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Importing ArrayExpress datasets into R/Bioconductor. Export

Bioinformatics (Oxford, England), Vol. 25, No. 16. (15 August 2009), pp. 2092-2094.

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arrayexpress bioconductor microarray r

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SUMMARY: ArrayExpress is one of the largest public repositories of microarray datasets. R/Bioconductor provides a comprehensive suite of microarray analysis and integrative bioinformatics software. However, easy ways for importing datasets from ArrayExpress into R/Bioconductor have been lacking. Here, we present such a tool that is suitable for both interactive and automated use. AVAILABILITY: The ArrayExpress package is available from the Bioconductor project at http://www.bioconductor.org. A users guide and examples are provided with the package.


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