choonpeng's nma [28 articles] Export

Recent papers added to choonpeng's library classified by the tag nma. You can also see everyone's nma.

	Key interactions in integrin ectodomain responsible for global conformational change detected by elastic network normal-mode analysis. [My Copy] Biophysical journal, Vol. 95, No. 6. (15 September 2008), pp. 2895-2908. by Atsushi Matsumoto, Tetsuji Kamata, Junichi Takagi, Kenji Iwasaki, Kei Yura posted to integrin nma by choonpeng on 2008-11-25 03:07:01 as along with 2 people tprpip aqeel
	Anisotropy of fluctuation dynamics of proteins with an elastic network model. [My Copy] Biophys J, Vol. 80, No. 1. (January 2001), pp. 505-515. by A. R. Atilgan, S. R. Durell, R. L. Jernigan, M. C. Demirel, O. Keskin, I. Bahar posted to nma by choonpeng on 2008-06-16 07:41:35 as along with 4 people apaydin lna aqeel insectopalo
	Toward a molecular understanding of the anisotropic response of proteins to external forces: Insights from elastic network models. [My Copy] Biophys J (25 January 2008) by Eran Eyal, Ivet Bahar posted to mechanical-unfolding nma by choonpeng on 2008-03-09 03:47:48 as along with 2 people joseph_x_zhou jennifermbui
	ElNemo: a normal mode web server for protein movement analysis and the generation of templates for molecular replacement [My Copy] Nucl. Acids Res., Vol. 32, No. suppl_2. (1 July 2004), pp. W610-614. by Karsten Suhre, Yves-Henri Sanejouand posted to nma web-server by choonpeng on 2008-02-24 10:59:03 as along with 5 people and 2 groups sanejouand BragilMassoud apaydin jwm martainn Radiation_Damage Stressosome
	DFprot: a webtool for predicting local chain deformability [My Copy] Bioinformatics, Vol. 23, No. 7. (1 April 2007), pp. 901-902. by Garzon, Jose Ignacio, Kovacs, et al. Julio, Abagyan, Ruben, Chacon, Pablo posted to nma web-server by choonpeng on 2008-02-24 10:58:01 as
	Thorough Validation of Protein Normal Mode Analysis: A Comparative Study with Essential Dynamics [My Copy] Structure, Vol. 15, No. 5. (16 May 2007), pp. 565-575. by Manuel Rueda, Pablo Chacon, Modesto Orozco posted to nma pca by choonpeng on 2008-02-23 02:39:58 as along with 5 people aqeel ruvido cactus jlh64 edvin
	A finite element framework for computation of protein normal modes and mechanical response [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by Mark Bathe posted to coarse-grained nma protein-mechanics by choonpeng on 2008-02-19 06:45:36 as along with 2 people and 1 group RamuAnandakrishnan skoddet Nielsen group
	Close Correspondence between the Motions from Principal Component Analysis of Multiple HIV-1 Protease Structures and Elastic Network Modes. [My Copy] Structure, Vol. 16, No. 2. (12 February 2008), pp. 321-330. by Lei Yang, Guang Song, Alicia Carriquiry, Robert L L. Jernigan posted to nma pca by choonpeng on 2008-02-17 11:54:56 as along with 1 person and 1 group sobolevnrm baker-group
	Can Conformational Change Be Described by Only a Few Normal Modes? [My Copy] Biophys. J., Vol. 90, No. 5. (1 March 2006), pp. 1583-1593. by Paula Petrone, Vijay S. Pande posted to nma by choonpeng on 2008-01-26 10:30:22 as along with 12 people and 7 groups ahmetbakan csrocha BragilMassoud barry dimka aqeel shuns yongzhao xdeupi joergkurtwegner daevans LamBras structural_bioinformatics Bioinformatics TSRI_MGL Molecular-Modelling Drug-Design Cheminformatics LabCompMed
	Modeling protein conformational changes by iterative fitting of distance constraints using reoriented normal modes. [My Copy] Biophys J, Vol. 90, No. 12. (15 June 2006), pp. 4327-4336. by W. Zheng, B. R. Brooks posted to nma by choonpeng on 2008-01-26 10:29:58 as
	Characterization of Protein Conformational States by Normal-Mode Frequencies [My Copy] J. Am. Chem. Soc. (23 August 2007) by B. A. Hall, S. L. Kaye, A. Pang, R. Perera, P. C. Biggin posted to nma by choonpeng on 2008-01-13 01:13:09 as along with 6 people and 3 groups Scis0000002 ubcg08l barry aqeel sobolevnrm LamBras structural_bioinformatics Bioinformatics baker-group
	Identification of core amino acids stabilizing rhodopsin. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 19. (11 May 2004), pp. 7246-7251. by A. J. Rader, G. Anderson, B. Isin, H. G. Khorana, I. Bahar, J. Klein-Seetharaman posted to nma protein-folding by choonpeng on 2007-10-01 05:50:32 as along with 3 people lna aqeel cen4ik
	Binding induced conformational changes of proteins correlate with their intrinsic fluctuations: A case study of antibodies [My Copy] BMC Structural Biology, Vol. 7 (17 May 2007), 31. by Ozlem Keskin posted to nma by choonpeng on 2007-07-19 03:35:51 as along with 4 people and 1 group skywalkerus02 sobolevnrm aqeel medic0747 baker-group
	Insights into equilibrium dynamics of proteins from comparison of NMR and X-ray data with computational predictions. [My Copy] Structure, Vol. 15, No. 6. (June 2007), pp. 741-749. by L. W. Yang, E. Eyal, C. Chennubhotla, J. Jee, A. M. Gronenborn, I. Bahar posted to nma by choonpeng on 2007-07-17 02:42:46 as
	How Well Can We Understand Large-Scale Protein Motions Using Normal Modes of Elastic Network Models? [My Copy] Biophys J, Vol. 93, No. 3. (1 August 2007), pp. 920-929. by Lei Yang, Guang Song, Robert L. L. Jernigan posted to nma by choonpeng on 2007-07-07 04:30:56 as along with 3 people and 2 groups barry aqeel willpitt structural_bioinformatics Bioinformatics
	The Dynamics of Signal Triggering in a gp130-Receptor Complex [My Copy] Structure, Vol. 15, No. 4. (April 2007), pp. 441-448. by Rishi Matadeen, Wai-Ching Hon, John K. Heath, Yvonne E. Jones, Stephen Fuller posted to nma signaling by choonpeng on 2007-04-19 02:31:54 as
	Coarse-graining of protein structures for the normal mode studies [My Copy] Journal of Computational Chemistry, Vol. 28, No. 8. (2007), pp. 1400-1410. by Kilho Eom, Seung-Chul Baek, Jung-Hee Ahn, Sungsoo Na posted to coarse-grained nma by choonpeng on 2007-04-11 01:41:10 as along with 2 people abovell aqeel
	Markov propagation of allosteric effects in biomolecular systems: application to GroEL-GroES. [My Copy] Mol Syst Biol, Vol. 2 (2006) by C. Chennubhotla, I. Bahar posted to allostery nma by choonpeng on 2007-03-23 06:44:12 as along with 1 person lna
	Investigating the Local Flexibility of Functional Residues in Hemoproteins [My Copy] Biophys. J., Vol. 90, No. 8. (15 April 2006), pp. 2706-2717. by Sophie Sacquin-Mora, Richard Lavery posted to coarse-grained nma by choonpeng on 2007-03-12 08:14:42 as along with 1 person aqeel
	Locating the active sites of enzymes using mechanical properties [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 67, No. 2. (2007), pp. 350-359. by Sophie Sacquin-Mora, Émilie Laforet, Richard Lavery posted to coarse-grained nma by choonpeng on 2007-03-10 03:33:05 as along with 1 person barmak7282
	Automatic domain decomposition of proteins by a Gaussian Network Model. [My Copy] Proteins, Vol. 57, No. 4. (1 December 2004), pp. 725-733. by S. Kundu, D. C. Sorensen, G. N. Phillips posted to protein-domains nma by choonpeng on 2007-03-09 00:10:02 as along with 1 person aqeel
	Analysis of Functional Motions in Brownian Molecular Machines with an Efficient Block Normal Mode Approach: Myosin-II and Ca2+-ATPase [My Copy] Biophys. J., Vol. 86, No. 2. (1 February 2004), pp. 743-763. by Guohui Li, Qiang Cui posted to nma by choonpeng on 2007-01-09 06:23:32 as along with 1 person aqeel
	Model of the toxic complex of anthrax: responsive conformational changes in both the lethal factor and the protective antigen heptamer. [My Copy] Protein Sci, Vol. 15, No. 9. (September 2006), pp. 2190-2200. by F. Tama, G. Ren, C. L. Brooks, A. K. Mitra posted to nma by choonpeng on 2007-01-09 06:22:38 as along with 1 person aqeel
	Interpreting Correlated Motions Using Normal Mode Analysis [My Copy] Structure, Vol. 14, No. 11. (November 2006), pp. 1647-1653. by Adam W. Van Wynsberghe, Qiang Cui posted to allostery nma by choonpeng on 2006-11-16 01:52:53 as along with 2 people aqeel gane5h
	Identification of kinetically hot residues in proteins [My Copy] Protein Sci, Vol. 7, No. 12. (1 December 1998), pp. 2522-2532. by M. C. Demirel, A. R. Atilgan, R. L. Jernigan, B. Erman, I. Bahar posted to nma protein-folding by choonpeng on 2006-11-13 11:45:36 as along with 1 person aqeel
	Folding core predictions from network models of proteins [My Copy] Polymer In Conformational Protein Conformations, Vol. 45, No. 2. (January 2004), pp. 659-668. by A. J. Rader, Ivet Bahar posted to nma protein-folding by choonpeng on 2006-11-13 11:43:15 as along with 1 person Diego_Prada
	Vibrational Dynamics of Folded Proteins: Significance of Slow and Fast Motions in Relation to Function and Stability [My Copy] Physical Review Letters, Vol. 80, No. 12. (23 Mar 1998), pp. 2733-2736. by Ivet Bahar, Ali R. Atilgan, Melik C. Demirel, Burak Erman posted to coarse-grained nma by choonpeng on 2006-11-07 01:05:52 as along with 2 people edws Diego_Prada
	iGNM: a database of protein functional motions based on Gaussian Network Model. [My Copy] Bioinformatics, Vol. 21, No. 13. (1 July 2005), pp. 2978-2987. by L. W. Yang, X. Liu, C. J. Jursa, et al.M. Holliman, A. J. Rader, H. A. Karimi, I. Bahar posted to coarse-grained nma web-server by choonpeng on 2006-11-06 23:46:04 as along with 3 people and 3 groups barry baaden yongzhao structural_bioinformatics Bioinformatics TSRI_MGL

Note: You may cite this page as: http://www.citeulike.org/user/choonpeng/tag/nma

protein-folding	177
modular	117
coarse-grained	111
review	90
protein-interaction	87
protein-domains	83
force-probe-md	64
mechanotransduction	63
flagellar	61
methodology	52
protein-translocation	48
single-molecule-methods	48
allostery	45
signaling	43
cell-adhesion	41
high-t-md	40
ttss	29
nma	28
transmembrane	27
integrin	26
mechanical-unfolding	26
solvent-effects	24
protein-mechanics	22
books	21
protein-stability	19
pca	18
chaperone	16
cytoskeletal-dynamics	16
folding-nucleus	16
cooperativity	15
folding-intermediate	15
web-server	15
go-model	14
bioinformatics	13
ensemble	12
implicit-solvent	12
theoretical	11
software	10
self-assembly	9
denatured-state	8
crowding	7
diffusion	7
multi-scale	7
protein-degradation	7
ig-like	6
kinetics	6
computer-programming	5
protein-secretion	5
salt-bridge	5
protein-dynamics	4
structure-validation	3
science-presentation	1
science-writing	1

choonpeng's nma [28 articles] Export

choonpeng's tags