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choonpeng's single-molecule-techniques [44 articles]

Recent papers added to choonpeng's library classified by the tag single-molecule-techniques. You can also see everyone's single-molecule-techniques.
  • Role of multiple bonds between the single cell adhesion molecules, nectin and cadherin, revealed by high sensitive force measurements.
    Journal of molecular biology, Vol. 367, No. 4. (6 April 2007), pp. 996-1006.
    by Y Tsukasaki, K Kitamura, K Shimizu, AH Iwane, Y Takai, T Yanagida
    posted to single-molecule-techniques cell-adhesion by choonpeng on 2008-06-30 04:04:59 as ***
  • Single pilus motor forces exceed 100 pN.
    Proc Natl Acad Sci U S A, Vol. 99, No. 25. (10 December 2002), pp. 16012-16017.
    by B Maier, L Potter, M So, CD Long, HS Seifert, MP Sheetz
    posted to single-molecule-techniques by choonpeng on 2008-06-26 03:34:42 as ***
  • Protein unfolding and refolding under force: methodologies for nanomechanics.
    Chemphyschem : a European journal of chemical physics and physical chemistry, Vol. 6, No. 1. (January 2005), pp. 29-34.
    by B Samorì, G Zuccheri, R Baschieri
    posted to single-molecule-techniques review protein-folding mechanical-unfolding by choonpeng on 2008-06-02 02:38:32 as ****
  • Mechanical unfolding intermediates in titin modules
    Nature, Vol. 402, No. 6757. (4 November 1999), pp. 100-103.
    by Piotr E Marszalek, Hui Lu, Hongbin Li, Mariano Carrion-Vazquez, Andres F Oberhauser, Klaus Schulten, Julio M Fernandez
    posted to single-molecule-techniques force-probe-md by choonpeng on 2008-05-03 12:53:37 as **** along with 1 person and 1 group grahamc ParkinsonLab_at_MaRS
  • Pulling single molecules of titin by AFM-recent advances and physiological implications.
    Pflügers Archiv : European journal of physiology, Vol. 456, No. 1. (April 2008), pp. 101-115.
    by WA Linke, A Grützner
    posted to single-molecule-techniques review mechanotransduction by choonpeng on 2008-05-03 09:47:40 as ***
  • Protein-Protein Interaction Regulates Proteins' Mechanical Stability.
    Journal of molecular biology (28 March 2008)
    by Yi Cao, Teri Yoo, Shulin Zhuang, Hongbin Li
    posted to single-molecule-techniques protein-mechanics protein-interaction cell-adhesion by choonpeng on 2008-04-27 12:28:26 as **** along with 1 person imtechnology
  • Extending Bell's model: how force transducer stiffness alters measured unbinding forces and kinetics of molecular complexes
    Biophys. J. (4 January 2008), biophysj.107.114454.
    by Emily B Walton, Sunyoung Lee, Krystyn J Van Vliet
    posted to force-probe-md single-molecule-techniques by choonpeng on 2008-04-18 12:40:24 as *** along with 2 people bobturner paulschlesinger
  • Revealing the bifurcation in the unfolding pathways of GFP by using single-molecule experiments and simulations.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 51. (18 December 2007), pp. 20268-20273.
    by M Mickler, RI Dima, H Dietz, C Hyeon, D Thirumalai, M Rief
    posted to force-probe-md single-molecule-techniques by choonpeng on 2008-04-14 01:37:12 as ***
  • Mechanical unfoldons as building blocks of maltose-binding protein.
    Journal of molecular biology, Vol. 378, No. 2. (25 April 2008), pp. 447-458.
    by M Bertz, M Rief
    posted to protein-mechanics single-molecule-techniques by choonpeng on 2008-04-14 01:22:09 as ****
  • Probing the mechanical stability of proteins using the atomic force microscope.
    Biochem Soc Trans, Vol. 35, No. Pt 6. (December 2007), pp. 1564-1568.
    by DJ Brockwell
    posted to mechanical-unfolding protein-mechanics review single-molecule-techniques by choonpeng on 2008-03-09 04:33:52 as read
  • Viscoelastic study of the mechanical unfolding of a protein by AFM.
    Biophys J, Vol. 91, No. 2. (15 July 2006)
    by M Kawakami, K Byrne, DJ Brockwell, SE Radford, DA Smith
    posted to mechanical-unfolding single-molecule-techniques by choonpeng on 2008-03-09 04:11:53 as ***
  • Solvent molecules bridge the mechanical unfolding transition state of a protein.
    Proc Natl Acad Sci U S A, Vol. 105, No. 9. (4 March 2008), pp. 3185-3190.
    by L Dougan, G Feng, H Lu, JM Fernandez
    posted to mechanical-unfolding single-molecule-techniques solvent-effects by choonpeng on 2008-03-09 04:03:59 as read along with 1 person kallberg
  • Single-molecule detection of structural changes during Per-Arnt-Sim (PAS) domain activation.
    Proc Natl Acad Sci U S A, Vol. 103, No. 31. (1 August 2006), pp. 11561-11566.
    by JM Zhao, H Lee, RA Nome, S Majid, NF Scherer, WD Hoff
    posted to signaling single-molecule-techniques by choonpeng on 2008-02-24 06:19:54 as ***
  • Single-molecule force spectroscopy reveals a mechanically stable protein fold and the rational tuning of its mechanical stability.
    Proc Natl Acad Sci U S A, Vol. 104, No. 22. (29 May 2007), pp. 9278-9283.
    by D Sharma, O Perisic, Q Peng, Y Cao, C Lam, H Lu, H Li
    posted to force-probe-md mechanical-unfolding protein-mechanics single-molecule-techniques by choonpeng on 2008-02-22 10:45:31 as read
  • Mechanical biochemistry of proteins one molecule at a time.
    J Biol Chem (14 January 2008)
    by Andres F F Oberhauser, Mariano Carrión-Vázquez
    posted to single-molecule-techniques by choonpeng on 2008-01-22 03:10:47 as ***
  • A toy model of polymer stretching
    The Journal of Chemical Physics, Vol. 125, No. 8. (2006)
    by Carlo Guardiani, Franco Bagnoli
    posted to monte-carlo single-molecule-techniques theoretical by choonpeng on 2007-12-31 06:07:56 as read
  • Axis-dependent anisotropy in protein unfolding from integrated nonequilibrium single-molecule experiments, analysis, and simulation.
    Proc Natl Acad Sci U S A (19 December 2007)
    by Rene A A Nome, Jason Ming M Zhao, Wouter D D Hoff, Norbert F F Scherer
    posted to force-probe-md protein-folding single-molecule-techniques by choonpeng on 2007-12-27 03:03:08 as read
  • Coiled-coil nanomechanics and uncoiling and unfolding of the superhelix and alpha-helices of myosin.
    Biophys J, Vol. 90, No. 8. (15 April 2006), pp. 2852-2866.
    by DD Root, VK Yadavalli, JG Forbes, K Wang
    posted to nanobiology single-molecule-techniques by choonpeng on 2007-12-23 13:23:30 as ****
  • Past, present and future of atomic force microscopy in life sciences and medicine
    Journal of Molecular Recognition, Vol. 20, No. 6. (2007), pp. 418-431.
    by Pierre Parot, Yves F Dufrêne, Peter Hinterdorfer, Christian Le Grimellec, Daniel Navajas, Jean-Luc Pellequer, Simon Scheuring
    posted to review single-molecule-techniques by choonpeng on 2007-12-14 13:16:06 as read
  • High-speed atomic force microscopy for observing dynamic biomolecular processes
    Journal of Molecular Recognition, Vol. 20, No. 6. (2007), pp. 448-458.
    by Toshio Ando, Takayuki Uchihashi, Noriyuki Kodera, Daisuke Yamamoto, Masaaki Taniguchi, Atsushi Miyagi, Hayato Yamashita
    posted to nanobiology review single-molecule-techniques by choonpeng on 2007-12-14 13:14:59 as read
  • Optical torque wrench: angular trapping, rotation, and torque detection of quartz microparticles.
    Phys Rev Lett, Vol. 92, No. 19. (14 May 2004)
    by A La Porta, MD Wang
    posted to single-molecule-techniques by choonpeng on 2007-11-09 09:23:13 as *** along with 1 person rodney
  • Force-clamp spectroscopy of single-protein monomers reveals the individual unfolding and folding pathways of I27 and ubiquitin.
    Biophys J, Vol. 93, No. 7. (1 October 2007), pp. 2436-2446.
    by S Garcia-Manyes, J Brujić, CL Badilla, JM Fernandez
    posted to protein-folding single-molecule-techniques by choonpeng on 2007-11-08 12:11:09 as read
  • High-resolution, single-molecule measurements of biomolecular motion.
    Annu Rev Biophys Biomol Struct, Vol. 36 (2007), pp. 171-190.
    by WJ Greenleaf, MT Woodside, SM Block
    posted to single-molecule-techniques review experimental by choonpeng on 2007-11-06 10:32:49 as read along with 1 person yusdi
  • The unfolding kinetics of ubiquitin captured with single-molecule force-clamp techniques.
    Proc Natl Acad Sci U S A, Vol. 101, No. 19. (11 May 2004), pp. 7299-7304.
    by M Schlierf, H Li, JM Fernandez
    posted to protein-folding single-molecule-techniques by choonpeng on 2007-10-30 11:29:05 as read
  • Direct measurement of torque in an optical trap and its application to double-strand DNA.
    Phys Rev Lett, Vol. 97, No. 5. (4 August 2006)
    by L Oroszi, P Galajda, H Kirei, S Bottka, P Ormos
    posted to single-molecule-techniques by choonpeng on 2007-09-07 08:57:46 as read
  • The mechanical stability of ubiquitin is linkage dependent.
    Nat Struct Biol, Vol. 10, No. 9. (September 2003), pp. 738-743.
    by M Carrion-Vazquez, H Li, H Lu, PE Marszalek, AF Oberhauser, JM Fernandez
    posted to protein-mechanics single-molecule-techniques by choonpeng on 2007-08-26 14:25:22 as read
  • Experiments Suggest that Simulations May Overestimate Electrostatic Contributions to the Mechanical Stability of a Fibronectin Type III Domain.
    J Mol Biol (9 June 2007)
    by Sean P P Ng, Jane Clarke
    posted to force-probe-md single-molecule-techniques by choonpeng on 2007-08-03 09:41:10 as read along with 1 person and 1 group cat_worth structural_bioinformatics
  • Pulling geometry defines the mechanical resistance of a beta-sheet protein.
    Nat Struct Biol, Vol. 10, No. 9. (September 2003), pp. 731-737.
    by DJ Brockwell, E Paci, RC Zinober, GS Beddard, PD Olmsted, DA Smith, RN Perham, SE Radford
    posted to force-probe-md implicit-solvent single-molecule-techniques by choonpeng on 2007-06-19 10:47:51 as read along with 1 person ruudvanleeuwen
  • The remarkable mechanical strength of polycystin-1 supports a direct role in mechanotransduction.
    J Mol Biol, Vol. 349, No. 4. (17 June 2005), pp. 861-871.
    by JR Forman, S Qamar, E Paci, RN Sandford, J Clarke
    posted to mechanotransduction protein-mechanics single-molecule-techniques by choonpeng on 2007-06-18 14:55:18 as read
  • The nanomechanics of polycystin-1 extracellular region.
    J Biol Chem, Vol. 280, No. 49. (9 December 2005), pp. 40723-40730.
    by F Qian, W Wei, G Germino, A Oberhauser
    posted to mechanotransduction protein-mechanics single-molecule-techniques by choonpeng on 2007-06-18 14:54:43 as read
  • Probing a moving target with a plastic unfolding intermediate of an ankyrin-repeat protein.
    Proc Natl Acad Sci U S A (2 May 2007)
    by Nicolas D D Werbeck, Laura S S Itzhaki
    posted to protein-folding single-molecule-techniques by choonpeng on 2007-05-09 02:41:57 as **
  • Signatures of hydrophobic collapse in extended proteins captured with force spectroscopy.
    Proc Natl Acad Sci U S A (30 April 2007)
    by Kirstin A A Walther, Frauke Gräter, Lorna Dougan, Carmen L L Badilla, Bruce J J Berne, Julio M M Fernandez
    posted to protein-folding single-molecule-techniques by choonpeng on 2007-05-09 02:33:45 as ***
  • The effect of protein complexation on the mechanical stability of im9.
    Biophys J, Vol. 92, No. 9. (1 May 2007)
    by E Hann, N Kirkpatrick, C Kleanthous, DA Smith, SE Radford, DJ Brockwell
    posted to protein-interaction protein-mechanics single-molecule-techniques by choonpeng on 2007-04-11 08:20:09 as read
  • Mechanically unfolding the small, topologically simple protein L.
    Biophys J, Vol. 89, No. 1. (July 2005), pp. 506-519.
    by DJ Brockwell, GS Beddard, E Paci, DK West, PD Olmsted, DA Smith, SE Radford
    posted to protein-folding single-molecule-techniques by choonpeng on 2007-04-10 15:47:12 as ***
  • Dwell-Time Distribution Analysis of Polyprotein Unfolding Using Force-Clamp Spectroscopy.
    Biophys J, Vol. 92, No. 8. (April 2007), pp. 2896-2903.
    by Jasna Brujic, Rodolfo I Z I Hermans, Sergi Garcia-Manyes, Kirstin A A Walther, Julio M M Fernandez
    posted to modular protein-mechanics single-molecule-techniques by choonpeng on 2007-03-27 01:34:56 as ***
  • Mechanical Unfolding of TNfn3: The Unfolding Pathway of a fnIII Domain Probed by Protein Engineering, AFM and MD Simulation
    Journal of Molecular Biology, Vol. 350, No. 4. (22 July 2005), pp. 776-789.
    by Sean P Ng, Ross W Rounsevell, Annette Steward, Christian D Geierhaas, Philip M Williams, Emanuele Paci, Jane Clarke
    posted to force-probe-md implicit-solvent mechanical-unfolding single-molecule-techniques by choonpeng on 2007-02-03 03:06:19 as read
  • Mechanical unfolding of proteins: insights into biology, structure and folding
    Current Opinion in Structural Biology, Vol. 17, No. 1. (2007), pp. 58-66.
    by Julia R Forman, Jane Clarke
    posted to mechanical-unfolding review single-molecule-techniques by choonpeng on 2007-01-29 02:44:10 as read
  • Biophysical investigations of engineered polyproteins: implications for force data.
    Biophys J, Vol. 88, No. 3. (March 2005), pp. 2022-2029.
    by RW Rounsevell, A Steward, J Clarke
    posted to multi-domain protein-folding single-molecule-techniques by choonpeng on 2007-01-29 02:40:00 as ***
  • Unfolding the multi-length scale domain structure of silk fibroin protein
    Polymer, Vol. 47, No. 16. (26 July 2006), pp. 5821-5830.
    by Hennady Shulha, Cheryl, David L Kaplan, Vladimir V Tsukruk
    posted to multi-domain protein-mechanics single-molecule-techniques by choonpeng on 2006-10-03 09:50:19 as ***
  • Anisotropic deformation response of single protein molecules
    PNAS, Vol. 103, No. 34. (22 August 2006), pp. 12724-12728.
    by Hendrik Dietz, Felix Berkemeier, Morten Bertz, Matthias Rief
    posted to protein-mechanics single-molecule-techniques by choonpeng on 2006-08-26 09:24:24 as read
  • Single Molecule Force Spectroscopy Reveals a Weakly Populated Microstate of the FnIII Domains of Tenascin
    Journal of Molecular Biology, Vol. 361, No. 2. (11 August 2006), pp. 372-381.
    by Yi Cao, Hongbin Li
    posted to protein-folding single-molecule-techniques by choonpeng on 2006-07-31 02:12:55 as ***
  • Prediction of the translocation kinetics of a protein from its mechanical properties.
    Biophys J, Vol. 91, No. 5. (1 September 2006), pp. L51-L53.
    by Daniel K West, David J Brockwell, Emanuele Paci
    posted to protein-translocation single-molecule-techniques by choonpeng on 2006-07-20 11:59:09 as read
  • Comparison of the protein-unfolding pathways between mitochondrial protein import and atomic-force microscopy measurements.
    Proc Natl Acad Sci U S A, Vol. 102, No. 50. (13 December 2005), pp. 17999-18004.
    by T Sato, M Esaki, JM Fernandez, T Endo
    posted to protein-translocation single-molecule-techniques by choonpeng on 2006-07-20 00:41:30 as read along with 2 people hsekiguc ruudvanleeuwen
  • Stepwise unfolding of titin under force-clamp atomic force microscopy.
    Proc Natl Acad Sci U S A, Vol. 98, No. 2. (16 January 2001), pp. 468-472.
    by AF Oberhauser, PK Hansma, M Carrion-Vazquez, JM Fernandez
    posted to protein-mechanics single-molecule-techniques by choonpeng on 2006-07-13 05:24:14 as read
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