chrisamiller's algorithm [18 articles] Export

Recent papers added to chrisamiller's library classified by the tag algorithm. You can also see everyone's algorithm.

	Discovering simple DNA sequences by the algorithmic significance method [My Copy] Comput. Appl. Biosci., Vol. 9, No. 4. (1 August 1993), pp. 407-411. by Aleksandar Milosavljevic, Jerzy Jurka posted to significance informationtheory bioninformatics algorithm by chrisamiller on 2009-10-16 06:09:34 as
	Functional copy-number alterations in cancer. [My Copy] PloS one, Vol. 3, No. 9. (11 September 2008), e3179. by Barry S. Taylor, Jordi Barretina, Nicholas D. Socci, et al.Penelope Decarolis, Marc Ladanyi, Matthew Meyerson, Samuel Singer, Chris Sander posted to rae copynumber cancer algorithm acgh by chrisamiller on 2009-08-17 17:57:29 as along with 5 people and 1 group daed jfr huiminC oelemento Zephyrus Roswell Cancer Crosstalk
	Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes [My Copy] Genome Research, Vol. 19, No. 7. (15 July 2009), pp. 1270-1278. by Fereydoun Hormozdiari, Can Alkan, Evan E. Eichler, S. Cenk Sahinalp posted to algorithm esp paired-end sequencing structural by chrisamiller on 2009-07-14 21:58:04 as along with 16 people n00c rdiaz aezrin jandot GustavoLacerda guhjy jessopher megraw jonilaserson dandaman sameersoi djkt dakelley APRegier natstreet druvus
	Seeing the Forest for the Trees: Using the Gene Ontology to re-structure Hierarchical clustering. [My Copy] Bioinformatics (Oxford, England) (3 June 2009) by Dikla Dotan-Cohen, Simon Kasif, Avraham A A. Melkman posted to algorithm cancer clustering go by chrisamiller on 2009-06-12 16:27:43 as along with 5 people brianb nuin jmeppley fgibson dullhunk
	Visual and statistical comparison of metagenomes [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1849-1855. by Suparna Mitra, Bernhard Klar, Daniel H. Huson posted to algorithm archae bacteria metagenomic by chrisamiller on 2009-06-12 16:22:43 as along with 13 people and 3 groups carlk polivares inesdesantiago taylor73 ollieredfernwork nuin stajich sriesenfeld idoerg guhjy jmeppley neils druvus Orengo Group Journal Picks Mycology iSEEM
	An active registry for bioinformatics web services. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 16. (15 August 2009), pp. 2090-2091. by S. Pettifer, D. Thorne, P. McDermott, et al.T. Attwood, J. Baran, J. C. Bryne, T. Hupponen, D. Mowbray, G. Vriend posted to algorithm bioinformatics database list online tools by chrisamiller on 2009-05-26 18:36:43 as along with 13 people and 2 groups joachimbaran pkonings dswan niallhaslam n00c druvus guhjy flipip23 nuin dbk kshameer dullhunk neils Bioinformatics Journal picks
	GS2: an efficiently computable measure of GO-based similarity of gene sets. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 9. (1 May 2009), pp. 1178-1184. by T. Ruths, D. Ruths, L. Nakhleh posted to algorithm geneset go network by chrisamiller on 2009-04-07 17:17:23 as along with 4 people MarcoAlvarez guhjy sgoetz nuin
	Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 43. (25 October 2005), pp. 15545-15550. by Aravind Subramanian, Pablo Tamayo, Vamsi K. Mootha, et al.Sayan Mukherjee, Benjamin L. Ebert, Michael A. Gillette, Amanda Paulovich, Scott L. Pomeroy, Todd R. Golub, Eric S. Lander, Jill P. Mesirov posted to algorithm expression networks by chrisamiller on 2008-09-25 04:37:30 as along with 45 people and 4 groups gbloeb miskar giovenko greg dolchan pattersonee mhamidi jperkins zufar ptrobajo antonkratz yaredo tmmurali VGreiff daforerog paszkows ipark-kaist bertelsen ajbattle jessopher askrajiv idonaldson ihpark dragonrez jfr balajis maryee xwbcn hpiwowar aviad_work ealloza jdiggans jeremymiller frohike hawkeyehammer schuylrp natstreet heliopais shikin waghsk roys ellakat srp33 sgoetz AbnerCYH Bioinformatics BioinfoCIPF GeschwindLab Indigene
	What are decision trees? [My Copy] Nature biotechnology, Vol. 26, No. 9. (September 2008), pp. 1011-1013. by Carl Kingsford, Steven L. Salzberg posted to algorithm review by chrisamiller on 2008-09-25 03:44:53 as along with 19 people and 2 groups guhjy megraw jwhitney daforerog svozil Yanno A_Olympia jfr yzlab ptrobajo markusd druvus Zephyrus brianb dullhunk sjcockell zwang GeeSharpMinor neils logics of knowledge Roswell Cancer Crosstalk
	A Population Proportion approach for ranking differentially expressed genes [My Copy] BMC Bioinformatics, Vol. 9 (18 September 2008), 380. by Mugdha Gadgil posted to algorithm expression by chrisamiller on 2008-09-25 00:05:41 as along with 1 person guhjy
	High-resolution genomic and expression analyses of copy number alterations in breast tumors [My Copy] Genes, Chromosomes and Cancer, Vol. 47, No. 6. (2008), pp. 530-542. by Peter M. Haverty, Jane Fridlyand, Li Li, et al.Gad Getz, Rameen Beroukhim, Scott Lohr, Thomas D. Wu, Guy Cavet, Zemin Zhang, John Chant posted to acgh algorithm breast cancer expression tumors by chrisamiller on 2008-06-26 22:48:43 as along with 2 people frohike rdiaz
	PADGE: analysis of heterogeneous patterns of differential gene expression. [My Copy] Physiological genomics, Vol. 32, No. 1. (19 December 2007), pp. 154-159. by Li Li, Amitabha Chaudhuri, John Chant, Zhijun Tang posted to algorithm expression by chrisamiller on 2008-06-26 22:46:22 as along with 2 people jfr guhjy
	Microarray data mining: A novel optimization-based approach to uncover biologically coherent structures [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Meng Tan, Erin Smith, James Broach, Christodoulos Floudas posted to algorithm clustering expression go networks by chrisamiller on 2008-06-26 22:43:55 as along with 5 people carlk cswinburne jfr GeeSharpMinor guhjy
	Biclustering algorithms for biological data analysis: a survey. [My Copy] IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM In IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 1, No. 1. (r 2004), pp. 24-45. by Sara C. Madeira, Arlindo L. Oliveira posted to algorithm biclusters clustering expression by chrisamiller on 2008-06-26 22:33:37 as along with 14 people marti socwangnan jurgenjanes zufar ilyashl saman_vp ihpark tvdbulck librain dps bozdagd ealloza carlk tmmurali
	Network-Based Analysis of Affected Biological Processes in Type 2 Diabetes Models [My Copy] PLoS Genet, Vol. 3, No. 6. (15 June 2007), e96. by Manway Liu, Arthur Liberzon, Sek W. Kong, et al.Weil R. Lai, Peter J. Park, Isaac S. Kohane, Simon Kasif posted to algorithm expression networks by chrisamiller on 2008-06-26 21:50:59 as along with 6 people ptrobajo roys tmmurali zwang ajgentles cabbagezs
	Network modeling links breast cancer susceptibility and centrosome dysfunction [My Copy] Nature Genetics, Vol. 39, No. 11. (07 October 2007), pp. 1338-1349. by Miguel A. Pujana, Jing-Dong J. Han, Lea M. Starita, et al.Kristen N. Stevens, Muneesh Tewari, Jin S. Ahn, Gad Rennert, Victor Moreno, Tomas Kirchhoff, Bert Gold, Volker Assmann, Wael M. ElShamy, Jean-Francois Rual, Douglas Levine, Laura S. Rozek, Rebecca S. Gelman, Kristin C. Gunsalus, Roger A. Greenberg, Bijan Sobhian, Nicolas Bertin, Kavitha Venkatesan, Nono Ayivi-Guedehoussou, Xavier Sole, Pilar Hernandez, Conxi Lazaro, Katherine L. Nathanson, Barbara L. Weber, Michael E. Cusick, David E. Hill, Kenneth Offit, David M. Livingston, Stephen B. Gruber, Jeffrey D. Parvin, Marc Vidal posted to algorithm breast cancer expression networks by chrisamiller on 2008-06-26 21:38:59 as along with 11 people and 1 group tonamswish ajbattle jaimie koller jmuhlich jfr ealloza cjeans nedwards jdiezperezj phoenixzxl BioinfoCIPF
	Feedback Circuit among INK4 Tumor Suppressors Constrains Human Glioblastoma Development [My Copy] Cancer Cell, Vol. 13, No. 4. (8 April 2008), pp. 355-364. by Ruprecht Wiedemeyer, Cameron Brennan, Timothy P. Heffernan, et al.Yonghong Xiao, John Mahoney, Alexei Protopopov, Hongwu Zheng, Graham Bignell, Frank Furnari, Webster K. Cavenee, William C. Hahn, Koichi Ichimura, Peter V. Collins, Gerald C. Chu, Michael R. Stratton, Keith L. Ligon, Andrew P. Futreal, Lynda Chin posted to acgh algorithm cancer expression by chrisamiller on 2008-06-26 21:34:47 as along with 1 person crmlab
	Assessing the significance of chromosomal aberrations in cancer: Methodology and application to glioma [My Copy] Proceedings of the National Academy of Sciences (6 December 2007), 0710052104. by Rameen Beroukhim, Gad Getz, Leia Nghiemphu, et al.Jordi Barretina, Teli Hsueh, David Linhart, Igor Vivanco, Jeffrey C. Lee, Julie H. Huang, Sethu Alexander, Jinyan Du, Tweeny Kau, Roman K. Thomas, Kinjal Shah, Horacio Soto, Sven Perner, John Prensner, Ralph M. Debiasi, Francesca Demichelis, Charlie Hatton, Mark A. Rubin, Levi A. Garraway, Stan F. Nelson, Linda Liau, Mischel, Tim F. Cloughesy, Matthew Meyerson, Todd A. Golub, Eric S. Lander, Ingo K. Mellinghoff, William R. Sellers posted to acgh algorithm cancer recurrence by chrisamiller on 2008-06-26 21:12:17 as along with 8 people and 2 groups giovenko wimufi rdiaz srp33 jfr oelemento cerami loopback007 Cancer_Stem_Cells Glioma Reviews

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cancer	34
expression	25
algorithm	18
acgh	16
breast	14
networks	12
clustering	7
r	7
bioinformatics	6
gbm	6
mutations	6
tumors	6
genomics	5
go	5
sequencing	5
snp	5
subtypes	5
bioconductor	4
celllines	4
network	4
structural	4
academia	3
breakpoints	3
career	3
copynumber	3
esp	3
genomic	3
integration	3
assembly	2
browser	2
fusion	2
gaps	2
genome	2
microarray	2
opticalmapping	2
review	2
visualization	2
alignment	1
annotation	1
applications	1
archae	1
arrayexpress	1
bacteria	1
biclusters	1
bioninformatics	1
colorectal	1
database	1
design	1
dwd	1
firestorm	1
function	1
geneset	1
genesignature	1
hapmap	1
industry	1
informationtheory	1
instability	1
interface	1
kegg	1
library	1
linux	1
list	1
mapping	1
meta	1
metagenomic	1
metastasis	1
mirna	1
model	1
mutation	1
nextgen	1
obesity	1
online	1
optimization	1
package	1
paired-end	1
pathway	1
pca	1
platform	1
prediction	1
privacy	1
rae	1
recurrence	1
sequence	1
significance	1
software	1
solid	1
somatic	1
splicing	1
tcga	1
tool	1
tools	1
usability	1
utility	1
variation	1
yeast	1

chrisamiller's algorithm [18 articles] Export

chrisamiller's tags