choonpeng's pca [18 articles] Export

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	Coarse-graining protein structures with local multivariate features from molecular dynamics. [My Copy] The journal of physical chemistry. B, Vol. 112, No. 44. (6 November 2008), pp. 14026-14035. by Zhiyong Zhang, Willy Wriggers posted to methodology pca protein-dynamics by choonpeng on 2009-07-31 11:19:36 as along with 1 person and 1 group sobolevnrm baker-group
	A Systematic Methodology for Defining Coarse-Grained Sites in Large Biomolecules [My Copy] Biophysical Journal, Vol. 95, No. 11. (01 December 2008), pp. 5073-5083. by Z. Zhang, L. Lu, W. Noid, V. Krishna, J. Pfaendtner, G. Voth posted to coarse-grained methodology pca by choonpeng on 2008-11-27 08:53:06 as along with 5 people and 2 groups okapi barry sobolevnrm agrossfield paulschlesinger structural_bioinformatics McCammon
	Investigating protein dynamics in collective coordinate space [My Copy] Current Opinion in Structural Biology, Vol. 9, No. 2. (April 1999), pp. 164-169. by A. Kitao, N. Go posted to pca by choonpeng on 2008-06-03 05:38:15 as along with 6 people and 1 group bmduggan Scis0000002 ttjoseph ffranca barry sobolevnrm baker-group
	Thorough Validation of Protein Normal Mode Analysis: A Comparative Study with Essential Dynamics [My Copy] Structure, Vol. 15, No. 5. (16 May 2007), pp. 565-575. by Manuel Rueda, Pablo Chacon, Modesto Orozco posted to nma pca by choonpeng on 2008-02-23 02:39:58 as along with 5 people aqeel ruvido cactus jlh64 edvin
	Full correlation analysis of conformational protein dynamics [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by Oliver F. Lange, Helmut Grubmüller posted to methodology pca by choonpeng on 2008-02-19 07:08:18 as along with 7 people and 1 group anuragsethi jeargle Diego_Prada softsimu barry sobolevnrm LamBras baker-group
	Close Correspondence between the Motions from Principal Component Analysis of Multiple HIV-1 Protease Structures and Elastic Network Modes. [My Copy] Structure, Vol. 16, No. 2. (12 February 2008), pp. 321-330. by Lei Yang, Guang Song, Alicia Carriquiry, Robert L L. Jernigan posted to nma pca by choonpeng on 2008-02-17 11:54:56 as along with 1 person and 1 group sobolevnrm baker-group
	Principal components analysis of protein structure ensembles calculated using NMR data. [My Copy] J Biomol NMR, Vol. 20, No. 1. (May 2001), pp. 61-70. by P. W. Howe posted to ensemble pca by choonpeng on 2008-02-17 10:05:10 as
	Dynamics of essential collective motions in proteins: Theory [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 76, No. 5. (2007) by Maria Stepanova posted to coarse-grained pca by choonpeng on 2008-01-29 08:35:59 as along with 2 people and 1 group sobolevnrm Diego_Prada baker-group
	Conformational substates in different crystal forms of the photoactive yellow protein--correlation with theoretical and experimental flexibility. [My Copy] Protein Sci, Vol. 9, No. 1. (January 2000), pp. 64-72. by D. M. van Aalten, W. Crielaard, K. J. Hellingwerf, L. Joshua-Tor posted to ensemble pca protein-dynamics by choonpeng on 2008-01-13 10:49:07 as
	Application of principal component analysis in protein unfolding: An all-atom molecular dynamics simulation study [My Copy] The Journal of Chemical Physics, Vol. 127, No. 16. (2007) by Atanu Das, Chaitali Mukhopadhyay posted to high-t-md pca by choonpeng on 2007-11-01 00:47:02 as along with 2 people and 1 group sobolevnrm paulschlesinger baker-group
	Metadynamics in Essential Coordinates: Free Energy Simulation of Conformational Changes [My Copy] J. Phys. Chem. B, Vol. 111, No. 12. (29 March 2007), pp. 3073-3076. by V. Spiwok, P. Lipovova, B. Kralova posted to coarse-grained pca by choonpeng on 2007-03-28 08:56:00 as along with 2 people and 1 group A_Coletta_Thesis AndreaColetta Structural Biology Group TorVergata
	A link between sequence conservation and domain motion within the AAA+ family [My Copy] Journal of Structural Biology In AAA+ Proteins: Based on Contributions to the 5th International Conference on AAA+ Proteins at Airlie House, Virginia, Vol. 146, No. 1-2. (April 2004), pp. 189-204. by Graham R. Smith, Bruno Contreras-Moreira, Xiaodong Zhang, Paul A. Bates posted to cooperativity pca by choonpeng on 2007-01-09 23:50:08 as
	Dynamic switching mechanisms in LOV1 and LOV2 domains of plant phototropins. [My Copy] Biophys J, Vol. 91, No. 10. (15 November 2006), pp. 3630-3639. by P. L. Freddolino, M. Dittrich, K. Schulten posted to pca protein-interaction signaling by choonpeng on 2006-12-27 11:39:18 as
	Dynamite extended: two new services to simplify protein dynamic analysis. [My Copy] Bioinformatics, Vol. 21, No. 14. (15 July 2005), pp. 3174-3175. by C. P. Barrett, M. E. Noble posted to pca web-server by choonpeng on 2006-11-03 12:22:34 as
	Simulations of a Protein Translocation Pore: SecY [My Copy] Biochemistry, Vol. 45, No. 43. (31 October 2006), pp. 13018-13024. by S. Haider, B. A. Hall, M. S. P. Sansom posted to pca protein-translocation by choonpeng on 2006-10-24 13:47:29 as
	Molecular Dynamics Simulation of Protein Folding by Essential Dynamics Sampling: Folding Landscape of Horse Heart Cytochrome c [My Copy] Biophys. J., Vol. 85, No. 5. (1 November 2003), pp. 2865-2871. by Isabella Daidone, Andrea Amadei, Danilo Roccatano, Alfredo D. Nola posted to pca protein-folding by choonpeng on 2006-07-24 07:24:38 as along with 2 people aqeel ttjoseph
	The folding pathway of ubiquitin from all-atom molecular dynamics simulations [My Copy] Biophysical Chemistry, Vol. 111, No. 2. (1 October 2004), pp. 159-171. by Neelan J. Marianayagam, Sophie E. Jackson posted to high-t-md pca by choonpeng on 2006-07-24 02:04:01 as
	Selective excitation of native fluctuations during thermal unfolding simulations: horse heart cytochrome c as a case study. [My Copy] Biophys J, Vol. 84, No. 3. (March 2003), pp. 1876-1883. by D. Roccatano, I. Daidone, M. A. Ceruso, C. Bossa, A. D. Nola posted to high-t-md pca by choonpeng on 2006-07-17 03:47:03 as

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protein-folding	177
modular	117
coarse-grained	111
review	90
protein-interaction	87
protein-domains	83
force-probe-md	64
mechanotransduction	63
flagellar	61
methodology	52
protein-translocation	48
single-molecule-methods	48
allostery	45
cell-adhesion	43
signaling	43
high-t-md	40
ttss	29
nma	28
transmembrane	27
integrin	26
mechanical-unfolding	26
solvent-effects	24
protein-mechanics	22
books	21
protein-stability	19
pca	18
chaperone	16
cytoskeletal-dynamics	16
folding-nucleus	16
cooperativity	15
folding-intermediate	15
web-server	15
go-model	14
bioinformatics	13
ensemble	12
implicit-solvent	12
theoretical	11
software	10
self-assembly	9
denatured-state	8
crowding	7
diffusion	7
multi-scale	7
protein-degradation	7
ig-like	6
kinetics	6
computer-programming	5
protein-secretion	5
salt-bridge	5
protein-dynamics	4
structure-validation	3
science-presentation	1
science-writing	1

choonpeng's pca [18 articles] Export

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