chrisamiller's library [66 articles]

Recent papers added to chrisamiller's library.

	Establishing a successful bioinformatics core facility team. [My Copy] PLoS computational biology, Vol. 5, No. 6. (26 June 2009), e1000368. by F. Lewitter, M. Rebhan posted to career bioinformatics academia by chrisamiller on 2009-06-30 17:03:39 as along with 9 people and 4 groups nuin operon aprasad dswan reyez djkt GeeSharpMinor barry ppgardne structural_bioinformatics McCammon Bioinformatics Journal picks
	The need for centralization of computational biology resources. [My Copy] PLoS computational biology, Vol. 5, No. 6. (26 June 2009), e1000372. by F. Lewitter, M. Rebhan, B. Richter, D. Sexton posted to career bioinformatics academia by chrisamiller on 2009-06-30 16:59:03 as along with 9 people and 1 group nuin VGreiff operon aprasad jmeppley dswan reyez kshameer dullhunk Bioinformatics
	Ten Simple Rules for Choosing between Industry and Academia [My Copy] PLoS Comput Biol, Vol. 5, No. 6. (26 June 2009), e1000388. by David B. Searls posted to meta industry career academia by chrisamiller on 2009-06-30 16:53:11 as along with 20 people and 2 groups dbikard jasontsai casutton franklu310 kieran101 rdiaz daveGerrard reyez neils marekrud Borelli psique kshameer gjuggler sdaehne flips ppgardne fgibson barry dullhunk Journal picks McCammon
	Seeing the Forest for the Trees: Using the Gene Ontology to re-structure Hierarchical clustering. [My Copy] Bioinformatics (Oxford, England) (3 June 2009) by Dikla Dotan-Cohen, Simon Kasif, Avraham A A. Melkman posted to go clustering cancer algorithm by chrisamiller on 2009-06-12 16:27:43 as along with 5 people brianb nuin jmeppley fgibson dullhunk
	The Sequence Alignment/Map (SAM) Format and SAMtools. [My Copy] Bioinformatics (Oxford, England) (8 June 2009), btp352. by Heng Li, Bob Handsaker, Alec Wysoker, et al.Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin, posted to utility snp sequence mapping genomic alignment by chrisamiller on 2009-06-12 16:25:21 as along with 9 people and 1 group jasontsai operon farhat AlexBateman nuin n00c natstreet sandfire druvus Journal picks
	Importing ArrayExpress datasets into R/Bioconductor. [My Copy] Bioinformatics (8 June 2009), btp354. by Audrey Kauffmann, Tim F. Rayner, Helen Parkinson, et al.Misha Kapushesky, Margus Lukk, Alvis Brazma, Wolfgang Huber posted to r microarray bioconductor arrayexpress by chrisamiller on 2009-06-12 16:23:44 as along with 4 people guhjy nuin neils phoenixzxl
	Visual and Statistical Comparison of Metagenomes. [My Copy] Bioinformatics (Oxford, England) (10 June 2009), btp341. by Suparna Mitra, Bernhard Klar, Daniel H. Huson posted to metagenomic bacteria archae algorithm by chrisamiller on 2009-06-12 16:22:43 as along with 8 people and 2 groups nuin stajich sriesenfeld idoerg guhjy jmeppley neils druvus Mycology iSEEM
	Comprehensive genomic characterization defines human glioblastoma genes and core pathways. [My Copy] Nature (4 September 2008) by , , Roger McLendon, et al.Allan Friedman, Darrell Bigner, , Erwin G G. Van Meir, Daniel J J. Brat, Gena Marie Mastrogianakis, Jeffrey J J. Olson, , Tom Mikkelsen, Norman Lehman, , Ken Aldape, W K K. Alfred Yung, Oliver Bogler, , Scott Vandenberg, Mitchel Berger, Michael Prados, , Donna Muzny, Margaret Morgan, Steve Scherer, Aniko Sabo, Lynn Nazareth, Lora Lewis, Otis Hall, Yiming Zhu, Yanru Ren, Omar Alvi, Jiqiang Yao, Alicia Hawes, Shalini Jhangiani, Gerald Fowler, Anthony San Lucas, Christie Kovar, Andrew Cree, Huyen Dinh, Jireh Santibanez, Vandita Joshi, Manuel L L. Gonzalez-Garay, Christopher A A. Miller, Aleksandar Milosavljevic, Larry Donehower, David A A. Wheeler, Richard A A. Gibbs, , Kristian Cibulskis, Carrie Sougnez, Tim Fennell, Scott Mahan, Jane Wilkinson, Liuda Ziaugra, Robert Onofrio, Toby Bloom, Rob Nicol, Kristin Ardlie, Jennifer Baldwin, Stacey Gabriel, Eric S S. Lander, , Li Ding, Robert S S. Fulton, Michael D D. McLellan, John Wallis, David E E. Larson, Xiaoqi Shi, Rachel Abbott, Lucinda Fulton, Ken Chen, Daniel C C. Koboldt, Michael C C. Wendl, Rick Meyer, Yuzhu Tang, Ling Lin, John R R. Osborne, Brian H H. Dunford-Shore, Tracie L L. Miner, Kim Delehaunty, Chris Markovic, Gary Swift, William Courtney, Craig Pohl, Scott Abbott, Amy Hawkins, Shin Leong, Carrie Haipek, Heather Schmidt, Maddy Wiechert, Tammi Vickery, Sacha Scott, David J J. Dooling, Asif Chinwalla, George M M. Weinstock, Elaine R R. Mardis, Richard K K. Wilson, , Gad Getz, Wendy Winckler, Roel G W G. Verhaak, Michael S S. Lawrence, Michael O'Kelly, Jim Robinson, Gabriele Alexe, Rameen Beroukhim, Scott Carter, Derek Chiang, Josh Gould, Supriya Gupta, Josh Korn, Craig Mermel, Jill Mesirov, Stefano Monti, Huy Nguyen, Melissa Parkin, Michael Reich, Nicolas Stransky, Barbara A A. Weir, Levi Garraway, Todd Golub, Matthew Meyerson, , Lynda Chin, Alexei Protopopov, Jianhua Zhang, Ilana Perna, Sandy Aronson, Narayan Sathiamoorthy, Georgia Ren, Jun Yao, W Ruprecht R. Wiedemeyer, Hyunsoo Kim, Sek Won Kong, Yonghong Xiao, Isaac S S. Kohane, Jon Seidman, Peter J J. Park, Raju Kucherlapati, , Peter W W. Laird, Leslie Cope, James G G. Herman, Daniel J J. Weisenberger, Fei Pan, David Van Den Berg, Leander Van Neste, Joo Mi Yi, Kornel E E. Schuebel, Stephen B B. Baylin, , Devin M M. Absher, Jun Z Z. Li, Audrey Southwick, Shannon Brady, Amita Aggarwal, Tisha Chung, Gavin Sherlock, James D D. Brooks, Richard M M. Myers, , Paul T T. Spellman, Elizabeth Purdom, Lakshmi R R. Jakkula, Anna V V. Lapuk, Henry Marr, Shannon Dorton, Yoon Gi Choi, Ju Han, Amrita Ray, Victoria Wang, Steffen Durinck, Mark Robinson, Nicholas J J. Wang, Karen Vranizan, Vivian Peng, Eric Van Name, Gerald V V. Fontenay, John Ngai, John G G. Conboy, Bahram Parvin, Heidi S S. Feiler, Terence P P. Speed, Joe W W. Gray, , Cameron Brennan, Nicholas D D. Socci, Adam Olshen, Barry S S. Taylor, Alex Lash, Nikolaus Schultz, Boris Reva, Yevgeniy Antipin, Alexey Stukalov, Benjamin Gross, Ethan Cerami, Wei Qing Wang, Li-Xuan X. Qin, Venkatraman E E. Seshan, Liliana Villafania, Magali Cavatore, Laetitia Borsu, Agnes Viale, William Gerald, Chris Sander, Marc Ladanyi, , Charles M M. Perou, D Neil Hayes, Michael D D. Topal, Katherine A A. Hoadley, Yuan Qi, Sai Balu, Yan Shi, Junyuan Wu, , Robert Penny, Michael Bittner, Troy Shelton, Elizabeth Lenkiewicz, Scott Morris, Debbie Beasley, Sheri Sanders, , Ari Kahn, Robert Sfeir, Jessica Chen, David Nassau, Larry Feng, Erin Hickey, Jinghui Zhang, John N N. Weinstein, , Anna Barker, Daniela S S. Gerhard, Joseph Vockley, Carolyn Compton, Jim Vaught, Peter Fielding, Martin L L. Ferguson, Carl Schaefer, Subhashree Madhavan, Kenneth H H. Buetow, , Francis Collins, Peter Good, Mark Guyer, Brad Ozenberger, Jane Peterson, Elizabeth Thomson posted to tcga sequencing integration gbm expression cancer acgh by chrisamiller on 2009-06-05 01:18:37 as along with 17 people and 2 groups fenghezi jessopher jfr zufar wimufi jbhiatt frohike huiminC renatomilani ptrobajo cchand Zephyrus nuin brianb oelemento shikin shigepong Roswell Cancer Crosstalk GeneGo
	A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome. [My Copy] Genome research (9 December 2008) by Oliver A. Hampton, Petra Den Hollander, Christopher A. Miller, et al.David A. Delgado, Jian Li, Cristian Coarfa, Ronald A. Harris, Stephen Richards, Steven E. Scherer, Donna M. Muzny, Richard A. Gibbs, Adrian V. Lee, Aleksandar Milosavljevic posted to sequencing celllines cancer breast breakpoints by chrisamiller on 2009-06-05 01:16:34 as along with 5 people and 2 groups myzhang jiezhou renatomilani songpku Zephyrus Roswell Cancer Crosstalk Breast Cancer Reading Club
	rtracklayer: an R package for interfacing with genome browsers [My Copy] Bioinformatics, Vol. 25, No. 14. (15 July 2009), pp. 1841-1842. by Michael Lawrence, Robert Gentleman, Vincent Carey posted to r interface genomics browser bioinformatics by chrisamiller on 2009-05-27 00:09:42 as along with 10 people and 1 group shikin inesdesantiago daforerog ppgardne natstreet nuin brianb kshameer neils druvus Journal picks
	An Active Registry for Bioinformatics Web Services [My Copy] Bioinformatics (21 May 2009), btp329. by S. Pettifer, D. Thorne, P. Mcdermott, et al.T. Attwood, J. Baran, J. C. Bryne, T. Hupponen, D. Mowbray, G. Vriend posted to tools online list database bioinformatics algorithm by chrisamiller on 2009-05-26 18:36:43 as along with 8 people druvus guhjy flipip23 nuin dbk kshameer dullhunk neils
	Differential splicing using whole-transcript microarrays [My Copy] BMC Bioinformatics, Vol. 10 (22 May 2009), 156. by Mark Robinson, Terence Speed posted to splicing r package microarray fusion expression by chrisamiller on 2009-05-26 18:29:48 as along with 4 people and 1 group dswan lwaldron humburg neils Bioinformatics
	A Differential Wiring Analysis of Expression Data Correctly Identifies the Gene Containing the Causal Mutation [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (1 May 2009), e1000382. by Nicholas J. Hudson, Antonio Reverter, Brian P. Dalrymple posted to network mutations expression by chrisamiller on 2009-05-05 22:46:41 as along with 8 people tmmurali Borelli giovanni cabbagesofdoom roys dswan ptrobajo dolchan
	GS2: An efficiently computable measure of GO-based similarity of gene sets [My Copy] Bioinformatics (16 March 2009), btp128. by Troy Ruths, Derek Ruths, Luay Nakhleh posted to network go geneset algorithm by chrisamiller on 2009-04-07 17:17:23 as along with 3 people guhjy sgoetz nuin
	The UCSC Cancer Genomics Browser [My Copy] Nature Methods, Vol. 6, No. 4., pp. 239-240. by Jingchun Zhu, Zachary J. Sanborn, Stephen Benz, et al.Christopher Szeto, Fan Hsu, Robert M. Kuhn, Donna Karolchik, John Archie, Marc E. Lenburg, Laura J. Esserman, James W. Kent, David Haussler, Ting Wang posted to visualization genomic cancer browser by chrisamiller on 2009-04-07 05:03:09 as along with 2 people guhjy neils
	KEGGgraph: a graph approach to KEGG PATHWAY in R and bioconductor [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1470-1471. by Jitao D. Zhang, Stefan Wiemann posted to r pathway network kegg bioconductor by chrisamiller on 2009-04-07 04:36:14 as along with 12 people kiara coela guhjy dolchan neils VGreiff nuin renatomilani jmeppley natstreet phoenixzxl druvus
	BioconductorBuntu - A Linux Distribution that Implements a Web-Based DNA Microarray Analysis Server [My Copy] Bioinformatics (23 March 2009), btp165. by Paul Geeleher, Dermot Morris, John P. Hinde, Aaron Golden posted to r platform linux bioconductor by chrisamiller on 2009-04-07 04:23:08 as along with 7 people and 1 group guhjy dswan djkt renatomilani phoenixzxl natstreet druvus Bioinformatics
	Better Bioinformatics Through Usability Analysis. [My Copy] Bioinformatics (Oxford, England) (9 December 2008) by Davide Bolchini, Anthony Finkelstein, Vito Perrone, Sylvia Nagl posted to usability software design bioinformatics applications by chrisamiller on 2009-02-03 19:22:39 as along with 19 people and 1 group guhjy svozil pkonings dbk rmhirsk niallhaslam renatomilani Yanno fgibson zimbo1 druvus allysonlister dswan behindtherabbit neils dullhunk sjcockell nuin jmeppley Bioinformatics
	Over half of breakpoints in gene pairs involved in cancer-specific recurrent translocations are mapped to human chromosomal fragile sites [My Copy] BMC Genomics, Vol. 10 (30 January 2009), 59. by Allison, Yuh-Hwa Wang posted to instability genomic fusion cancer breakpoints by chrisamiller on 2009-02-03 19:21:59 as
	High-Performance Gene Name Normalization with GENO [My Copy] Bioinformatics by Joachim Wermter, Katrin Tomanek, Udo Hahn posted to no-tag by chrisamiller on 2009-02-03 19:07:31 as
	The Hallmarks of Cancer [My Copy] Cell, Vol. 100, No. 1. (7 January 2000), pp. 57-70. by Douglas Hanahan, Robert A. Weinberg posted to cancer by chrisamiller on 2009-01-03 17:37:46 as along with 13 people and 2 groups emiko eoinhyde tstricker reyez xingxu catcremona windman83 xico samoday ealloza jvonmoltke blackm0k srp33 WetBiology BioinfoCIPF
	Why Do Hubs in the Yeast Protein Interaction Network Tend To Be Essential: Reexamining the Connection between the Network Topology and Essentiality. [My Copy] PLoS computational biology, Vol. 4, No. 8. (August 2008) by E. Zotenko, J. Mestre, D. P. O'Leary, T. M. Przytycka posted to networks by chrisamiller on 2008-12-20 20:39:15 as along with 11 people and 1 group marti kaarsinogen jfr aramata jmjimenez srp33 maralena cabbagesofdoom shikin cerca tmmurali GeneGo
	Integrative genome-wide analysis reveals a robust genomic glioblastoma signature associated with copy number driving changes in gene expression [My Copy] Genes, Chromosomes and Cancer, Vol. 48, No. 1. (2009), pp. 55-68. by Marie de Tayrac, Amandine Etcheverry, Marc Aubry, et al.Stephan Saïkali, Abderrahmane Hamlat, Veronique Quillien, André Le Treut, Marie-Dominique Galibert, Jean Mosser posted to gbm copynumber acgh by chrisamiller on 2008-12-15 05:43:59 as along with 5 people and 1 group oelemento jfr Zephyrus rdiaz srp33 Roswell Cancer Crosstalk
	Genome-Wide Functional Synergy between Amplified and Mutated Genes in Human Breast Cancer [My Copy] Cancer Res, Vol. 68, No. 22. (15 November 2008), pp. 9532-9540. by Yuri Nikolsky, Evgeny Sviridov, Jun Yao, et al.Damir Dosymbekov, Vadim Ustyansky, Valery Kaznacheev, Zoltan Dezso, Laura Mulvey, Laura E. Macconaill, Wendy Winckler, Tatiana Serebryiskaya, Tatiana Nikolskaya, Kornelia Polyak posted to snp networks mutations gaps breast acgh by chrisamiller on 2008-12-10 18:14:56 as along with 3 people and 1 group jfr ipark-kaist Zephyrus Breast Cancer Reading Club
	Adjustment of systematic microarray data biases [My Copy] Bioinformatics, Vol. 20, No. 1. (1 January 2004), pp. 105-114. by Monica Benito, Joel Parker, Quan Du, et al.Junyuan Wu, Dong Xiang, Charles M. Perou, J. S. Marron posted to dwd by chrisamiller on 2008-10-24 21:56:20 as
	Selection of long oligonucleotides for gene expression microarrays using weighted rank-sum strategy [My Copy] BMC Bioinformatics, Vol. 8 (19 September 2007), 350. by Guangan Hu, Manuel Llinas, Jingguang Li, Peter R. Preiser, Zbynek Bozdech posted to no-tag by chrisamiller on 2008-10-24 21:47:02 as along with 2 people stsaft GeeSharpMinor
	Seeding and Propagation of Untransformed Mouse Mammary Cells in the Lung [My Copy] Science (28 August 2008), 1161621. by Katrina Podsypanina, Yi-Chieh N. Du, Martin Jechlinger, Levi J. Beverly, Dolores Hambardzumyan, Harold Varmus posted to metastasis cancer by chrisamiller on 2008-09-26 02:29:19 as along with 5 people and 3 groups jessopher myzhang ajaymalik songpku Zephyrus Breast Cancer Reading Club Breast cancer Roswell Cancer Crosstalk
	A multidimensional analysis of genes mutated in breast and colorectal cancers [My Copy] Genome Res. (10 August 2007), gr.6431107. by Jimmy Lin, Christine M. Gan, Xiaosong Zhang, et al.Sian Jones, Tobias Sjoblom, Laura D. Wood, Williams D. Parsons, Nickolas Papadopoulos, Kenneth W. Kinzler, Bert Vogelstein, Giovanni Parmigiani, Victor E. Velculescu posted to networks mutations expression cancer by chrisamiller on 2008-09-25 04:45:07 as along with 3 people jfr cerami xingxu
	From the Cover: Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles [My Copy] PNAS, Vol. 102, No. 43. (25 October 2005), pp. 15545-15550. by Aravind Subramanian, Pablo Tamayo, Vamsi K. Mootha, et al.Sayan Mukherjee, Benjamin L. Ebert, Michael A. Gillette, Amanda Paulovich, Scott L. Pomeroy, Todd R. Golub, Eric S. Lander, Jill P. Mesirov posted to networks expression algorithm by chrisamiller on 2008-09-25 04:37:30 as along with 33 people and 4 groups tmmurali VGreiff daforerog paszkows ipark-kaist bertelsen ajbattle jessopher askrajiv idonaldson ihpark dragonrez jfr balajis maryee xwbcn hpiwowar aviad_work ealloza jdiggans jeremymiller frohike hawkeyehammer schuylrp natstreet heliopais shikin waghsk roys ellakat srp33 sgoetz AbnerCYH Bioinformatics BioinfoCIPF GeschwindLab Indigene
	Resolving Individuals Contributing Trace Amounts of DNA to Highly Complex Mixtures Using High-Density SNP Genotyping Microarrays [My Copy] PLoS Genet, Vol. 4, No. 8. (2008), e1000167. by Nils Homer, Szabolcs Szelinger, Margot Redman, et al.David Duggan, Waibhav Tembe, Jill Muehling, John V. Pearson, Dietrich A. Stephan, Stanley F. Nelson, David W. Craig posted to snp privacy hapmap by chrisamiller on 2008-09-25 04:28:57 as along with 9 people jsatkosk dnewburger xingxu dfabbri sometwo jasonbobe djkt rs fpattyn
	A module map showing conditional activity of expression modules in cancer. [My Copy] Nature Genetics, Vol. 36, No. 10. (October 2004), pp. 1090-1098. by E. Segal, N. Friedman, D. Koller, A. Regev posted to no-tag by chrisamiller on 2008-09-25 04:08:57 as
	Marked Genomic Differences Characterize Primary and Secondary Glioblastoma Subtypes and Identify Two Distinct Molecular and Clinical Secondary Glioblastoma Entities [My Copy] Cancer Res, Vol. 66, No. 23. (1 December 2006), pp. 11502-11513. by Elizabeth A. Maher, Cameron Brennan, Patrick Y. Wen, et al.Laura Durso, Keith L. Ligon, Aaron Richardson, Deepak Khatry, Bin Feng, Raktim Sinha, David N. Louis, John Quackenbush, Peter M. Black, Lynda Chin, Ronald A. Depinho posted to subtypes gbm cancer acgh by chrisamiller on 2008-09-25 04:01:45 as along with 1 person caseybrown
	Gene expression profiling reveals molecularly and clinically distinct subtypes of glioblastoma multiforme [My Copy] Proceedings of the National Academy of Sciences, Vol. 102, No. 16. (19 April 2005), pp. 5814-5819. by Yu Liang, Maximilian Diehn, Nathan Watson, et al.Andrew W. Bollen, Ken D. Aldape, Kelly M. Nicholas, Kathleen R. Lamborn, Mitchel S. Berger, David Botstein, Patrick O. Brown, Mark A. Israel posted to subtypes gbm expression cancer by chrisamiller on 2008-09-25 03:54:54 as along with 1 person srp33
	PTEN-deficient cancers depend on PIK3CB [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 35. (2008), pp. 13057-13062. by Susan Wee, Dmitri Wiederschain, Sauveur-Michel Maira, et al.Alice Loo, Christine Miller, Rosalie Debeaumont, Frank Stegmeier, Yung-Mae Yao, Christoph Lengauer posted to colorectal cancer by chrisamiller on 2008-09-25 03:53:33 as along with 1 person guhjy
	What are decision trees? [My Copy] Nature Biotechnology, Vol. 26, No. 9., pp. 1011-1013. by Carl Kingsford, Steven L. Salzberg posted to review algorithm by chrisamiller on 2008-09-25 03:44:53 as along with 16 people and 2 groups daforerog svozil Yanno A_Olympia jfr yzlab ptrobajo markusd druvus Zephyrus brianb dullhunk sjcockell zwang GeeSharpMinor neils logics of knowledge Roswell Cancer Crosstalk
	Integrated array-comparative genomic hybridization and expression array profiles identify clinically relevant molecular subtypes of glioblastoma. [My Copy] Cancer Res, Vol. 65, No. 5. (1 March 2005), pp. 1678-1686. by J. M. Nigro, A. Misra, L. Zhang, et al.I. Smirnov, H. Colman, C. Griffin, N. Ozburn, M. Chen, E. Pan, D. Koul, W. K. Yung, B. G. Feuerstein, K. D. Aldape posted to gbm expression clustering cancer acgh by chrisamiller on 2008-09-25 03:43:57 as along with 3 people srp33 jfr bioguru2000
	R/parallel - speeding up bioinformatics analysis with R [My Copy] BMC Bioinformatics, Vol. 9 (22 September 2008), 390. by Gonzalo Vera, Ritsert C. Jansen, Remo L. Suppi posted to r optimization library by chrisamiller on 2008-09-25 00:07:43 as along with 21 people and 1 group dposada jfr Yanno siebert operon talponer guhjy dakelley chad_davis ptrobajo pengchy shikin robertlischke cisevol druvus renatomilani rdiaz nuin GeeSharpMinor neils jandot BergmanLab
	A Population Proportion approach for ranking differentially expressed genes [My Copy] BMC Bioinformatics, Vol. 9 (18 September 2008), 380. by Mugdha Gadgil posted to expression algorithm by chrisamiller on 2008-09-25 00:05:41 as along with 1 person guhjy
	Comprehensive analysis of affymetrix exon arrays using BioConductor. [My Copy] PLoS computational biology, Vol. 4, No. 2. (February 2008) by M. J. Okoniewski, C. J. Miller posted to r expression bioconductor by chrisamiller on 2008-09-10 03:28:36 as along with 7 people daveGerrard floatingpoint guhjy neils giovenko jfr eskay
	GO PaD: the Gene Ontology Partition Database. [My Copy] Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007) by G. Alterovitz, M. Xiang, M. Mohan, M. F. Ramoni posted to go networks by chrisamiller on 2008-08-30 00:53:09 as along with 3 people hollandorange jfr macavity1g
	Validation of rice genome sequence by optical mapping [My Copy] BMC Genomics, Vol. 8 (15 August 2007), 278. by Shiguo Zhou, Michael C. Bechner, Mike Place, et al.Chris P. Churas, Louise Pape, Sally A. Leong, Rod Runnheim, Dan K. Forrest, Steve Goldstein, Miron Livny, David C. Schwartz posted to assembly genomics opticalmapping by chrisamiller on 2008-07-11 18:25:30 as
	Shotgun Optical Maps of the Whole Escherichia coli O157:H7 Genome [My Copy] Genome Res., Vol. 11, No. 9. (1 September 2001), pp. 1584-1593. by Alex Lim, Eileen T. Dimalanta, Konstantinos D. Potamousis, et al.Galex Yen, Jennifer Apodoca, Chunhong Tao, Jieyi Lin, Rong Qi, John Skiadas, Arvind Ramanathan, Nicole T. Perna, Guy Plunkett, Valerie Burland, Bob Mau, Jeremiah Hackett, Frederick R. Blattner, Thomas S. Anantharaman, Bhubaneswar Mishra, David C. Schwartz posted to assembly gaps genomics opticalmapping by chrisamiller on 2008-07-11 18:24:05 as
	The Consensus Coding Sequences of Human Breast and Colorectal Cancers [My Copy] Science (7 September 2006), 1133427. by Tobias Sjoblom, Sian Jones, Laura D. Wood, et al.Williams D. Parsons, Jimmy Lin, Thomas Barber, Diana Mandelker, Rebecca J. Leary, Janine Ptak, Natalie Silliman, Steve Szabo, Phillip Buckhaults, Christopher Farrell, Paul Meeh, Sanford D. Markowitz, Joseph Willis, Dawn Dawson, James K. Willson, Adi F. Gazdar, James Hartigan, Leo Wu, Changsheng Liu, Giovanni Parmigiani, Ben H. Park, Kurtis E. Bachman, Nickolas Papadopoulos, Bert Vogelstein, Kenneth W. Kinzler, Victor E. Velculescu posted to breast cancer mutations sequencing tumors by chrisamiller on 2008-06-26 23:29:45 as along with 21 people and 1 group alessandrobrozzi wimufi aalibes bicko jfr tuck balajis nickluscombe rdiaz eisei jackjackjjj vicsta jtaylor emb51 ramensky massivemayhem cerami xingxu mingzhi frohike gwenknight EBI-regulation
	High-resolution genomic and expression analyses of copy number alterations in breast tumors [My Copy] Genes, Chromosomes and Cancer, Vol. 47, No. 6. (2008), pp. 530-542. by Peter M. Haverty, Jane Fridlyand, Li Li, et al.Gad Getz, Rameen Beroukhim, Scott Lohr, Thomas D. Wu, Guy Cavet, Zemin Zhang, John Chant posted to acgh algorithm breast cancer expression tumors by chrisamiller on 2008-06-26 22:48:43 as along with 2 people frohike rdiaz
	PADGE: analysis of heterogeneous patterns of differential gene expression. [My Copy] Physiol Genomics (9 October 2007) by Li Li, Amitabha Chaudhuri, John Chant, Zhijun Tang posted to algorithm expression by chrisamiller on 2008-06-26 22:46:22 as along with 1 person guhjy
	Microarray data mining: A novel optimization-based approach to uncover biologically coherent structures [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Meng Tan, Erin Smith, James Broach, Christodoulos Floudas posted to algorithm clustering expression go networks by chrisamiller on 2008-06-26 22:43:55 as along with 5 people carlk cswinburne jfr GeeSharpMinor guhjy
	Mapping and sequencing of structural variation from eight human genomes [My Copy] Nature, Vol. 453, No. 7191. (1 May 2008), pp. 56-64. by Jeffrey M. Kidd, Gregory M. Cooper, William F. Donahue, et al.Hillary S. Hayden, Nick Sampas, Tina Graves, Nancy Hansen, Brian Teague, Can Alkan, Francesca Antonacci, Eric Haugen, Troy Zerr, N. Alice Yamada, Peter Tsang, Tera L. Newman, Eray Tuzun, Ze Cheng, Heather M. Ebling, Nadeem Tusneem, Robert David, Will Gillett, Karen A. Phelps, Molly Weaver, David Saranga, Adrianne Brand, Wei Tao, Erik Gustafson, Kevin Mckernan, Lin Chen, Maika Malig, Joshua D. Smith, Joshua M. Korn, Steven A. Mccarroll, David A. Altshuler, Daniel A. Peiffer, Michael Dorschner, John Stamatoyannopoulos, David Schwartz, Deborah A. Nickerson, James C. Mullikin, Richard K. Wilson, Laurakay Bruhn, Maynard V. Olson, Rajinder Kaul, Douglas R. Smith, Evan E. Eichler posted to esp genomics structural variation by chrisamiller on 2008-06-26 22:35:10 as along with 27 people and 2 groups dakelley xingxu alweber APRegier Annab smiddha daforerog vkwn frohike waszak matthewsuderman jfr hpaces Ema bpb dchughes djkt balicea shikin psique kintoki kaniko aprasad vplagnol maximilianh guhjy skoch3 GeneGo Koch_Lab
	Biclustering algorithms for biological data analysis: a survey [My Copy] IEEE/ACM Transactions on Computational Biology and Bioinformatics In IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 1, No. 1. (2004), pp. 24-45. by S. C. Madeira, A. L. Oliveira posted to algorithm biclusters clustering expression by chrisamiller on 2008-06-26 22:33:37 as along with 11 people zufar ilyashl saman_vp ihpark tvdbulck librain dps bozdagd ealloza carlk tmmurali
	Novel patterns of genome rearrangement and their association with survival in breast cancer. [My Copy] Genome Res, Vol. 16, No. 12. (December 2006), pp. 1465-1479. by J. Hicks, A. Krasnitz, B. Lakshmi, et al.N. E. Navin, M. Riggs, E. Leibu, D. Esposito, J. Alexander, J. Troge, V. Grubor, S. Yoon, M. Wigler, K. Ye, A. L. Børresen-Dale, B. Naume, E. Schlicting, L. Norton, T. Hägerström, L. Skoog, G. Auer, S. Månér, P. Lundin, A. Zetterberg posted to acgh breast cancer firestorm by chrisamiller on 2008-06-26 22:30:49 as along with 2 people jfr cerami
	Breast tumor copy number aberration phenotypes and genomic instability. [My Copy] BMC Cancer, Vol. 6 (2006) by J. Fridlyand, A. M. Snijders, B. Ylstra, et al.H. Li, A. Olshen, R. Segraves, S. Dairkee, T. Tokuyasu, B. M. Ljung, A. N. Jain, J. McLennan, J. Ziegler, K. Chin, S. Devries, H. Feiler, J. W. Gray, F. Waldman, D. Pinkel, D. G. Albertson posted to acgh breast cancer by chrisamiller on 2008-06-26 21:58:32 as along with 4 people jfr rdiaz Garamonfok frohike

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