choonpeng's high-t-md [40 articles] Export

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	Temperature-induced unfolding pathway of a type III antifreeze protein: Insight from molecular dynamics simulation. [My Copy] Journal of molecular graphics & modelling (16 March 2008) by Sangeeta Kundu, Debjani Roy posted to high-t-md by choonpeng on 2008-07-22 09:31:21 as
	Differential stability of beta-sheets and alpha-helices in beta-lactamase: a high temperature molecular dynamics study of unfolding intermediates. [My Copy] Biophys. J., Vol. 65, No. 6. (1 December 1993), pp. 2304-2312. by S. Vijayakumar, S. Vishveshwara, G. Ravishanker, D. L. Beveridge posted to high-t-md protein-folding by choonpeng on 2008-07-22 07:56:59 as
	Thermal denaturing of mutant lysozyme with both the OPLSAA and the CHARMM force fields. [My Copy] J Am Chem Soc, Vol. 128, No. 41. (18 October 2006), pp. 13388-13395. by M. Eleftheriou, R. S. Germain, A. K. Royyuru, R. Zhou posted to high-t-md by choonpeng on 2008-07-21 15:02:27 as along with 3 people yxue saravan allmensch
	Molecular dynamics simulation of thermal unfolding of Thermatoga maritima DHFR. [My Copy] Physical chemistry chemical physics : PCCP, Vol. 9, No. 6. (14 February 2007), pp. 711-718. by J. Pang, R. K. Allemann posted to high-t-md by choonpeng on 2008-07-21 14:53:46 as
	Characterization of residual structure in the thermally denatured state of barnase by simulation and experiment: description of the folding pathway. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 94, No. 25. (9 December 1997), pp. 13409-13413. by C. J. Bond, K. B. Wong, J. Clarke, A. R. Fersht, V. Daggett posted to folding-nucleus high-t-md protein-folding by choonpeng on 2008-07-19 08:27:28 as
	Microscopic Reversibility of Protein Folding in Molecular Dynamics Simulations of the Engrailed Homeodomain. [My Copy] Biochemistry, Vol. 47, No. 27. (8 July 2008), pp. 7079-7089. by Michelle E. Mccully, David A. Beck, Valerie Daggett posted to high-t-md by choonpeng on 2008-06-23 08:03:22 as
	Thermal unfolding simulations of bacterial flagellin: insight into its refolding before assembly. [My Copy] Biophysical journal, Vol. 94, No. 10. (15 May 2008), pp. 3858-3871. by Choon-Peng Chng, Akio Kitao posted to flagellar high-t-md by choonpeng on 2008-05-28 02:39:59 as along with 1 person Diego_Prada
	The conserved salt bridge linking two C-terminal ?/? units in homodimeric triosephosphate isomerase determines the folding rate of the monomer [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by César A. Reyes-López, Edith González-Mondragón, Claudia G. Benítez-Cardoza, et al.María E. Chánez-Cárdenas, Nallely Cabrera, Ruy Pérez-Montfort, Andrés Hernández-Arana posted to high-t-md protein-folding salt-bridge by choonpeng on 2008-03-04 06:05:20 as
	Application of principal component analysis in protein unfolding: An all-atom molecular dynamics simulation study [My Copy] The Journal of Chemical Physics, Vol. 127, No. 16. (2007) by Atanu Das, Chaitali Mukhopadhyay posted to high-t-md pca by choonpeng on 2007-11-01 00:47:02 as along with 2 people and 1 group sobolevnrm paulschlesinger baker-group
	The role of the turn in beta-hairpin formation during WW domain folding. [My Copy] Protein Sci, Vol. 16, No. 10. (October 2007), pp. 2233-2239. by T. Sharpe, A. L. Jonsson, T. J. Rutherford, V. Daggett, A. R. Fersht posted to high-t-md protein-folding by choonpeng on 2007-10-15 07:55:22 as along with 1 person carlosjavierna
	Unfolding Pathways of Goat [alpha]-Lactalbumin as Revealed in Multiple Alignment of Molecular Dynamics Trajectories [My Copy] Journal of Molecular Biology, Vol. 371, No. 5. (31 August 2007), pp. 1354-1364. by Tomotaka Oroguchi, Mitsunori Ikeguchi, Motonori Ota, Kunihiro Kuwajima, Akinori Kidera posted to high-t-md by choonpeng on 2007-08-09 10:08:27 as along with 1 person and 2 groups barry structural_bioinformatics Bioinformatics
	Thermal versus mechanical unfolding of ubiquitin [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 65, No. 3. (2006), pp. 759-766. by Anders Irbäck, Simon Mitternacht posted to force-probe-md high-t-md by choonpeng on 2006-12-29 02:40:08 as
	Refolding upon force quench and pathways of mechanical and thermal unfolding of ubiquitin. [My Copy] Biophys J (27 October 2006) by Mai Suan S. Li, Maxim Kouza, Chin-Kun K. Hu posted to coarse-grained force-probe-md high-t-md by choonpeng on 2006-12-29 02:24:29 as
	Simulation and experiment conspire to reveal cryptic intermediates and a slide from the nucleation-condensation to framework mechanism of folding. [My Copy] J Mol Biol, Vol. 350, No. 4. (22 July 2005), pp. 757-775. by G. W. White, S. Gianni, J. G. Grossmann, P. Jemth, A. R. Fersht, V. Daggett posted to high-t-md protein-folding by choonpeng on 2006-12-25 07:42:05 as
	On the Extended <img src="http://pubs.acs.org/images/gifchars/beta2.gif" border="0" align="middle">-Conformation Propensity of Polypeptides at High Temperature [My Copy] J. Am. Chem. Soc., Vol. 125, No. 52. (31 December 2003), pp. 16220-16227. by W. Y. Yang, E. Larios, M. Gruebele posted to high-t-md protein-folding by choonpeng on 2006-12-06 18:01:18 as
	Phi-analysis at the experimental limits: mechanism of beta-hairpin formation. [My Copy] J Mol Biol, Vol. 360, No. 4. (21 July 2006), pp. 865-881. by M. Petrovich, A. L. Jonsson, N. Ferguson, V. Daggett, A. R. Fersht posted to high-t-md protein-folding by choonpeng on 2006-10-12 13:02:01 as
	Thermal unfolding of proteins. [My Copy] J Chem Phys, Vol. 123, No. 19. (15 November 2005) by M. Cieplak, J. I. Sułkowska posted to high-t-md theoretical by choonpeng on 2006-10-03 10:02:48 as
	Thermal unfolding molecular dynamics simulation of <I>Escherichia coli</I> dihydrofolate reductase: Thermal stability of protein domains and unfolding pathway [My Copy] Proteins: Structure, Function, and Genetics, Vol. 46, No. 3. (2002), pp. 308-320. by Yuk Y. Sham, Buyong Ma, Chung-Jung Tsai, Ruth Nussinov posted to high-t-md protein-domains by choonpeng on 2006-10-03 08:32:47 as along with 1 person yxue
	Thermal unfolding simulations of apo-calmodulin using leap-dynamics [My Copy] Proteins: Structure, Function, and Genetics, Vol. 50, No. 4. (2003), pp. 648-656. by Jens Kleinjung, Franca Fraternali, Stephen R. Martin, Peter M. Bayley posted to high-t-md by choonpeng on 2006-10-03 08:27:03 as
	Characterization of two distinct beta2-microglobulin unfolding intermediates that may lead to amyloid fibrils of different morphology. [My Copy] Biochemistry, Vol. 44, No. 49. (13 December 2005), pp. 16098-16107. by R. S. Armen, V. Daggett posted to folding-intermediate high-t-md by choonpeng on 2006-09-25 01:40:13 as
	The early steps in the unfolding of azurin. [My Copy] Biochemistry, Vol. 43, No. 49. (14 December 2004), pp. 15604-15609. by B. Rizzuti, V. Daggett, R. Guzzi, L. Sportelli posted to high-t-md by choonpeng on 2006-09-25 01:35:42 as
	Unfolding crystallins: the destabilizing role of a beta-hairpin cysteine in betaB2-crystallin by simulation and experiment. [My Copy] Protein Sci, Vol. 14, No. 5. (May 2005), pp. 1282-1292. by J. T. MacDonald, A. G. Purkiss, M. A. Smith, P. Evans, J. M. Goodfellow, C. Slingsby posted to high-t-md by choonpeng on 2006-09-25 01:33:42 as along with 1 person scampos
	Unfolding transition state and intermediates of the tumor suppressor p16INK4a investigated by molecular dynamics simulations. [My Copy] Proteins, Vol. 64, No. 1. (1 July 2006), pp. 178-192. by G. Interlandi, G. Settanni, A. Caflisch posted to folding-intermediate high-t-md by choonpeng on 2006-09-25 01:33:24 as
	Characterization of the residual structure in the unfolded state of the ?131? fragment of staphylococcal nuclease [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 65, No. 1. (2006), pp. 145-152. by Christopher J. Francis, Kresten Lindorff-Larsen, Robert B. Best, Michele Vendruscolo posted to denatured-state ensemble high-t-md by choonpeng on 2006-09-20 09:08:03 as
	Unfolding proteins by external forces and temperature: the importance of topology and energetics. [My Copy] Proc Natl Acad Sci U S A, Vol. 97, No. 12. (6 June 2000), pp. 6521-6526. by E. Paci, M. Karplus posted to force-probe-md high-t-md by choonpeng on 2006-08-31 05:09:28 as
	Towards a complete description of the structural and dynamic properties of the denatured state of barnase and the role of residual structure in folding, [My Copy] Journal of Molecular Biology, Vol. 296, No. 5. (10 March 2000), pp. 1257-1282. by Kam-Bo Wong, Jane Clarke, Chris J. Bond, et al.Jose L. Neira, Stefan M. Freund, Alan R. Fersht, Valerie Daggett posted to denatured-state high-t-md by choonpeng on 2006-08-23 09:09:41 as along with 1 person flbarroso
	Unfolding dynamics of the protein ubiquitin: Insight from simulation [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 72, No. 5. (2005) by Shubhra G. Dastidar, Chaitali Mukhopadhyay posted to high-t-md by choonpeng on 2006-08-11 09:30:13 as along with 1 person yxue
	Identification and characterization of the unfolding transition state of chymotrypsin inhibitor 2 by molecular dynamics simulations. [My Copy] J Mol Biol, Vol. 257, No. 2. (29 March 1996), pp. 412-429. by A. Li, V. Daggett posted to high-t-md by choonpeng on 2006-08-11 08:53:01 as along with 1 person allmensch
	"New view" of protein folding reconciled with the old through multiple unfolding simulations. [My Copy] Science, Vol. 278, No. 5345. (12 December 1997), pp. 1928-1931. by T. Lazaridis, M. Karplus posted to high-t-md protein-folding by choonpeng on 2006-08-11 08:21:55 as
	Analysis methods for comparison of multiple molecular dynamics trajectories: applications to protein unfolding pathways and denatured ensembles. [My Copy] J Mol Biol, Vol. 290, No. 1. (2 July 1999), pp. 283-304. by S. L. Kazmirski, A. Li, V. Daggett posted to ensemble high-t-md methodology by choonpeng on 2006-08-04 03:18:55 as along with 2 people and 2 groups barry lillekatt structural_bioinformatics Bioinformatics
	The Folding Pathway of Spectrin R17 from Experiment and Simulation: Using Experimentally Validated MD Simulations to Characterize States Hinted at by Experiment [My Copy] Journal of Molecular Biology, Vol. 359, No. 1. (26 May 2006), pp. 159-173. by Kathryn A. Scott, Lucy G. Randles, Stephen J. Moran, Valerie Daggett, Jane Clarke posted to high-t-md protein-folding by choonpeng on 2006-08-04 00:19:37 as
	The folding pathway of ubiquitin from all-atom molecular dynamics simulations [My Copy] Biophysical Chemistry, Vol. 111, No. 2. (1 October 2004), pp. 159-171. by Neelan J. Marianayagam, Sophie E. Jackson posted to high-t-md pca by choonpeng on 2006-07-24 02:04:01 as
	Selective excitation of native fluctuations during thermal unfolding simulations: horse heart cytochrome c as a case study. [My Copy] Biophys J, Vol. 84, No. 3. (March 2003), pp. 1876-1883. by D. Roccatano, I. Daidone, M. A. Ceruso, C. Bossa, A. D. Nola posted to high-t-md pca by choonpeng on 2006-07-17 03:47:03 as
	A molecular dynamics simulation of SNase and its hydration shell at high temperature and high pressure. [My Copy] Biochim Biophys Acta, Vol. 1764, No. 3. (25 March 2006), pp. 522-534. by Nikolai Smolin, Roland Winter posted to high-t-md protein-folding by choonpeng on 2006-07-11 01:06:26 as along with 1 person and 1 group nknii TCR_Signaling
	Increasing temperature accelerates protein unfolding without changing the pathway of unfolding. [My Copy] J Mol Biol, Vol. 322, No. 1. (6 September 2002), pp. 189-203. by R. Day, B. J. Bennion, S. Ham, V. Daggett posted to high-t-md by choonpeng on 2006-07-11 01:04:55 as
	Ensemble versus single-molecule protein unfolding. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 38. (20 September 2005), pp. 13445-13450. by R. Day, V. Daggett posted to ensemble high-t-md by choonpeng on 2006-07-11 01:02:11 as along with 2 people bilab hmk
	Demonstration of a low-energy on-pathway intermediate in a fast-folding protein by kinetics, protein engineering, and simulation. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 17. (27 April 2004), pp. 6450-6455. by P. Jemth, S. Gianni, R. Day, et al.B. Li, C. M. Johnson, V. Daggett, A. R. Fersht posted to folding-intermediate high-t-md by choonpeng on 2006-07-11 00:56:33 as
	Atomically detailed description of the unfolding of alpha-lactalbumin by the combined use of experiments and simulations. [My Copy] J Mol Biol, Vol. 354, No. 1. (18 November 2005), pp. 164-172. by T. Oroguchi, M. Ikeguchi, K. Saeki, et al.K. Kamagata, Y. Sawano, M. Tanokura, A. Kidera, K. Kuwajima posted to high-t-md by choonpeng on 2006-07-11 00:51:38 as along with 1 person bilab
	Identification and characterization of key substructures involved in the early folding events of a (beta/alpha)8-barrel protein as studied by experimental and computational methods. [My Copy] J Mol Biol, Vol. 353, No. 5. (11 November 2005), pp. 1161-1170. by S. Akanuma, A. Yamagishi posted to folding-intermediate high-t-md by choonpeng on 2006-07-11 00:48:01 as
	A detailed unfolding pathway of a (beta/alpha)8-barrel protein as studied by molecular dynamics simulations. [My Copy] Proteins, Vol. 58, No. 3. (15 February 2005), pp. 538-546. by S. Akanuma, H. Miyagawa, K. Kitamura, A. Yamagishi posted to folding-intermediate high-t-md by choonpeng on 2006-07-11 00:46:32 as

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protein-folding	177
modular	117
coarse-grained	111
review	90
protein-interaction	87
protein-domains	83
force-probe-md	64
mechanotransduction	63
flagellar	61
methodology	52
protein-translocation	48
single-molecule-methods	48
allostery	45
cell-adhesion	43
signaling	43
high-t-md	40
ttss	29
nma	28
transmembrane	27
integrin	26
mechanical-unfolding	26
solvent-effects	24
protein-mechanics	22
books	21
protein-stability	19
pca	18
chaperone	16
cytoskeletal-dynamics	16
folding-nucleus	16
cooperativity	15
folding-intermediate	15
web-server	15
go-model	14
bioinformatics	13
ensemble	12
implicit-solvent	12
theoretical	11
software	10
self-assembly	9
denatured-state	8
crowding	7
diffusion	7
multi-scale	7
protein-degradation	7
ig-like	6
kinetics	6
computer-programming	5
protein-secretion	5
salt-bridge	5
protein-dynamics	4
structure-validation	3
science-presentation	1
science-writing	1

choonpeng's high-t-md [40 articles] Export

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