aqeel
	Characterizing the unfolded states of proteins using single-molecule FRET spectroscopy and molecular simulations [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 5. (30 January 2007), pp. 1528-1533. by Kusai A. Merchant, Robert B. Best, John M. Louis, Irina V. Gopich, William A. Eaton posted to coarse-grained go-model protein-folding by choonpeng on 2007-06-24 12:51:37 as along with 5 people yanjiang carlosjavierna quanwang joseolucha toerst
	Multiple-basin energy landscapes for large-amplitude conformational motions of proteins: Structure-based molecular dynamics simulations [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 32. (8 August 2006), pp. 11844-11849. by Kei-ichi Okazaki, Nobuyasu Koga, Shoji Takada, Jose N. Onuchic, Peter G. Wolynes posted to coarse-grained go-model by choonpeng on 2007-06-24 10:43:08 as along with 3 people and 1 group bmduggan allmensch joseph_x_zhou protein_Dyn
	Mechanical resistance of proteins explained using simple molecular models. [My Copy] Biophysical journal, Vol. 90, No. 1. (1 January 2006), pp. 287-297. by Daniel K. West, David J. Brockwell, Peter D. Olmsted, Sheena E. Radford, Emanuele Paci posted to coarse-grained force-probe-md go-model by choonpeng on 2007-06-24 10:23:37 as along with 1 person edws
	Mechanical unfolding revisited through a simple but realistic model. [My Copy] J Chem Phys, Vol. 124, No. 15. (21 April 2006), 154909. by D. K. West, P. D. Olmsted, E. Paci posted to coarse-grained go-model mechanical-unfolding by choonpeng on 2007-06-24 10:22:07 as
	Exploring the mechanism of flexible biomolecular recognition with single molecule dynamics. [My Copy] Phys Rev Lett, Vol. 98, No. 12. (23 March 2007), 28105. by Q. Lu, H. P. Lu, J. Wang posted to coarse-grained go-model by choonpeng on 2007-06-23 14:19:06 as
	A systems biology perspective on protein structural dynamics and signal transduction. [My Copy] Curr Opin Struct Biol, Vol. 15, No. 1. (February 2005), pp. 23-30. by F. Rousseau, J. Schymkowitz posted to allostery cooperativity go-model by choonpeng on 2007-03-01 21:56:14 as along with 6 people lna alexg eweaver dgront ruvido jlh64
	Scaling behavior and structure of denatured proteins. [My Copy] Structure, Vol. 13, No. 7. (July 2005), pp. 1047-1054. by F. Ding, R. K. Jha, N. V. Dokholyan posted to denatured-state go-model by choonpeng on 2006-09-26 09:56:30 as
	Effective stochastic dynamics on a protein folding energy landscape [My Copy] The Journal of Chemical Physics, Vol. 125, No. 5. (2006) by Sichun Yang, Jose N. Onuchic, Herbert Levine posted to go-model protein-folding by choonpeng on 2006-09-25 02:00:27 as

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protein-folding	177
modular	117
coarse-grained	111
review	90
protein-interaction	87
protein-domains	83
force-probe-md	64
mechanotransduction	63
flagellar	61
methodology	52
single-molecule-methods	48
protein-translocation	48
allostery	45
signaling	43
cell-adhesion	43
high-t-md	40
ttss	29
nma	28
mechanical-unfolding	27
transmembrane	27
integrin	26
solvent-effects	24
protein-mechanics	22
books	21
protein-stability	19
pca	18
chaperone	16
folding-nucleus	16
cytoskeletal-dynamics	16
cooperativity	15
folding-intermediate	15
web-server	15
go-model	14
bioinformatics	13
ensemble	12
theoretical	12
implicit-solvent	12
software	10
self-assembly	9
denatured-state	8
crowding	7
protein-degradation	7
multi-scale	7
diffusion	7
kinetics	6
ig-like	6
computer-programming	5
salt-bridge	5
protein-secretion	5
protein-dynamics	4
structure-validation	3
science-writing	1
science-presentation	1

choonpeng's go-model [14 articles] Export

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