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	Early events in protein folding: Is there something more than hydrophobic burst? [My Copy] Protein science : a publication of the Protein Society, Vol. 17, No. 8. (August 2008), pp. 1424-1433. by C. Camilloni, L. Sutto, D. Provasi, G. Tiana, R. A. Broglia posted to protein-folding by choonpeng on 2008-08-05 11:41:27 as
	Differential stability of beta-sheets and alpha-helices in beta-lactamase: a high temperature molecular dynamics study of unfolding intermediates. [My Copy] Biophys. J., Vol. 65, No. 6. (1 December 1993), pp. 2304-2312. by S. Vijayakumar, S. Vishveshwara, G. Ravishanker, D. L. Beveridge posted to high-t-md protein-folding by choonpeng on 2008-07-22 07:56:59 as
	Characterization of residual structure in the thermally denatured state of barnase by simulation and experiment: description of the folding pathway. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 94, No. 25. (9 December 1997), pp. 13409-13413. by C. J. Bond, K. B. Wong, J. Clarke, A. R. Fersht, V. Daggett posted to folding-nucleus high-t-md protein-folding by choonpeng on 2008-07-19 08:27:28 as
	Predicting the Folding Pathway of Engrailed Homeodomain with a Probabilistic Roadmap Enhanced Reaction-Path Algorithm [My Copy] Biophys. J., Vol. 94, No. 5. (1 March 2008), pp. 1622-1629. by Da-Wei Li, Haijun Yang, Li Han, Shuanghong Huo posted to protein-folding by choonpeng on 2008-07-06 06:31:37 as
	Protein Folding and Unfolding at Atomic Resolution [My Copy] Cell, Vol. 108, No. 4. (22 February 2002), pp. 573-582. by Alan R. Fersht, Valerie Daggett posted to protein-folding by choonpeng on 2008-06-23 07:54:08 as along with 2 people flbarroso yxue
	New insights into FAK signaling and localization based on detection of a FAT domain folding intermediate. [My Copy] Structure (London, England : 1993), Vol. 12, No. 12. (December 2004), pp. 2161-2171. by R. D. Dixon, Y. Chen, F. Ding, et al.S. D. Khare, K. C. Prutzman, M. D. Schaller, S. L. Campbell, N. V. Dokholyan posted to folding-intermediate protein-folding by choonpeng on 2008-06-20 10:21:17 as
	The structure of the transition state for folding of chymotrypsin inhibitor 2 analysed by protein engineering methods: evidence for a nucleation-condensation mechanism for protein folding. [My Copy] Journal of molecular biology, Vol. 254, No. 2. (24 November 1995), pp. 260-288. by L. S. Itzhaki, D. E. Otzen, A. R. Fersht posted to folding-nucleus protein-folding by choonpeng on 2008-06-04 08:37:39 as
	Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution. [My Copy] Science (New York, N.Y.), Vol. 282, No. 5389. (23 October 1998), pp. 740-744. by Y. Duan, P. A. Kollman posted to protein-folding by choonpeng on 2008-06-04 06:09:28 as along with 6 people flbarroso doktornoe Diego_Prada j3xucite allmensch RamuAnandakrishnan
	Using massively parallel simulation and Markovian models to study protein folding: examining the dynamics of the villin headpiece. [My Copy] The Journal of chemical physics, Vol. 124, No. 16. (28 April 2006) by G. Jayachandran, V. Vishal, V. S. Pande posted to protein-folding by choonpeng on 2008-06-03 12:38:30 as
	Protein unfolding and refolding under force: methodologies for nanomechanics. [My Copy] Chemphyschem : a European journal of chemical physics and physical chemistry, Vol. 6, No. 1. (January 2005), pp. 29-34. by B. Samorì, G. Zuccheri, R. Baschieri posted to mechanical-unfolding protein-folding review single-molecule-methods by choonpeng on 2008-06-02 02:38:32 as
	DisProt: the Database of Disordered Proteins. [My Copy] Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007) by M. Sickmeier, J. A. Hamilton, T. LeGall, et al.V. Vacic, M. S. Cortese, A. Tantos, B. Szabo, P. Tompa, J. Chen, V. N. Uversky, Z. Obradovic, A. K. Dunker posted to protein-folding protein-interaction web-server by choonpeng on 2008-05-30 06:37:27 as along with 4 people carlosjavierna chad_davis higueruelo allmensch
	Combining experiment and simulation in protein folding: closing the gap for small model systems [My Copy] Current Opinion in Structural Biology In Folding and Binding / Protein-nucleic acid interactions, Vol. 18, No. 1. (February 2008), pp. 4-9. by Dustin R. Schaeffer, Alan Fersht, Valerie Daggett posted to protein-folding review by choonpeng on 2008-04-07 08:11:42 as along with 1 person doktornoe
	Crosstalk between the Protein Surface and Hydrophobic Core in a Core-swapped Fibronectin Type III Domain [My Copy] Journal of Molecular Biology, Vol. 375, No. 2. (11 January 2008), pp. 560-571. by Kate S. Billings, Robert B. Best, Trevor J. Rutherford, Jane Clarke posted to protein-folding protein-stability by choonpeng on 2008-03-05 09:38:37 as
	The conserved salt bridge linking two C-terminal ?/? units in homodimeric triosephosphate isomerase determines the folding rate of the monomer [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by César A. Reyes-López, Edith González-Mondragón, Claudia G. Benítez-Cardoza, et al.María E. Chánez-Cárdenas, Nallely Cabrera, Ruy Pérez-Montfort, Andrés Hernández-Arana posted to high-t-md protein-folding salt-bridge by choonpeng on 2008-03-04 06:05:20 as
	Protein folding forces [My Copy] Journal of Theoretical Biology, Vol. 251, No. 2. (21 March 2008), pp. 331-347. by B. Nolting, N. Salimi, U. Guth posted to protein-folding by choonpeng on 2008-02-27 02:02:21 as along with 1 person skywalkerus02
	Free energy landscape of protein folding in water: Explicit vs. implicit solvent [My Copy] Proteins: Structure, Function, and Genetics, Vol. 53, No. 2. (2003), pp. 148-161. by Ruhong Zhou posted to protein-folding solvent-effects by choonpeng on 2008-02-24 05:04:52 as along with 5 people chemrahul82 flbarroso RamuAnandakrishnan onufriev msuarezdiez
	FlgM gains structure in living cells. [My Copy] Proc Natl Acad Sci U S A, Vol. 99, No. 20. (1 October 2002), pp. 12681-12684. by M. M. Dedmon, C. N. Patel, G. B. Young, G. J. Pielak posted to flagellar protein-folding by choonpeng on 2008-02-03 13:15:40 as along with 1 person imouthesmp
	Axis-dependent anisotropy in protein unfolding from integrated nonequilibrium single-molecule experiments, analysis, and simulation. [My Copy] Proc Natl Acad Sci U S A (19 December 2007) by Rene A A. Nome, Jason Ming M. Zhao, Wouter D D. Hoff, Norbert F F. Scherer posted to force-probe-md protein-folding single-molecule-methods by choonpeng on 2007-12-27 03:03:08 as
	What determines protein folding type? An investigation of intrinsic structural properties and its implications for understanding folding mechanisms. [My Copy] J Mol Biol, Vol. 370, No. 3. (13 July 2007), pp. 439-448. by B. G. Ma, L. L. Chen, H. Y. Zhang posted to bioinformatics protein-folding by choonpeng on 2007-12-22 06:35:29 as
	Plasticity Within the Obligatory Folding Nucleus of an Immunoglobulin-like Domain [My Copy] Journal of Molecular Biology, Vol. 375, No. 2. (11 January 2008), pp. 547-559. by Ilkka Lappalainen, Michael G. Hurley, Jane Clarke posted to ig-like protein-folding by choonpeng on 2007-12-08 13:54:42 as
	Force-clamp spectroscopy of single-protein monomers reveals the individual unfolding and folding pathways of I27 and ubiquitin. [My Copy] Biophys J, Vol. 93, No. 7. (1 October 2007), pp. 2436-2446. by S. Garcia-Manyes, J. Brujić, C. L. Badilla, J. M. Fernandez posted to protein-folding single-molecule-methods by choonpeng on 2007-11-08 12:11:09 as
	Analysis of X-ray and neutron scattering from biomacromolecular solutions [My Copy] Current Opinion in Structural Biology In Carbohydrates and glycoconjugates / Biophysical methods, Vol. 17, No. 5. (October 2007), pp. 562-571. by Maxim V. Petoukhov, Dmitri I. Svergun posted to modular protein-folding review protein-domains by choonpeng on 2007-11-06 07:10:43 as along with 3 people and 1 group dgront sobolevnrm CameronNeylon baker-group
	The unfolding kinetics of ubiquitin captured with single-molecule force-clamp techniques [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 19. (11 May 2004), pp. 7299-7304. by Michael Schlierf, Hongbin Li, Julio M. Fernandez posted to protein-folding single-molecule-methods by choonpeng on 2007-10-30 11:29:05 as along with 2 people edws devinli
	The role of the turn in beta-hairpin formation during WW domain folding. [My Copy] Protein Sci, Vol. 16, No. 10. (October 2007), pp. 2233-2239. by T. Sharpe, A. L. Jonsson, T. J. Rutherford, V. Daggett, A. R. Fersht posted to high-t-md protein-folding by choonpeng on 2007-10-15 07:55:22 as along with 1 person carlosjavierna
	Central modules of the vaccinia virus complement control protein are not in extensive contact. [My Copy] Biochem J, Vol. 344 Pt 1 (15 November 1999), pp. 167-175. by M. D. Kirkitadze, C. Henderson, N. C. Price, et al.S. M. Kelly, N. P. Mullin, J. Parkinson, D. T. Dryden, P. N. Barlow posted to modular protein-folding by choonpeng on 2007-10-15 04:29:45 as
	Dehydration-driven solvent exposure of hydrophobic surfaces as a driving force in peptide folding. [My Copy] Proc Natl Acad Sci U S A, Vol. 104, No. 39. (25 September 2007), pp. 15230-15235. by I. Daidone, M. B. Ulmschneider, A. Di Nola, A. Amadei, J. C. Smith posted to protein-folding solvent-effects by choonpeng on 2007-10-08 04:58:19 as along with 3 people jjurban barmak7282 onufriev
	Identification of core amino acids stabilizing rhodopsin. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 19. (11 May 2004), pp. 7246-7251. by A. J. Rader, G. Anderson, B. Isin, H. G. Khorana, I. Bahar, J. Klein-Seetharaman posted to nma protein-folding by choonpeng on 2007-10-01 05:50:32 as along with 3 people lna aqeel cen4ik
	Comparison of the transition states for folding of two Ig-like proteins from different superfamilies. [My Copy] J Mol Biol, Vol. 343, No. 4. (29 October 2004), pp. 1111-1123. by C. D. Geierhaas, E. Paci, M. Vendruscolo, J. Clarke posted to protein-folding by choonpeng on 2007-09-30 11:45:57 as
	Forced detachment of the CD2-CD58 complex. [My Copy] Biophys J, Vol. 84, No. 4. (April 2003), pp. 2223-2233. by M. V. Bayas, K. Schulten, D. Leckband posted to force-probe-md protein-folding protein-interaction salt-bridge by choonpeng on 2007-09-04 11:11:08 as
	Influence of temperature, friction, and random forces on folding of the B-domain of staphylococcal protein A: All-atom molecular dynamics in implicit solvent [My Copy] Journal of Computational Chemistry, Vol. 28, No. 6. (2007), pp. 1068-1082. by Anna Jagielska, Harold A. Scheraga posted to protein-folding solvent-effects by choonpeng on 2007-08-31 08:59:20 as along with 2 people onufriev jwagoner
	Protein-folding dynamics: overview of molecular simulation techniques. [My Copy] Annual review of physical chemistry, Vol. 58 (2007), pp. 57-83. by Harold A. Scheraga, Mey Khalili, Adam Liwo posted to coarse-grained protein-folding review by choonpeng on 2007-08-30 11:50:09 as along with 2 people dgront adilson_mohr
	Structural analysis of the complement control protein (CCP) modules of GABA(B) receptor 1a: only one of the two CCP modules is compactly folded. [My Copy] J Biol Chem, Vol. 279, No. 46. (12 November 2004), pp. 48292-48306. by S. Blein, R. Ginham, D. Uhrin, et al.B. O. Smith, D. C. Soares, S. Veltel, R. A. McIlhinney, J. H. White, P. N. Barlow posted to modular protein-folding by choonpeng on 2007-08-21 02:33:33 as
	Protein simulations combining an all-atom force field with a Go term [My Copy] Journal of Physics: Condensed Matter, Vol. 19, No. 28. (2007) by Jan H. Meinke, Ulrich H. E. Hansmann posted to go-model protein-folding by choonpeng on 2007-08-08 08:50:11 as along with 1 person flbarroso
	Energetics of Protein Folding [My Copy] Journal of Molecular Biology, Vol. 371, No. 2. (10 August 2007), pp. 283-301. by Robert L. Baldwin posted to protein-folding review by choonpeng on 2007-08-02 04:05:54 as along with 6 people melo_mcr flbarroso higueruelo mijam yarikson cat_worth
	Nanosecond folding dynamics of a three-stranded beta-sheet. [My Copy] J Am Chem Soc, Vol. 128, No. 49. (13 December 2006), pp. 15836-15842. by Y. Xu, P. Purkayastha, F. Gai posted to protein-folding by choonpeng on 2007-08-02 01:10:07 as
	Characterization of the folding landscape of monomeric lactose repressor: quantitative comparison of theory and experiment. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 41. (11 October 2005), pp. 14569-14574. by P. Das, C. J. Wilson, G. Fossati, P. Wittung-Stafshede, K. S. Matthews, C. Clementi posted to coarse-grained go-model protein-folding protein-domains by choonpeng on 2007-07-30 05:16:11 as
	Folding funnels, binding funnels, and protein function. [My Copy] Protein Sci, Vol. 8, No. 6. (June 1999), pp. 1181-1190. by C. J. Tsai, S. Kumar, B. Ma, R. Nussinov posted to protein-folding protein-interaction review by choonpeng on 2007-07-17 06:52:07 as along with 2 people lna robert
	How similar are protein folding and protein binding nuclei? Examination of vibrational motions of energy hot spots and conserved residues. [My Copy] Biophys J, Vol. 88, No. 3. (March 2005), pp. 1552-1559. by T. Haliloglu, O. Keskin, B. Ma, R. Nussinov posted to protein-folding protein-interaction by choonpeng on 2007-07-15 05:38:04 as along with 4 people and 2 groups barry baaden aqeel eweaver structural_bioinformatics Bioinformatics
	A coarse-grained protein force field for folding and structure prediction [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 69, No. 2. (28 June 2007), pp. 394-408. by Julien Maupetit, P. Tuffery, Philippe Derreumaux posted to coarse-grained protein-folding by choonpeng on 2007-07-14 04:05:48 as along with 2 people edws wouterboomsma
	The protein folding problem: when will it be solved? [My Copy] Current Opinion in Structural Biology In Nucleic acids / Sequences and topology, Vol. 17, No. 3. (June 2007), pp. 342-346. by Ken A. Dill, Banu S. Ozkan, Thomas R. Weikl, John D. Chodera, Vincent A. Voelz posted to protein-folding review by choonpeng on 2007-07-07 13:50:17 as
	Kinetics and thermodynamics of folding of a de novo designed four-helix bundle protein. [My Copy] J Mol Biol, Vol. 263, No. 2. (25 October 1996), pp. 323-343. by Z. Guo, D. Thirumalai posted to coarse-grained protein-folding by choonpeng on 2007-07-06 01:53:32 as
	Topological and energetic factors: what determines the structural details of the transition state ensemble and “en-route” intermediates for protein folding? an investigation for small globular proteins1 [My Copy] Journal of Molecular Biology, Vol. 298, No. 5. (19 May 2000), pp. 937-953. by Cecilia Clementi, Hugh Nymeyer, José N. Onuchic posted to coarse-grained go-model protein-folding by choonpeng on 2007-07-01 02:56:46 as along with 2 people edws aqeel
	Protein folding: Then and now. [My Copy] Arch Biochem Biophys, Vol. 469, No. 1. (1 January 2008), pp. 4-19. by Yiwen Chen, Feng Ding, Huifen Nie, et al.Adrian W. W. Serohijos, Shantanu Sharma, Kyle C. C. Wilcox, Shuangye Yin, Nikolay V. V. Dokholyan posted to coarse-grained protein-folding by choonpeng on 2007-06-30 08:02:36 as along with 1 person and 8 groups shantanu structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
	The origins of asymmetry in the folding transition states of protein L and protein G. [My Copy] Protein Sci, Vol. 11, No. 10. (October 2002), pp. 2351-2361. by J. Karanicolas, C. L. Brooks posted to coarse-grained protein-folding by choonpeng on 2007-06-25 13:51:31 as along with 2 people yalexeev iantunbridge
	Molecular dynamics simulation of the SH3 domain aggregation suggests a generic amyloidogenesis mechanism. [My Copy] J Mol Biol, Vol. 324, No. 4. (6 December 2002), pp. 851-857. by F. Ding, N. V. Dokholyan, S. V. Buldyrev, H. E. Stanley, E. I. Shakhnovich posted to coarse-grained protein-folding by choonpeng on 2007-06-25 13:12:19 as
	Direct molecular dynamics observation of protein folding transition state ensemble. [My Copy] Biophys J, Vol. 83, No. 6. (December 2002), pp. 3525-3532. by F. Ding, N. V. Dokholyan, S. V. Buldyrev, H. E. Stanley, E. I. Shakhnovich posted to coarse-grained protein-folding by choonpeng on 2007-06-25 13:00:41 as along with 1 person apaydin
	Statistical coil model of the unfolded state: Resolving the reconciliation problem [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 37. (13 September 2005), pp. 13099-13104. by Abhishek K. Jha, Andrés Colubri, Karl F. Freed, Tobin R. Sosnick posted to protein-folding by choonpeng on 2007-06-25 06:24:17 as along with 3 people yxue apaydin allmensch
	alpha-helix formation: discontinuous molecular dynamics on an intermediate-resolution protein model. [My Copy] Proteins, Vol. 44, No. 3. (15 August 2001), pp. 344-360. by A. Voegler Smith, C. K. Hall posted to coarse-grained protein-folding by choonpeng on 2007-06-25 02:56:55 as
	Spontaneous fibril formation by polyalanines; discontinuous molecular dynamics simulations. [My Copy] J Am Chem Soc, Vol. 128, No. 6. (15 February 2006), pp. 1890-1901. by H. D. Nguyen, C. K. Hall posted to coarse-grained protein-folding by choonpeng on 2007-06-25 02:52:57 as
	Contact pair dynamics during folding of two small proteins: chicken villin head piece and the Alzheimer protein beta-amyloid. [My Copy] The Journal of chemical physics, Vol. 120, No. 3. (15 January 2004), pp. 1602-1612. by A. Mukherjee, B. Bagchi posted to coarse-grained protein-folding by choonpeng on 2007-06-25 02:30:32 as along with 2 people and 2 groups flbarroso ana structural_bioinformatics Bioinformatics

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protein-folding	177
modular	117
coarse-grained	111
review	90
protein-interaction	87
protein-domains	83
force-probe-md	64
mechanotransduction	63
flagellar	61
methodology	52
protein-translocation	48
single-molecule-methods	48
allostery	45
signaling	42
cell-adhesion	41
high-t-md	40
ttss	29
nma	28
integrin	26
mechanical-unfolding	26
transmembrane	26
solvent-effects	24
protein-mechanics	22
books	21
protein-stability	19
pca	18
chaperone	16
cytoskeletal-dynamics	16
folding-nucleus	16
cooperativity	15
folding-intermediate	15
web-server	15
go-model	14
bioinformatics	13
ensemble	12
implicit-solvent	12
theoretical	11
software	10
self-assembly	9
denatured-state	8
crowding	7
diffusion	7
multi-scale	7
protein-degradation	7
ig-like	6
kinetics	6
computer-programming	5
protein-secretion	5
salt-bridge	5
protein-dynamics	4
structure-validation	3
science-presentation	1
science-writing	1

choonpeng's protein-folding [177 articles] Export

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