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choonpeng's protein-interaction [84 articles]

Recent papers added to choonpeng's library classified by the tag protein-interaction. You can also see everyone's protein-interaction.
  • Solution Structure and Sugar-Binding Mechanism of Mouse Latrophilin-1 RBL: a 7TM Receptor-Attached Lectin-Like Domain
    Structure, Vol. 16, No. 6. (11 June 2008), pp. 944-953.
    by Ioannis Vakonakis, Tobias Langenhan, Simone Prömel, Andreas Russ, Iain D Campbell
    posted to protein-interaction by choonpeng on 2008-06-11 10:02:32 as ***
  • DisProt: the Database of Disordered Proteins.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by M Sickmeier, JA Hamilton, T LeGall, V Vacic, MS Cortese, A Tantos, B Szabo, P Tompa, J Chen, VN Uversky, Z Obradovic, AK Dunker
    posted to web-server protein-interaction protein-folding by choonpeng on 2008-05-30 06:37:27 as *** along with 2 people higueruelo chad_davis
  • Design of protein function leaps by directed domain interface evolution
    Proceedings of the National Academy of Sciences (29 April 2008), 0801097105.
    by Jin Huang, Akiko Koide, Koki Makabe, Shohei Koide
    posted to protein-interaction multi-domain by choonpeng on 2008-05-07 02:56:16 as ** along with 3 people marck zwang cmzmasek
  • Protein-Protein Interaction Regulates Proteins' Mechanical Stability.
    Journal of molecular biology (28 March 2008)
    by Yi Cao, Teri Yoo, Shulin Zhuang, Hongbin Li
    posted to single-molecule-techniques protein-mechanics protein-interaction cell-adhesion by choonpeng on 2008-04-27 12:28:26 as **** along with 1 person imtechnology
  • Dynamic property is a key determinant for protein-protein interactions
    Proteins: Structure, Function, and Bioinformatics, Vol. 70, No. 4. (2008), pp. 1323-1331.
    by Hongjun Bai, Wenzhe Ma, Shiyong Liu, Luhua Lai
    posted to protein-interaction by choonpeng on 2008-02-19 06:49:30 as **
  • Comprehensive statistical analysis of residues interaction specificity at protein-protein interfaces.
    Proteins, Vol. 67, No. 4. (1 June 2007), pp. 1060-1077.
    by A Anashkina, E Kuznetsov, N Esipova, V Tumanyan
    posted to protein-interaction by choonpeng on 2008-01-13 12:37:17 as *** along with 2 people bicko chad_davis
  • Role of linkers in communication between protein modules
    Current Opinion in Chemical Biology, Vol. 4, No. 1. (1 February 2000), pp. 22-27.
    by Rajesh S Gokhale, Chaitan Khosla
    posted to modular protein-interaction review signaling by choonpeng on 2008-01-13 12:02:26 as read
  • Structural and mechanistic analysis of protein interactions in module 3 of the 6-deoxyerythronolide B synthase.
    Chem Biol, Vol. 14, No. 8. (August 2007), pp. 931-943.
    by Y Tang, AY Chen, CY Kim, DE Cane, C Khosla
    posted to modular protein-interaction by choonpeng on 2008-01-13 11:52:09 as ***
  • Dynamic personalities of proteins
    Nature, Vol. 450, No. 7172. (12 December 2007), pp. 964-972.
    by Katherine Henzler-Wildman, Dorothee Kern
    posted to protein-interaction review by choonpeng on 2007-12-18 08:05:47 as read along with 11 people and 1 group GeeSharpMinor higueruelo chad_davis allmensch rsantana cjeans sobolevnrm wilbur mijam kjell phoenixzxl baker-group
  • Complement C1q-target proteins recognition is inhibited by electric moment effectors
    Journal of Molecular Recognition, Vol. 20, No. 5. (2007), pp. 405-415.
    by Lubka Roumenina, Svetlana Bureeva, Alexander Kantardjiev, David Karlinsky, Julian E Andia-Pravdivy, Robert Sim, Alexander Kaplun, Michael Popov, Uday Kishore, Boris Atanasov
    posted to electrostatics protein-interaction by choonpeng on 2007-12-12 08:53:20 as ***
  • Molecular Crowding Inhibits Intramolecular Breathing Motions in Proteins
    Journal of Molecular Biology, Vol. 375, No. 2. (11 January 2008), pp. 529-546.
    by Lee Makowski, Diane J Rodi, Suneeta Mandava, David D Minh, David B Gore, Robert F Fischetti
    posted to experimental protein-interaction protein-stability by choonpeng on 2007-12-08 14:11:05 as *** along with 1 person operon
  • Signaling complexes: biophysical constraints on intracellular communication.
    Annu Rev Biophys Biomol Struct, Vol. 27 (1998), pp. 59-75.
    by D Bray
    posted to protein-interaction review by choonpeng on 2007-10-05 09:34:59 as read
  • Conformational spread: the propagation of allosteric states in large multiprotein complexes.
    Annu Rev Biophys Biomol Struct, Vol. 33 (2004), pp. 53-73.
    by D Bray, T Duke
    posted to protein-interaction review by choonpeng on 2007-10-05 09:32:59 as *** along with 3 people evanse leemary4 cactus
  • A more complete, complexed and structured interactome.
    Curr Opin Struct Biol (14 June 2007)
    by Damien Devos, Robert B B Russell
    posted to protein-interaction review by choonpeng on 2007-10-05 05:09:47 as **** along with 4 people chad_davis balicea skhadar ruvido
  • Optimization of electrostatic interactions in protein-protein complexes.
    Biophys J (10 August 2007)
    by Kelly Brock, Kemper Talley, Kacey Coley, Petras Kundrotas, Emil Alexov
    posted to protein-interaction by choonpeng on 2007-09-04 13:18:24 as *** along with 1 person and 1 group sobolevnrm baker-group
  • Forced detachment of the CD2-CD58 complex.
    Biophys J, Vol. 84, No. 4. (April 2003), pp. 2223-2233.
    by MV Bayas, K Schulten, D Leckband
    posted to force-probe-md protein-folding protein-interaction salt-bridge by choonpeng on 2007-09-04 11:11:08 as read
  • WATGEN: An algorithm for modeling water networks at protein-protein interfaces
    Journal of Computational Chemistry, Vol. 28, No. 14. (2007), pp. 2241-2251.
    by Huynh-Hoa Bui, Alexandra J Schiewe, Ian S Haworth
    posted to protein-interaction by choonpeng on 2007-08-21 01:57:45 as ***
  • Hot spots-A review of the protein-protein interface determinant amino-acid residues.
    Proteins, Vol. 68, No. 4. (1 June 2007), pp. 803-812.
    by Irina S S Moreira, Pedro A A Fernandes, Maria J J Ramos
    posted to protein-interaction by choonpeng on 2007-08-09 08:07:17 as read along with 4 people timg higueruelo bicko IrinaMoreira
  • How Different are Structurally Flexible and Rigid Binding Sites? Sequence and Structural Features Discriminating Proteins that Do and Do not Undergo Conformational Change upon Ligand Binding.
    J Mol Biol (29 September 2006)
    by Kannan Gunasekaran, Ruth Nussinov
    posted to protein-interaction by choonpeng on 2007-08-07 05:13:35 as *** along with 8 people and 1 group nickolay higueruelo BragilMassoud dgruiz radestock lna yongzhao weisblum TSRI_MGL
  • Folding funnels, binding funnels, and protein function.
    Protein Sci, Vol. 8, No. 6. (June 1999), pp. 1181-1190.
    by CJ Tsai, S Kumar, B Ma, R Nussinov
    posted to protein-folding protein-interaction review by choonpeng on 2007-07-17 06:52:07 as read along with 2 people lna robert
  • How similar are protein folding and protein binding nuclei? Examination of vibrational motions of energy hot spots and conserved residues.
    Biophys J, Vol. 88, No. 3. (March 2005), pp. 1552-1559.
    by T Haliloglu, O Keskin, B Ma, R Nussinov
    posted to protein-folding protein-interaction by choonpeng on 2007-07-15 05:38:04 as *** along with 4 people and 2 groups barry baaden aqeel eweaver structural_bioinformatics Bioinformatics
  • Structures in systems biology.
    Curr Opin Struct Biol (14 June 2007)
    by Pedro Beltrao, Christina Kiel, Luis Serrano
    posted to protein-interaction by choonpeng on 2007-07-10 01:23:58 as read
  • Organization and functions of interacting domains for signaling by protein-protein interactions.
    Sci STKE, Vol. 2003, No. 209. (18 November 2003)
    by E Buck, R Iyengar
    posted to protein-interaction signaling by choonpeng on 2007-06-29 05:53:59 as read
  • notes Network analysis of protein dynamics.
    FEBS Lett, Vol. 581, No. 15. (24 July 2007), pp. 2776-2782.
    by C Böde, IA Kovács, MS Szalay, R Palotai, T Korcsmáros, P Csermely
    posted to protein-interaction review by choonpeng on 2007-06-12 09:56:20 as read along with 3 people george_g jlh64 Diego_Prada
  • SCOPPI: a structural classification of protein-protein interfaces.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by C Winter, A Henschel, WK Kim, M Schroeder
    posted to protein-interaction web-server by choonpeng on 2007-06-05 04:02:24 as read along with 6 people and 4 groups ana kuhn bicko chad_davis marcius Evangelia structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • Interaction preferences across protein-protein interfaces of obligatory and non-obligatory components are different.
    BMC Struct Biol, Vol. 5 (16 August 2005)
    by S De, O Krishnadev, N Srinivasan, N Rekha
    posted to protein-interaction by choonpeng on 2007-06-05 04:00:35 as *** along with 4 people marti higueruelo bicko medic0747
  • Stereospecific interactions of proline residues in protein structures and complexes.
    J Mol Biol, Vol. 331, No. 4. (22 August 2003), pp. 925-940.
    by R Bhattacharyya, P Chakrabarti
    posted to protein-interaction by choonpeng on 2007-06-04 05:20:29 as read
  • Interaction geometry involving planar groups in protein-protein interfaces
    Proteins: Structure, Function, and Bioinformatics, Vol. 67, No. 1. (2007), pp. 84-97.
    by Rudra P Saha, Rajasri Bhattacharyya, Pinak Chakrabarti
    posted to protein-interaction by choonpeng on 2007-06-03 08:59:07 as read along with 2 people higueruelo bicko
  • Reading protein modifications with interaction domains
    Nature Reviews Molecular Cell Biology, Vol. 7, No. 7., pp. 473-483.
    by Bruce T Seet, Ivan Dikic, Ming-Ming Zhou, Tony Pawson
    posted to modular protein-interaction by choonpeng on 2007-06-01 14:15:00 as *** along with 3 people laurabailey cjeans mingzhi
  • Analysis of homodimeric protein interfaces by graph-spectral methods.
    Protein Eng, Vol. 15, No. 4. (April 2002), pp. 265-277.
    by KV Brinda, N Kannan, S Vishveshwara
    posted to protein-interaction by choonpeng on 2007-05-29 02:13:03 as **** along with 2 people bicko mz2
  • Insights into the quaternary association of proteins through structure graphs: a case study of lectins.
    Biochem J, Vol. 391, No. Pt 1. (1 October 2005), pp. 1-15.
    by KV Brinda, A Surolia, S Vishveshwara
    posted to protein-interaction by choonpeng on 2007-05-29 02:01:09 as **** along with 1 person bicko
  • Uncovering Network Systems Within Protein Structures
    Journal of Molecular Biology, Vol. 334, No. 4. (05 December 2003), pp. 781-791.
    by Lesley H Greene, Victoria A Higman
    posted to protein-interaction by choonpeng on 2007-05-28 14:03:46 as read
  • Protein-protein interactions: structurally conserved residues distinguish between binding sites and exposed protein surfaces.
    Proc Natl Acad Sci U S A, Vol. 100, No. 10. (13 May 2003), pp. 5772-5777.
    by B Ma, T Elkayam, H Wolfson, R Nussinov
    posted to protein-interaction by choonpeng on 2007-05-28 13:58:29 as *** along with 8 people and 2 groups mdimmic barry bicko lyongu nickolay cjeans carlescorbi ladab structural_bioinformatics Bioinformatics
  • Structure networks of <I>E. coli</I> glutaminyl-tRNA synthetase: Effects of ligand binding
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by R Sathyapriya, Saraswathi Vishveshwara
    posted to protein-interaction protein-stability by choonpeng on 2007-05-21 07:33:06 as **** along with 1 person naitsabes
  • Characterization of interfacial solvent in protein complexes and contribution of <I>wet spots</I> to the interface description
    Proteins: Structure, Function, and Bioinformatics, Vol. 67, No. 4. (2007), pp. 1087-1095.
    by Joan Teyra, MT Pisabarro
    posted to protein-interaction solvent-effects by choonpeng on 2007-05-21 07:20:20 as read along with 3 people jteyra marti bicko
  • Topology of small-world networks of protein-protein complex structures.
    Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1311-1315.
    by A Del-Sol, H Fujihashi, P O'Meara
    posted to protein-interaction by choonpeng on 2007-05-13 10:11:14 as read along with 2 people higueruelo bicko
  • On Itinerant Water Molecules and Detectability of Protein-Protein Interfaces through Comparative Analysis of Homologues
    Journal of Molecular Biology, Vol. 369, No. 2. (1 June 2007), pp. 584-595.
    by I Mihalek, I Res, O Lichtarge
    posted to protein-interaction by choonpeng on 2007-05-08 16:02:17 as read
  • Similar binding sites and different partners: implications to shared proteins in cellular pathways.
    Structure, Vol. 15, No. 3. (March 2007), pp. 341-354.
    by O Keskin, R Nussinov
    posted to protein-interaction protein-organization by choonpeng on 2007-05-04 17:42:03 as read along with 3 people higueruelo bicko marti
  • Small-world network approach to identify key residues in protein-protein interaction.
    Proteins, Vol. 58, No. 3. (15 February 2005), pp. 672-682.
    by A Del-Sol, P O'Meara
    posted to protein-interaction by choonpeng on 2007-04-19 03:11:41 as read along with 2 people higueruelo bicko
  • Survey of the geometric association of domain-domain interfaces
    Proteins: Structure, Function, and Bioinformatics, Vol. 61, No. 4. (2005), pp. 1075-1088.
    by Wan K Kim, Jon C Ison
    posted to multi-domain protein-interaction by choonpeng on 2007-04-12 11:40:48 as *** along with 1 person j3xucite
  • A dissection of specific and non-specific protein-protein interfaces.
    J Mol Biol, Vol. 336, No. 4. (27 February 2004), pp. 943-955.
    by RP Bahadur, P Chakrabarti, F Rodier, J Janin
    posted to protein-interaction by choonpeng on 2007-04-11 11:11:43 as *** along with 4 people higueruelo bicko drastic marti
  • The effect of protein complexation on the mechanical stability of im9.
    Biophys J, Vol. 92, No. 9. (1 May 2007)
    by E Hann, N Kirkpatrick, C Kleanthous, DA Smith, SE Radford, DJ Brockwell
    posted to protein-interaction protein-mechanics single-molecule-techniques by choonpeng on 2007-04-11 08:20:09 as read
  • Disruption of Interdomain Interactions via Partial Calcium Occupancy of Calmodulin
    Biochemistry, Vol. 46, No. 15. (17 April 2007), pp. 4580-4588.
    by CB Boschek, TC Squier, DJ Bigelow
    posted to multi-domain protein-interaction by choonpeng on 2007-04-10 16:25:55 as read
  • iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions
    Bioinformatics, Vol. 21, No. 3. (01 February 2005), 410.
    by Robert D Finn, Mhairi Marshall, Alex Bateman
    posted to bioinformatics multi-domain protein-interaction web-server by choonpeng on 2007-04-07 05:28:00 as read along with 5 people and 2 groups mdimmic barry chad_davis massivemayhem antonkratz structural_bioinformatics Bioinformatics
  • SCOWLP: a web-based database for detailed characterization and visualization of protein interfaces.
    BMC Bioinformatics, Vol. 7, No. 1. (2 March 2006)
    by Joan Teyra, Andreas Doms, Michael Schroeder, M Teresa T Pisabarro
    posted to protein-interaction web-server by choonpeng on 2007-03-27 07:57:22 as *** along with 4 people and 2 groups jteyra jwm bicko chad_davis Radiation_Damage Stressosome
  • The Many Faces of Protein–Protein Interactions: A Compendium of Interface Geometry
    PLoS Computational Biology, Vol. 2, No. 9. (1 September 2006), e124.
    by Wan K Kim, Andreas Henschel, Christof Winter, Michael Schroeder
    posted to protein-interaction by choonpeng on 2007-03-27 07:55:43 as read along with 7 people and 2 groups marck allmensch wilbur bicko chad_davis marcius Evangelia BioinfoCIPF SGU-CIPF
  • Docking protein domains in contact space
    BMC Bioinformatics, Vol. 7, No. 1. (21 June 2006), 310.
    by Stefano Lise, Alice Walker-Taylor, David T Jones
    posted to multi-domain protein-interaction by choonpeng on 2007-03-27 05:17:47 as read along with 4 people vavi bicko chad_davis martainn
  • Protein-protein docking with a reduced protein model accounting for side-chain flexibility.
    Protein Sci, Vol. 12, No. 6. (June 2003), pp. 1271-1282.
    by M Zacharias
    posted to coarse-grained protein-interaction by choonpeng on 2007-03-12 08:09:50 as *** along with 2 people blackbart bluvsh1
  • PIER: Protein interface recognition for structural proteomics
    Proteins: Structure, Function, and Bioinformatics, Vol. 67, No. 2. (2007), pp. 400-417.
    by Irina Kufareva, Levon Budagyan, Eugene Raush, Maxim Totrov, Ruben Abagyan
    posted to protein-interaction by choonpeng on 2007-03-10 03:44:41 as *** along with 2 people bicko emidio_capriotti
  • Protein-protein interactions: organization, cooperativity and mapping in a bottom-up Systems Biology approach.
    Phys Biol, Vol. 2, No. 1-2. (June 2005)
    by Ozlem Keskin, Buyong Ma, Kristina Rogale, K Gunasekaran, Ruth Nussinov
    posted to cooperativity protein-interaction by choonpeng on 2007-02-26 06:28:00 as *** along with 2 people higueruelo bicko
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