chrisamiller's expression [25 articles] Export

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	Molecular Profiling of Breast Cancer Cell Lines Defines Relevant Tumor Models and Provides a Resource for Cancer Gene Discovery [My Copy] PLoS ONE, Vol. 4, No. 7. (3 July 2009), e6146. by Jessica Kao, Keyan Salari, Melanie Bocanegra, et al.Yoon-La Choi, Luc Girard, Jeet Gandhi, Kevin A. Kwei, Tina Hernandez-Boussard, Pei Wang, Adi F. Gazdar, John D. Minna, Jonathan R. Pollack posted to acgh breast cancer celllines expression integration tumors by chrisamiller on 2009-07-14 21:14:14 as along with 2 people eshirdel tonamswish
	Comprehensive genomic characterization defines human glioblastoma genes and core pathways [My Copy] Nature, Vol. 455, No. 7216. (04 September 2008), pp. 1061-1068. posted to acgh cancer expression gbm integration sequencing tcga by chrisamiller on 2009-06-05 01:18:37 as along with 23 people and 2 groups iskathy srp33 dolchan ajbattle aezrin myzhang fenghezi jessopher jfr zufar wimufi jbhiatt frohike huiminC renatomilani ptrobajo cchand Zephyrus nuin brianb oelemento shikin shigepong Roswell Cancer Crosstalk GeneGo
	Differential splicing using whole-transcript microarrays. [My Copy] BMC bioinformatics, Vol. 10 (22 May 2009), 156. by M. D. Robinson, T. P. Speed posted to expression fusion microarray package r splicing by chrisamiller on 2009-05-26 18:29:48 as along with 5 people and 1 group guhjy dswan lwaldron humburg neils Bioinformatics
	A Differential Wiring Analysis of Expression Data Correctly Identifies the Gene Containing the Causal Mutation [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (1 May 2009), e1000382. by Nicholas J. Hudson, Antonio Reverter, Brian P. Dalrymple posted to expression mutations network by chrisamiller on 2009-05-05 22:46:41 as along with 10 people rdiaz guhjy tmmurali Borelli giovanni cabbagesofdoom roys dswan ptrobajo dolchan
	A multidimensional analysis of genes mutated in breast and colorectal cancers [My Copy] Genome Res. (10 August 2007), gr.6431107. by Jimmy Lin, Christine M. Gan, Xiaosong Zhang, et al.Sian Jones, Tobias Sjoblom, Laura D. Wood, Williams D. Parsons, Nickolas Papadopoulos, Kenneth W. Kinzler, Bert Vogelstein, Giovanni Parmigiani, Victor E. Velculescu posted to cancer expression mutations networks by chrisamiller on 2008-09-25 04:45:07 as along with 3 people jfr cerami xingxu
	Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 43. (25 October 2005), pp. 15545-15550. by Aravind Subramanian, Pablo Tamayo, Vamsi K. Mootha, et al.Sayan Mukherjee, Benjamin L. Ebert, Michael A. Gillette, Amanda Paulovich, Scott L. Pomeroy, Todd R. Golub, Eric S. Lander, Jill P. Mesirov posted to algorithm expression networks by chrisamiller on 2008-09-25 04:37:30 as along with 44 people and 4 groups miskar giovenko greg dolchan pattersonee mhamidi jperkins zufar ptrobajo antonkratz yaredo tmmurali VGreiff daforerog paszkows ipark-kaist bertelsen ajbattle jessopher askrajiv idonaldson ihpark dragonrez jfr balajis maryee xwbcn hpiwowar aviad_work ealloza jdiggans jeremymiller frohike hawkeyehammer schuylrp natstreet heliopais shikin waghsk roys ellakat srp33 sgoetz AbnerCYH Bioinformatics BioinfoCIPF GeschwindLab Indigene
	Gene expression profiling reveals molecularly and clinically distinct subtypes of glioblastoma multiforme [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 16. (19 April 2005), pp. 5814-5819. by Yu Liang, Maximilian Diehn, Nathan Watson, et al.Andrew W. Bollen, Ken D. Aldape, M. Kelly Nicholas, Kathleen R. Lamborn, Mitchel S. Berger, David Botstein, Patrick O. Brown, Mark A. Israel posted to cancer expression gbm subtypes by chrisamiller on 2008-09-25 03:54:54 as along with 2 people aezrin srp33
	Integrated array-comparative genomic hybridization and expression array profiles identify clinically relevant molecular subtypes of glioblastoma. [My Copy] Cancer research, Vol. 65, No. 5. (1 March 2005), pp. 1678-1686. by Janice M. Nigro, Anjan Misra, Li Zhang, et al.Ivan Smirnov, Howard Colman, Chandi Griffin, Natalie Ozburn, Mingang Chen, Edward Pan, Dimpy Koul, Alfred K. Yung, Burt G. Feuerstein, Kenneth D. Aldape posted to acgh cancer clustering expression gbm by chrisamiller on 2008-09-25 03:43:57 as along with 4 people aezrin srp33 jfr bioguru2000
	A Population Proportion approach for ranking differentially expressed genes [My Copy] BMC Bioinformatics, Vol. 9 (18 September 2008), 380. by Mugdha Gadgil posted to algorithm expression by chrisamiller on 2008-09-25 00:05:41 as along with 1 person guhjy
	Comprehensive analysis of affymetrix exon arrays using BioConductor. [My Copy] PLoS computational biology, Vol. 4, No. 2. (February 2008) by M. J. Okoniewski, C. J. Miller posted to bioconductor expression r by chrisamiller on 2008-09-10 03:28:36 as along with 7 people daveGerrard floatingpoint guhjy neils giovenko jfr eskay
	High-resolution genomic and expression analyses of copy number alterations in breast tumors [My Copy] Genes, Chromosomes and Cancer, Vol. 47, No. 6. (2008), pp. 530-542. by Peter M. Haverty, Jane Fridlyand, Li Li, et al.Gad Getz, Rameen Beroukhim, Scott Lohr, Thomas D. Wu, Guy Cavet, Zemin Zhang, John Chant posted to acgh algorithm breast cancer expression tumors by chrisamiller on 2008-06-26 22:48:43 as along with 2 people frohike rdiaz
	PADGE: analysis of heterogeneous patterns of differential gene expression. [My Copy] Physiological genomics, Vol. 32, No. 1. (19 December 2007), pp. 154-159. by Li Li, Amitabha Chaudhuri, John Chant, Zhijun Tang posted to algorithm expression by chrisamiller on 2008-06-26 22:46:22 as along with 2 people jfr guhjy
	Microarray data mining: A novel optimization-based approach to uncover biologically coherent structures [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Meng Tan, Erin Smith, James Broach, Christodoulos Floudas posted to algorithm clustering expression go networks by chrisamiller on 2008-06-26 22:43:55 as along with 5 people carlk cswinburne jfr GeeSharpMinor guhjy
	Biclustering algorithms for biological data analysis: a survey. [My Copy] IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM In IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 1, No. 1. (r 2004), pp. 24-45. by Sara C. Madeira, Arlindo L. Oliveira posted to algorithm biclusters clustering expression by chrisamiller on 2008-06-26 22:33:37 as along with 14 people marti socwangnan jurgenjanes zufar ilyashl saman_vp ihpark tvdbulck librain dps bozdagd ealloza carlk tmmurali
	Network-Based Analysis of Affected Biological Processes in Type 2 Diabetes Models [My Copy] PLoS Genet, Vol. 3, No. 6. (15 June 2007), e96. by Manway Liu, Arthur Liberzon, Sek W. Kong, et al.Weil R. Lai, Peter J. Park, Isaac S. Kohane, Simon Kasif posted to algorithm expression networks by chrisamiller on 2008-06-26 21:50:59 as along with 6 people ptrobajo roys tmmurali zwang ajgentles cabbagezs
	Revealing targeted therapy for human cancer by gene module maps. [My Copy] Cancer research, Vol. 68, No. 2. (15 January 2008), pp. 369-378. by D. J. Wong, D. S. Nuyten, A. Regev, et al.M. Lin, A. S. Adler, E. Segal, M. J. van de Vijver, H. Y. Chang posted to cancer expression go networks by chrisamiller on 2008-06-26 21:43:01 as along with 2 people frohike ptrobajo
	Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data [My Copy] Nat Genet, Vol. 34, No. 2. (11 May 2003), pp. 166-176. by Eran Segal, Michael Shapira, Aviv Regev, et al.Dana Pe'er, David Botstein, Daphne Koller, Nir Friedman posted to expression networks yeast by chrisamiller on 2008-06-26 21:41:00 as along with 25 people and 1 group stharward bertelsen ipark-kaist VGreiff benjaminsb wangbo ajbattle cswinburne ggallone ealloza orzenil tuck bayesian wnpx tabu koller olympos fishtank dimatura karfunkel roys pkm dragonrez tvdbulck aviad_work Jarman Lab
	Network modeling links breast cancer susceptibility and centrosome dysfunction [My Copy] Nature Genetics, Vol. 39, No. 11. (07 October 2007), pp. 1338-1349. by Miguel A. Pujana, Jing-Dong J. Han, Lea M. Starita, et al.Kristen N. Stevens, Muneesh Tewari, Jin S. Ahn, Gad Rennert, Victor Moreno, Tomas Kirchhoff, Bert Gold, Volker Assmann, Wael M. ElShamy, Jean-Francois Rual, Douglas Levine, Laura S. Rozek, Rebecca S. Gelman, Kristin C. Gunsalus, Roger A. Greenberg, Bijan Sobhian, Nicolas Bertin, Kavitha Venkatesan, Nono Ayivi-Guedehoussou, Xavier Sole, Pilar Hernandez, Conxi Lazaro, Katherine L. Nathanson, Barbara L. Weber, Michael E. Cusick, David E. Hill, Kenneth Offit, David M. Livingston, Stephen B. Gruber, Jeffrey D. Parvin, Marc Vidal posted to algorithm breast cancer expression networks by chrisamiller on 2008-06-26 21:38:59 as along with 11 people and 1 group tonamswish ajbattle jaimie koller jmuhlich jfr ealloza cjeans nedwards jdiezperezj phoenixzxl BioinfoCIPF
	Feedback Circuit among INK4 Tumor Suppressors Constrains Human Glioblastoma Development [My Copy] Cancer Cell, Vol. 13, No. 4. (8 April 2008), pp. 355-364. by Ruprecht Wiedemeyer, Cameron Brennan, Timothy P. Heffernan, et al.Yonghong Xiao, John Mahoney, Alexei Protopopov, Hongwu Zheng, Graham Bignell, Frank Furnari, Webster K. Cavenee, William C. Hahn, Koichi Ichimura, Peter V. Collins, Gerald C. Chu, Michael R. Stratton, Keith L. Ligon, Andrew P. Futreal, Lynda Chin posted to acgh algorithm cancer expression by chrisamiller on 2008-06-26 21:34:47 as along with 1 person crmlab
	An integrative genomics approach to infer causal associations between gene expression and disease. [My Copy] Nature genetics, Vol. 37, No. 7. (19 July 2005), pp. 710-717. by Eric E. Schadt, John Lamb, Xia Yang, et al.Jun Zhu, Steve Edwards, Debraj Guhathakurta, Solveig K. Sieberts, Stephanie Monks, Marc Reitman, Chunsheng Zhang, Pek Yee Y. Lum, Amy Leonardson, Rolf Thieringer, Joseph M. Metzger, Liming Yang, John Castle, Haoyuan Zhu, Shera F. Kash, Thomas A. Drake, Alan Sachs, Aldons J. Lusis posted to expression networks by chrisamiller on 2008-06-26 21:29:16 as along with 17 people and 1 group mnishimu roys nicholso lawraga ocs pcahan1 tuck brant ckehl koller giovanni lp2 dejori natstreet jo_davies caseybrown mitko GeschwindLab
	High expression of lymphocyte-associated genes in node-negative HER2+ breast cancers correlates with lower recurrence rates. [My Copy] Cancer Res, Vol. 67, No. 22. (15 November 2007), pp. 10669-10676. by G. Alexe, G. S. Dalgin, D. Scanfeld, et al.P. Tamayo, J. P. Mesirov, C. DeLisi, L. Harris, N. Barnard, M. Martel, A. J. Levine, S. Ganesan, G. Bhanot posted to breast cancer clustering expression pca by chrisamiller on 2008-06-26 21:26:59 as along with 2 people jfr aviad_work
	Merging microarray data from separate breast cancer studies provides a robust prognostic test. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (27 February 2008), 125. by Lei Xu, Aik Choon C. Tan, Raimond L. Winslow, Donald Geman posted to breast cancer expression genesignature by chrisamiller on 2008-06-26 21:24:27 as along with 6 people daforerog Zephyrus laral frohike jfr shigepong
	Variations in DNA elucidate molecular networks that cause disease. [My Copy] Nature, Vol. 452, No. 7186. (27 March 2008), pp. 429-435. by Yanqing Chen, Jun Zhu, Pek Yee Y. Lum, et al.Xia Yang, Shirly Pinto, Douglas J. MacNeil, Chunsheng Zhang, John Lamb, Stephen Edwards, Solveig K. Sieberts, Amy Leonardson, Lawrence W. Castellini, Susanna Wang, Marie-France F. Champy, Bin Zhang, Valur Emilsson, Sudheer Doss, Anatole Ghazalpour, Steve Horvath, Thomas A. Drake, Aldons J. Lusis, Eric E. Schadt posted to expression networks obesity by chrisamiller on 2008-06-26 21:22:53 as along with 22 people and 2 groups mnishimu Zephyrus biomcgary daforerog roys druvus nicklynch semrich brianb jbsaltz djkt raiyar lp2 jo_davies shikin caseybrown ptrobajo guhjy echinotrix natstreet sanchezbuelna jfr 4th_floor_JC GeneGo
	A collection of breast cancer cell lines for the study of functionally distinct cancer subtypes [My Copy] Cancer Cell, Vol. 10, No. 6. (December 2006), pp. 515-527. by Richard M. Neve, Koei Chin, Jane Fridlyand, et al.Jennifer Yeh, Frederick L. Baehner, Tea Fevr, Laura Clark, Nora Bayani, Jean-Philippe Coppe, Frances Tong posted to acgh breast cancer celllines clustering expression subtypes by chrisamiller on 2008-06-26 21:08:43 as along with 5 people oelemento jfr lhonigberg jayster4 jdiezperezj
	Genomic and transcriptional aberrations linked to breast cancer pathophysiologies [My Copy] Cancer Cell, Vol. 10, No. 6. (December 2006), pp. 529-541. by Koei Chin, Sandy Devries, Jane Fridlyand, et al.Paul T. Spellman, Ritu Roydasgupta, Wen-Lin Kuo, Anna Lapuk, Richard M. Neve, Zuwei Qian, Tom Ryder posted to acgh breast cancer clustering expression subtypes tumors by chrisamiller on 2008-06-26 21:07:44 as along with 4 people engelhardt oelemento jfr frohike

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cancer	34
expression	25
algorithm	18
acgh	16
breast	14
networks	12
clustering	7
r	7
bioinformatics	6
gbm	6
mutations	6
tumors	6
genomics	5
go	5
sequencing	5
snp	5
subtypes	5
bioconductor	4
celllines	4
network	4
structural	4
academia	3
breakpoints	3
career	3
copynumber	3
esp	3
genomic	3
integration	3
assembly	2
browser	2
fusion	2
gaps	2
genome	2
microarray	2
opticalmapping	2
review	2
visualization	2
alignment	1
annotation	1
applications	1
archae	1
arrayexpress	1
bacteria	1
biclusters	1
bioninformatics	1
colorectal	1
database	1
design	1
dwd	1
firestorm	1
function	1
geneset	1
genesignature	1
hapmap	1
industry	1
informationtheory	1
instability	1
interface	1
kegg	1
library	1
linux	1
list	1
mapping	1
meta	1
metagenomic	1
metastasis	1
mirna	1
model	1
mutation	1
nextgen	1
obesity	1
online	1
optimization	1
package	1
paired-end	1
pathway	1
pca	1
platform	1
prediction	1
privacy	1
rae	1
recurrence	1
sequence	1
significance	1
software	1
solid	1
somatic	1
splicing	1
tcga	1
tool	1
tools	1
usability	1
utility	1
variation	1
yeast	1

chrisamiller's expression [25 articles] Export

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