rtracklayer: an R package for interfacing with genome browsers. Export

@article{citeulike:4634486, abstract = {SUMMARY: The rtracklayer package supports the integration of existing genome browsers with experimental data analyses performed in R. The user may (i) transfer annotation tracks to and from a genome browser and (ii) create and manipulate browser views to focus on a particular set of annotations in a specific genomic region. Currently, the UCSC genome browser is supported. AVAILABILITY: The package is freely available from http://www.bioconductor.org/. A quick-start vignette is included with the package.}, author = {Lawrence, Michael and Gentleman, Robert and Carey, Vincent}, citeulike-article-id = {4634486}, citeulike-linkout-0 = {http://dx.doi.org/10.1093/bioinformatics/btp328}, citeulike-linkout-1 = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/25/14/1841}, citeulike-linkout-2 = {http://view.ncbi.nlm.nih.gov/pubmed/19468054}, citeulike-linkout-3 = {http://www.hubmed.org/display.cgi?uids=19468054}, day = {15}, doi = {10.1093/bioinformatics/btp328}, issn = {1367-4811}, journal = {Bioinformatics (Oxford, England)}, keywords = {bioinformatics, browser, genomics, interface, r}, month = {July}, number = {14}, pages = {1841--1842}, posted-at = {2009-05-27 00:09:42}, priority = {2}, title = {rtracklayer: an R package for interfacing with genome browsers.}, url = {http://dx.doi.org/10.1093/bioinformatics/btp328}, volume = {25}, year = {2009} }

TY - JOUR ID - citeulike:4634486 L3 - citeulike-article-id:4634486 N2 - SUMMARY: The rtracklayer package supports the integration of existing genome browsers with experimental data analyses performed in R. The user may (i) transfer annotation tracks to and from a genome browser and (ii) create and manipulate browser views to focus on a particular set of annotations in a specific genomic region. Currently, the UCSC genome browser is supported. AVAILABILITY: The package is freely available from http://www.bioconductor.org/. A quick-start vignette is included with the package. IS - 14 JF - Bioinformatics (Oxford, England) SN - 1367-4811 EP - 1842 TI - rtracklayer: an R package for interfacing with genome browsers. VL - 25 SP - 1841 KW - bioinformatics KW - browser KW - genomics KW - interface KW - r AU - Lawrence, Michael AU - Gentleman, Robert AU - Carey, Vincent PY - 2009/07/15/ UR - http://dx.doi.org/10.1093/bioinformatics/btp328 ER -