chrisamiller's cancer [34 articles] Export

Recent papers added to chrisamiller's library classified by the tag cancer. You can also see everyone's cancer.

	Cancer-Specific High-Throughput Annotation of Somatic Mutations: Computational Prediction of Driver Missense Mutations [My Copy] Cancer Res, Vol. 69, No. 16. (15 August 2009), pp. 6660-6667. by Hannah Carter, Sining Chen, Leyla Isik, et al.Svitlana Tyekucheva, Victor E. Velculescu, Kenneth W. Kinzler, Bert Vogelstein, Rachel Karchin posted to somatic snp prediction mutation function cancer bioinformatics annotation by chrisamiller on 2009-10-20 00:31:42 as along with 5 people zufar kshameer burak ericrpaquet frohike
	Monosomy of Chromosome 10 Associated With Dysregulation of Epidermal Growth Factor Signaling in Glioblastomas [My Copy] JAMA, Vol. 302, No. 3. (15 July 2009), pp. 276-289. by Ajay K. Yadav, Jaclyn J. Renfrow, Denise M. Scholtens, et al.Hehuang Xie, George E. Duran, Claudia Bredel, Hannes Vogel, James P. Chandler, Arnab Chakravarti, Pierre A. Robe, Sunit Das, Adrienne C. Scheck, John A. Kessler, Marcelo B. Soares, Branimir I. Sikic, Griffith R. Harsh, Markus Bredel posted to gbm copynumber cancer by chrisamiller on 2009-09-24 16:46:56 as along with 1 person frohike
	Causes and consequences of microRNA dysregulation in cancer [My Copy] Nature Reviews Genetics, Vol. 10, No. 10. (01 October 2009), pp. 704-714. by Carlo M. Croce posted to review mirna cancer by chrisamiller on 2009-09-24 16:39:13 as along with 9 people and 1 group heliopais pattersonee frohike tonamswish valeriehilgers giovenko megraw ealloza misonneh microRNA
	Functional copy-number alterations in cancer. [My Copy] PloS one, Vol. 3, No. 9. (11 September 2008), e3179. by Barry S. Taylor, Jordi Barretina, Nicholas D. Socci, et al.Penelope Decarolis, Marc Ladanyi, Matthew Meyerson, Samuel Singer, Chris Sander posted to rae copynumber cancer algorithm acgh by chrisamiller on 2009-08-17 17:57:29 as along with 5 people and 1 group daed jfr huiminC oelemento Zephyrus Roswell Cancer Crosstalk
	Mutator Mutations Enhance Tumorigenic Efficiency across Fitness Landscapes [My Copy] PLoS ONE, Vol. 4, No. 6. (10 June 2009), e5860. by Robert A. Beckman posted to cancer model mutations by chrisamiller on 2009-07-14 22:58:12 as
	Identification of rare cancer driver mutations by network reconstruction [My Copy] Genome Research, Vol. 19, No. 9. (2 September 2009), pp. 1570-1578. by Ali Torkamani, Nicholas J. Schork posted to cancer integration mutations network by chrisamiller on 2009-07-14 21:47:38 as along with 4 people xingxu scmelton rdiaz jessopher
	Molecular Profiling of Breast Cancer Cell Lines Defines Relevant Tumor Models and Provides a Resource for Cancer Gene Discovery [My Copy] PLoS ONE, Vol. 4, No. 7. (3 July 2009), e6146. by Jessica Kao, Keyan Salari, Melanie Bocanegra, et al.Yoon-La Choi, Luc Girard, Jeet Gandhi, Kevin A. Kwei, Tina Hernandez-Boussard, Pei Wang, Adi F. Gazdar, John D. Minna, Jonathan R. Pollack posted to acgh breast cancer celllines expression integration tumors by chrisamiller on 2009-07-14 21:14:14 as along with 2 people eshirdel tonamswish
	Seeing the Forest for the Trees: Using the Gene Ontology to re-structure Hierarchical clustering. [My Copy] Bioinformatics (Oxford, England) (3 June 2009) by Dikla Dotan-Cohen, Simon Kasif, Avraham A A. Melkman posted to algorithm cancer clustering go by chrisamiller on 2009-06-12 16:27:43 as along with 5 people brianb nuin jmeppley fgibson dullhunk
	Comprehensive genomic characterization defines human glioblastoma genes and core pathways [My Copy] Nature, Vol. 455, No. 7216. (04 September 2008), pp. 1061-1068. posted to acgh cancer expression gbm integration sequencing tcga by chrisamiller on 2009-06-05 01:18:37 as along with 23 people and 2 groups iskathy srp33 dolchan ajbattle aezrin myzhang fenghezi jessopher jfr zufar wimufi jbhiatt frohike huiminC renatomilani ptrobajo cchand Zephyrus nuin brianb oelemento shikin shigepong Roswell Cancer Crosstalk GeneGo
	A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome [My Copy] Genome Research, Vol. 19, No. 2. (9 February 2009), pp. 167-177. by Oliver A. Hampton, Petra Den Hollander, Christopher A. Miller, et al.David A. Delgado, Jian Li, Cristian Coarfa, Ronald A. Harris, Stephen Richards, Steven E. Scherer, Donna M. Muzny, Richard A. Gibbs, Adrian V. Lee, Aleksandar Milosavljevic posted to breakpoints breast cancer celllines sequencing by chrisamiller on 2009-06-05 01:16:34 as along with 6 people and 2 groups burak myzhang jiezhou renatomilani songpku Zephyrus Roswell Cancer Crosstalk Breast Cancer Reading Club
	The UCSC Cancer Genomics Browser. [My Copy] Nature methods, Vol. 6, No. 4. (April 2009), pp. 239-240. by Jingchun Zhu, Zachary J. Sanborn, Stephen Benz, et al.Christopher Szeto, Fan Hsu, Robert M. Kuhn, Donna Karolchik, John Archie, Marc E. Lenburg, Laura J. Esserman, James W. Kent, David Haussler, Ting Wang posted to browser cancer genomic visualization by chrisamiller on 2009-04-07 05:03:09 as along with 3 people jfr guhjy neils
	Over half of breakpoints in gene pairs involved in cancer-specific recurrent translocations are mapped to human chromosomal fragile sites [My Copy] BMC Genomics, Vol. 10 (30 January 2009), 59. by Allison, Yuh-Hwa Wang posted to breakpoints cancer fusion genomic instability by chrisamiller on 2009-02-03 19:21:59 as
	The Hallmarks of Cancer [My Copy] Cell, Vol. 100, No. 1. (7 January 2000), pp. 57-70. by D. Hanahan posted to cancer by chrisamiller on 2009-01-03 17:37:46 as along with 14 people and 2 groups jessopher t2pp emiko tstricker reyez xingxu catcremona windman83 xico samoday ealloza jvonmoltke blackm0k srp33 WetBiology BioinfoCIPF
	Seeding and Propagation of Untransformed Mouse Mammary Cells in the Lung [My Copy] Science (28 August 2008), 1161621. by Katrina Podsypanina, Yi-Chieh N. Du, Martin Jechlinger, Levi J. Beverly, Dolores Hambardzumyan, Harold Varmus posted to cancer metastasis by chrisamiller on 2008-09-26 02:29:19 as along with 5 people and 3 groups jessopher myzhang ajaymalik songpku Zephyrus Breast Cancer Reading Club Breast cancer Roswell Cancer Crosstalk
	A multidimensional analysis of genes mutated in breast and colorectal cancers [My Copy] Genome Res. (10 August 2007), gr.6431107. by Jimmy Lin, Christine M. Gan, Xiaosong Zhang, et al.Sian Jones, Tobias Sjoblom, Laura D. Wood, Williams D. Parsons, Nickolas Papadopoulos, Kenneth W. Kinzler, Bert Vogelstein, Giovanni Parmigiani, Victor E. Velculescu posted to cancer expression mutations networks by chrisamiller on 2008-09-25 04:45:07 as along with 3 people jfr cerami xingxu
	Marked Genomic Differences Characterize Primary and Secondary Glioblastoma Subtypes and Identify Two Distinct Molecular and Clinical Secondary Glioblastoma Entities [My Copy] Cancer Res, Vol. 66, No. 23. (1 December 2006), pp. 11502-11513. by Elizabeth A. Maher, Cameron Brennan, Patrick Y. Wen, et al.Laura Durso, Keith L. Ligon, Aaron Richardson, Deepak Khatry, Bin Feng, Raktim Sinha, David N. Louis, John Quackenbush, Peter M. Black, Lynda Chin, Ronald A. Depinho posted to acgh cancer gbm subtypes by chrisamiller on 2008-09-25 04:01:45 as along with 1 person caseybrown
	Gene expression profiling reveals molecularly and clinically distinct subtypes of glioblastoma multiforme [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 16. (19 April 2005), pp. 5814-5819. by Yu Liang, Maximilian Diehn, Nathan Watson, et al.Andrew W. Bollen, Ken D. Aldape, M. Kelly Nicholas, Kathleen R. Lamborn, Mitchel S. Berger, David Botstein, Patrick O. Brown, Mark A. Israel posted to cancer expression gbm subtypes by chrisamiller on 2008-09-25 03:54:54 as along with 2 people aezrin srp33
	PTEN-deficient cancers depend on PIK3CB [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 35. (2008), pp. 13057-13062. by Susan Wee, Dmitri Wiederschain, Sauveur-Michel Maira, et al.Alice Loo, Christine Miller, Rosalie Debeaumont, Frank Stegmeier, Yung-Mae Yao, Christoph Lengauer posted to cancer colorectal by chrisamiller on 2008-09-25 03:53:33 as along with 1 person guhjy
	Integrated array-comparative genomic hybridization and expression array profiles identify clinically relevant molecular subtypes of glioblastoma. [My Copy] Cancer research, Vol. 65, No. 5. (1 March 2005), pp. 1678-1686. by Janice M. Nigro, Anjan Misra, Li Zhang, et al.Ivan Smirnov, Howard Colman, Chandi Griffin, Natalie Ozburn, Mingang Chen, Edward Pan, Dimpy Koul, Alfred K. Yung, Burt G. Feuerstein, Kenneth D. Aldape posted to acgh cancer clustering expression gbm by chrisamiller on 2008-09-25 03:43:57 as along with 4 people aezrin srp33 jfr bioguru2000
	The Consensus Coding Sequences of Human Breast and Colorectal Cancers [My Copy] Science (7 September 2006), 1133427. by Tobias Sjoblom, Sian Jones, Laura D. Wood, et al.Williams D. Parsons, Jimmy Lin, Thomas Barber, Diana Mandelker, Rebecca J. Leary, Janine Ptak, Natalie Silliman, Steve Szabo, Phillip Buckhaults, Christopher Farrell, Paul Meeh, Sanford D. Markowitz, Joseph Willis, Dawn Dawson, James K. Willson, Adi F. Gazdar, James Hartigan, Leo Wu, Changsheng Liu, Giovanni Parmigiani, Ben H. Park, Kurtis E. Bachman, Nickolas Papadopoulos, Bert Vogelstein, Kenneth W. Kinzler, Victor E. Velculescu posted to breast cancer mutations sequencing tumors by chrisamiller on 2008-06-26 23:29:45 as along with 22 people and 1 group backlin alessandrobrozzi wimufi aalibes bicko jfr tuck balajis nickluscombe rdiaz eisei jackjackjjj vicsta jtaylor emb51 ramensky massivemayhem cerami xingxu mingzhi frohike gwenknight EBI-regulation
	High-resolution genomic and expression analyses of copy number alterations in breast tumors [My Copy] Genes, Chromosomes and Cancer, Vol. 47, No. 6. (2008), pp. 530-542. by Peter M. Haverty, Jane Fridlyand, Li Li, et al.Gad Getz, Rameen Beroukhim, Scott Lohr, Thomas D. Wu, Guy Cavet, Zemin Zhang, John Chant posted to acgh algorithm breast cancer expression tumors by chrisamiller on 2008-06-26 22:48:43 as along with 2 people frohike rdiaz
	Novel patterns of genome rearrangement and their association with survival in breast cancer. [My Copy] Genome Res, Vol. 16, No. 12. (December 2006), pp. 1465-1479. by J. Hicks, A. Krasnitz, B. Lakshmi, et al.N. E. Navin, M. Riggs, E. Leibu, D. Esposito, J. Alexander, J. Troge, V. Grubor, S. Yoon, M. Wigler, K. Ye, A. L. Børresen-Dale, B. Naume, E. Schlicting, L. Norton, T. Hägerström, L. Skoog, G. Auer, S. Månér, P. Lundin, A. Zetterberg posted to acgh breast cancer firestorm by chrisamiller on 2008-06-26 22:30:49 as along with 2 people jfr cerami
	Breast tumor copy number aberration phenotypes and genomic instability. [My Copy] BMC Cancer, Vol. 6 (2006) by J. Fridlyand, A. M. Snijders, B. Ylstra, et al.H. Li, A. Olshen, R. Segraves, S. Dairkee, T. Tokuyasu, B. M. Ljung, A. N. Jain, J. McLennan, J. Ziegler, K. Chin, S. Devries, H. Feiler, J. W. Gray, F. Waldman, D. Pinkel, D. G. Albertson posted to acgh breast cancer by chrisamiller on 2008-06-26 21:58:32 as along with 4 people jfr rdiaz Garamonfok frohike
	Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing. [My Copy] Nature genetics, Vol. 40, No. 6. (27 June 2008), pp. 722-729. by Peter J. Campbell, Philip J. Stephens, Erin D. Pleasance, et al.Sarah O'Meara, Heng Li, Thomas Santarius, Lucy A. Stebbings, Catherine Leroy, Sarah Edkins, Claire Hardy, Jon W. Teague, Andrew Menzies, Ian Goodhead, Daniel J. Turner, Christopher M. Clee, Michael A. Quail, Antony Cox, Clive Brown, Richard Durbin, Matthew E. Hurles, Paul A. Edwards, Graham R. Bignell, Michael R. Stratton, P. Andrew Futreal posted to breakpoints cancer esp genomics nextgen structural by chrisamiller on 2008-06-26 21:54:22 as along with 12 people chvlyl dakelley APRegier myzhang jessopher frohike smiddha xingxu daed matthewsuderman jfr caseybrown
	Revealing targeted therapy for human cancer by gene module maps. [My Copy] Cancer research, Vol. 68, No. 2. (15 January 2008), pp. 369-378. by D. J. Wong, D. S. Nuyten, A. Regev, et al.M. Lin, A. S. Adler, E. Segal, M. J. van de Vijver, H. Y. Chang posted to cancer expression go networks by chrisamiller on 2008-06-26 21:43:01 as along with 2 people frohike ptrobajo
	Network modeling links breast cancer susceptibility and centrosome dysfunction [My Copy] Nature Genetics, Vol. 39, No. 11. (07 October 2007), pp. 1338-1349. by Miguel A. Pujana, Jing-Dong J. Han, Lea M. Starita, et al.Kristen N. Stevens, Muneesh Tewari, Jin S. Ahn, Gad Rennert, Victor Moreno, Tomas Kirchhoff, Bert Gold, Volker Assmann, Wael M. ElShamy, Jean-Francois Rual, Douglas Levine, Laura S. Rozek, Rebecca S. Gelman, Kristin C. Gunsalus, Roger A. Greenberg, Bijan Sobhian, Nicolas Bertin, Kavitha Venkatesan, Nono Ayivi-Guedehoussou, Xavier Sole, Pilar Hernandez, Conxi Lazaro, Katherine L. Nathanson, Barbara L. Weber, Michael E. Cusick, David E. Hill, Kenneth Offit, David M. Livingston, Stephen B. Gruber, Jeffrey D. Parvin, Marc Vidal posted to algorithm breast cancer expression networks by chrisamiller on 2008-06-26 21:38:59 as along with 11 people and 1 group tonamswish ajbattle jaimie koller jmuhlich jfr ealloza cjeans nedwards jdiezperezj phoenixzxl BioinfoCIPF
	High resolution genomic analysis of sporadic breast cancer using array-based comparative genomic hybridization [My Copy] Breast Cancer Research, Vol. 7, No. 6. (2005), pp. R1186-R1198. by Tara Naylor, Joel Greshock, Yan Wang, et al.Theresa Colligon, Q. C. Yu, Virginia Clemmer, Tal Zaks, Barbara Weber posted to acgh breast cancer celllines tumors by chrisamiller on 2008-06-26 21:36:49 as
	Feedback Circuit among INK4 Tumor Suppressors Constrains Human Glioblastoma Development [My Copy] Cancer Cell, Vol. 13, No. 4. (8 April 2008), pp. 355-364. by Ruprecht Wiedemeyer, Cameron Brennan, Timothy P. Heffernan, et al.Yonghong Xiao, John Mahoney, Alexei Protopopov, Hongwu Zheng, Graham Bignell, Frank Furnari, Webster K. Cavenee, William C. Hahn, Koichi Ichimura, Peter V. Collins, Gerald C. Chu, Michael R. Stratton, Keith L. Ligon, Andrew P. Futreal, Lynda Chin posted to acgh algorithm cancer expression by chrisamiller on 2008-06-26 21:34:47 as along with 1 person crmlab
	High expression of lymphocyte-associated genes in node-negative HER2+ breast cancers correlates with lower recurrence rates. [My Copy] Cancer Res, Vol. 67, No. 22. (15 November 2007), pp. 10669-10676. by G. Alexe, G. S. Dalgin, D. Scanfeld, et al.P. Tamayo, J. P. Mesirov, C. DeLisi, L. Harris, N. Barnard, M. Martel, A. J. Levine, S. Ganesan, G. Bhanot posted to breast cancer clustering expression pca by chrisamiller on 2008-06-26 21:26:59 as along with 2 people jfr aviad_work
	Merging microarray data from separate breast cancer studies provides a robust prognostic test [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (27 February 2008), 125. by Lei Xu, Aik Tan, Raimond Winslow, Donald Geman posted to breast cancer expression genesignature by chrisamiller on 2008-06-26 21:24:27 as along with 6 people daforerog Zephyrus laral frohike jfr shigepong
	Assessing the significance of chromosomal aberrations in cancer: Methodology and application to glioma [My Copy] Proceedings of the National Academy of Sciences (6 December 2007), 0710052104. by Rameen Beroukhim, Gad Getz, Leia Nghiemphu, et al.Jordi Barretina, Teli Hsueh, David Linhart, Igor Vivanco, Jeffrey C. Lee, Julie H. Huang, Sethu Alexander, Jinyan Du, Tweeny Kau, Roman K. Thomas, Kinjal Shah, Horacio Soto, Sven Perner, John Prensner, Ralph M. Debiasi, Francesca Demichelis, Charlie Hatton, Mark A. Rubin, Levi A. Garraway, Stan F. Nelson, Linda Liau, Mischel, Tim F. Cloughesy, Matthew Meyerson, Todd A. Golub, Eric S. Lander, Ingo K. Mellinghoff, William R. Sellers posted to acgh algorithm cancer recurrence by chrisamiller on 2008-06-26 21:12:17 as along with 8 people and 2 groups giovenko wimufi rdiaz srp33 jfr oelemento cerami loopback007 Cancer_Stem_Cells Glioma Reviews
	High-resolution array-CGH and expression profiling identifies a novel genomic subtype of ER negative breast cancer [My Copy] Genome Biology, Vol. 8 (09 October 2007), R215. by Suet F. Chin, Andrew E. Teschendorff, John C. Marioni, et al.Yanzhong Wang, Nuno L. Barbosa-Morais, Natalie P. Thorne, Jose L. Costa, Sarah E. Pinder, Mark A. van de Wiel, Andrew R. Green, Ian O. Ellis, Peggy L. Porter, Simon Tavare, James D. Brenton, Bauke Ylstra, Carlos Caldas posted to acgh breast cancer subtypes tumors by chrisamiller on 2008-06-26 21:10:19 as along with 3 people frohike jfr rdiaz
	A collection of breast cancer cell lines for the study of functionally distinct cancer subtypes [My Copy] Cancer Cell, Vol. 10, No. 6. (December 2006), pp. 515-527. by Richard M. Neve, Koei Chin, Jane Fridlyand, et al.Jennifer Yeh, Frederick L. Baehner, Tea Fevr, Laura Clark, Nora Bayani, Jean-Philippe Coppe, Frances Tong posted to acgh breast cancer celllines clustering expression subtypes by chrisamiller on 2008-06-26 21:08:43 as along with 5 people oelemento jfr lhonigberg jayster4 jdiezperezj
	Genomic and transcriptional aberrations linked to breast cancer pathophysiologies [My Copy] Cancer Cell, Vol. 10, No. 6. (December 2006), pp. 529-541. by Koei Chin, Sandy Devries, Jane Fridlyand, et al.Paul T. Spellman, Ritu Roydasgupta, Wen-Lin Kuo, Anna Lapuk, Richard M. Neve, Zuwei Qian, Tom Ryder posted to acgh breast cancer clustering expression subtypes tumors by chrisamiller on 2008-06-26 21:07:44 as along with 4 people engelhardt oelemento jfr frohike

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cancer	34
expression	25
algorithm	18
acgh	16
breast	14
networks	12
clustering	7
r	7
bioinformatics	6
gbm	6
mutations	6
tumors	6
genomics	5
go	5
sequencing	5
snp	5
subtypes	5
bioconductor	4
celllines	4
network	4
structural	4
academia	3
breakpoints	3
career	3
copynumber	3
esp	3
genomic	3
integration	3
assembly	2
browser	2
fusion	2
gaps	2
genome	2
microarray	2
opticalmapping	2
review	2
visualization	2
alignment	1
annotation	1
applications	1
archae	1
arrayexpress	1
bacteria	1
biclusters	1
bioninformatics	1
colorectal	1
database	1
design	1
dwd	1
firestorm	1
function	1
geneset	1
genesignature	1
hapmap	1
industry	1
informationtheory	1
instability	1
interface	1
kegg	1
library	1
linux	1
list	1
mapping	1
meta	1
metagenomic	1
metastasis	1
mirna	1
model	1
mutation	1
nextgen	1
obesity	1
online	1
optimization	1
package	1
paired-end	1
pathway	1
pca	1
platform	1
prediction	1
privacy	1
rae	1
recurrence	1
sequence	1
significance	1
software	1
solid	1
somatic	1
splicing	1
tcga	1
tool	1
tools	1
usability	1
utility	1
variation	1
yeast	1

chrisamiller's cancer [34 articles] Export

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