The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data Export

@article{2004Porter, abstract = {The Catalytic Site Atlas (CSA) provides catalytic residue annotation for enzymes in the Protein Data Bank. It is available online at http://www.ebi.ac.uk/thornton-srv/databases/CSA. The database consists of two types of annotated site: an original hand-annotated set containing information extracted from the primary literature, using defined criteria to assign catalytic residues, and an additional homologous set, containing annotations inferred by PSI-BLAST and sequence alignment to one of the original set. The CSA can be queried via Swiss-Prot identifier and EC number, as well as by PDB code. CSA Version 1.0 contains 177 original hand- annotated entries and 2608 homologous entries, and covers [\~{}]30\% of all EC numbers found in PDB. The CSA will be updated on a monthly basis to include homologous sites found in new PDBs, and new hand-annotated enzymes as and when their annotatation is completed. 10.1093/nar/gkh028}, address = {EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.}, author = {Porter, C. T. and Bartlett, G. J. and Thornton, J. M.}, citeulike-article-id = {276166}, citeulike-linkout-0 = {http://dx.doi.org/10.1093/nar/gkh028}, citeulike-linkout-1 = {http://nar.oxfordjournals.org/content/32/suppl_1/D129.abstract}, citeulike-linkout-2 = {http://nar.oxfordjournals.org/content/32/suppl_1/D129.full.pdf}, citeulike-linkout-3 = {http://nar.oxfordjournals.org/cgi/content/abstract/32/suppl_1/D129}, citeulike-linkout-4 = {http://view.ncbi.nlm.nih.gov/pubmed/14681376}, citeulike-linkout-5 = {http://www.hubmed.org/display.cgi?uids=14681376}, day = {1}, doi = {10.1093/nar/gkh028}, issn = {1362-4962}, journal = {Nucl. Acids Res.}, keywords = {catalytic\_sites, csa, refs\_catalytic}, month = {January}, number = {suppl\_1}, pages = {D129--133}, posted-at = {2005-08-06 22:03:15}, priority = {2}, title = {The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data}, url = {http://dx.doi.org/10.1093/nar/gkh028}, volume = {32}, year = {2004} }

TY - JOUR ID - 2004Porter L3 - citeulike-article-id:276166 N2 - The Catalytic Site Atlas (CSA) provides catalytic residue annotation for enzymes in the Protein Data Bank. It is available online at http://www.ebi.ac.uk/thornton-srv/databases/CSA. The database consists of two types of annotated site: an original hand-annotated set containing information extracted from the primary literature, using defined criteria to assign catalytic residues, and an additional homologous set, containing annotations inferred by PSI-BLAST and sequence alignment to one of the original set. The CSA can be queried via Swiss-Prot identifier and EC number, as well as by PDB code. CSA Version 1.0 contains 177 original hand- annotated entries and 2608 homologous entries, and covers [~]30% of all EC numbers found in PDB. The CSA will be updated on a monthly basis to include homologous sites found in new PDBs, and new hand-annotated enzymes as and when their annotatation is completed. 10.1093/nar/gkh028 IS - suppl_1 JF - Nucl. Acids Res. SN - 1362-4962 AD - EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. EP - 133 TI - The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data VL - 32 SP - D129 KW - catalytic_sites KW - csa KW - refs_catalytic AU - Porter, CT AU - Bartlett, GJ AU - Thornton, JM PY - 2004/01/01/ UR - http://dx.doi.org/10.1093/nar/gkh028 ER -