chrn's catalytic_sites [21 articles] Export

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	Coupling between catalytic site and collective dynamics: a requirement for mechanochemical activity of enzymes. [My Copy] Structure (Camb), Vol. 13, No. 6. (June 2005), pp. 893-904. by L. W. Yang, I. Bahar posted to catalytic_sites by chrn on 2005-08-08 17:28:15 as along with 4 people BragilMassoud baaden lna aqeel
	Analysis and prediction of the location of catalytic residues in enzymes. [My Copy] Protein Eng, Vol. 2, No. 2. (July 1988), pp. 127-138. by M. J. Zvelebil, M. J. Sternberg posted to catalytic_sites refs_catalytic by chrn on 2005-08-08 10:48:20 as along with 1 person baaden
	The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data [My Copy] Nucl. Acids Res., Vol. 32, No. suppl_1. (1 January 2004), pp. D129-133. by C. T. Porter, G. J. Bartlett, J. M. Thornton posted to catalytic_sites csa refs_catalytic by chrn on 2005-08-06 22:03:15 as along with 12 people and 2 groups barmak7282 ucbcjbm pablocarb tjimenez baaden jwm gbart tny sriram_s massivemayhem siebertm grottenolm Radiation_Damage Stressosome
	Prediction of functional sites by analysis of sequence and structure conservation. [My Copy] Protein Sci, Vol. 13, No. 4. (April 2004), pp. 884-892. by A. R. Panchenko, F. Kondrashov, S. Bryant posted to catalytic_sites by chrn on 2005-08-06 00:09:09 as along with 5 people ramiro2k skhadar sriram_s tanuja_rastogi Jporci
	Searching for functional sites in protein structures. [My Copy] Current opinion in chemical biology, Vol. 8, No. 1. (February 2004), pp. 3-7. by Susan Jones, Janet M. Thornton posted to catalytic_sites by chrn on 2005-08-06 00:08:02 as along with 7 people and 1 group qluo BragilMassoud LeightonP Einat proteasome nickolay jwm structural_bioinformatics
	Using a neural network and spatial clustering to predict the location of active sites in enzymes. [My Copy] J Mol Biol, Vol. 330, No. 4. (18 July 2003), pp. 719-734. by A. Gutteridge, G. J. Bartlett, J. M. Thornton posted to catalytic_sites by chrn on 2005-08-05 23:48:01 as along with 7 people and 1 group ramiro2k Einat alexg gbart eweaver sriram_s tjimenez structural_bioinformatics
	An accurate, sensitive, and scalable method to identify functional sites in protein structures. [My Copy] Journal of molecular biology, Vol. 326, No. 1. (7 February 2003), pp. 255-261. by H. Yao, D. M. Kristensen, I. Mihalek, et al.M. E. Sowa, C. Shaw, M. Kimmel, L. Kavraki, O. Lichtarge posted to catalytic_sites by chrn on 2005-08-05 23:45:55 as along with 5 people qluo bicko beeblebrox nickolay sriram_s
	Predicting functional sites with an automated algorithm suitable for heterogeneous datasets. [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (13 May 2005) by D. La, D. R. Livesay posted to catalytic_sites by chrn on 2005-08-05 23:29:28 as along with 3 people and 1 group Einat mingzhi penpen926 structural_bioinformatics
	REVCOM: a robust Bayesian method for evolutionary rate estimation. [My Copy] Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2315-2321. by A. J. Bordner, R. Abagyan posted to bayesian catalytic_sites by chrn on 2005-08-05 23:26:47 as
	Functional annotation by identification of local surface similarities: a novel tool for structural genomics. [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2 August 2005) by Fabrizio Ferre, Gabriele Ausiello, Andreas Zanzoni, Manuela Helmer-Citterich posted to catalytic_sites by chrn on 2005-08-05 23:25:15 as
	Effective function annotation through catalytic residue conservation. [My Copy] Proc Natl Acad Sci U S A (21 July 2005) by Richard A A. George, Ruth V V. Spriggs, Gail J J. Bartlett, et al.Alex Gutteridge, Malcolm W W. Macarthur, Craig T T. Porter, Bissan Al-Lazikani, Janet M M. Thornton, Mark B B. Swindells posted to catalytic_sites by chrn on 2005-08-05 23:22:03 as along with 5 people and 1 group Einat alexg gbart tny bilab structural_bioinformatics
	Automated structure-based prediction of functional sites in proteins: applications to assessing the validity of inheriting protein function from homology in genome annotation and to protein docking. [My Copy] J Mol Biol, Vol. 311, No. 2. (10 August 2001), pp. 395-408. by P. Aloy, E. Querol, F. X. Aviles, M. J. Sternberg posted to catalytic_sites docking refs_catalytic by chrn on 2005-08-05 23:19:26 as along with 6 people ramiro2k kaarsinogen bicko chad_davis sriram_s cjeans
	Protein Function Prediction Using Local 3D Templates. [My Copy] J Mol Biol (11 July 2005) by Roman A A. Laskowski, James D D. Watson, Janet M M. Thornton posted to catalytic_sites prediction protein_struction by chrn on 2005-08-05 20:13:27 as along with 7 people mdimmic shadowman gbart MaggieYe siebertm yoonk jwm
	Network Analysis of Protein Structures Identifies Functional Residues [My Copy] Journal of Molecular Biology, Vol. 344, No. 4. (03 December 2004), pp. 1135-1146. by Gil Amitai, Arye Shemesh, Einat Sitbon, et al.Maxim Shklar, Dvir Netanely, Ilya Venger, Shmuel Pietrokovski posted to catalytic_sites by chrn on 2005-08-05 14:24:28 as along with 8 people and 1 group Diego_Prada vavi bicko Einat amitai sriram_s massivemayhem siebertm structural_bioinformatics
	Enzyme/Non-enzyme Discrimination and Prediction of Enzyme Active Site Location Using Charge-based Methods [My Copy] Journal of Molecular Biology, Vol. 340, No. 2. (2 July 2004), pp. 263-276. by Paul Bate, Jim Warwicker posted to catalytic_sites by chrn on 2005-08-05 14:23:06 as along with 1 person sriram_s
	Analysis of Catalytic Residues in Enzyme Active Sites [My Copy] Journal of Molecular Biology, Vol. 324, No. 1. (15 November 2002), pp. 105-121. by Gail J. Bartlett, Craig T. Porter, Neera Borkakoti, Janet M. Thornton posted to catalytic_sites by chrn on 2005-08-05 14:20:44 as along with 4 people barmak7282 pablocarb baaden tny
	ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures. [My Copy] Nucleic acids research, Vol. 33, No. Web Server issue. (1 July 2005) by Meytal Landau, Itay Mayrose, Yossi Rosenberg, et al.Fabian Glaser, Eric Martz, Tal Pupko, Nir Ben-Tal posted to catalytic_sites consurf evolution protein_structure pupko by chrn on 2005-08-05 14:05:04 as along with 8 people and 1 group pablocarb tomjad klexa shacko oteri ramiro2k sriram_s bicko Structural Biology Group TorVergata
	Prediction of catalytic residues in enzymes based on known tertiary structure, stability profile, and sequence conservation. [My Copy] J Mol Biol, Vol. 327, No. 5. (11 April 2003), pp. 1053-1064. by M. Ota, K. Kinoshita, K. Nishikawa posted to catalytic_sites refs_catalytic by chrn on 2005-06-18 23:55:57 as along with 1 person baaden
	Prediction of active sites for protein structures from computed chemical properties [My Copy] Bioinformatics, Vol. 21, No. suppl_1. (1 June 2005), pp. i258-265. by Jaeju Ko, Leonel F. Murga, Ying Wei, Mary J. Ondrechen posted to catalytic_sites by chrn on 2005-06-18 23:52:39 as along with 3 people barmak7282 ramiro2k sriram_s
	A novel approach to predict active sites of enzyme molecules [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 55, No. 1. (1 April 2004), pp. 77-82. by Kuo-Chen Chou, Yu-dong Cai posted to catalytic_sites by chrn on 2005-06-18 23:48:19 as along with 2 people barmak7282 nachtalp
	Using a library of structural templates to recognise catalytic sites and explore their evolution in homologous families. [My Copy] J Mol Biol, Vol. 347, No. 3. (1 April 2005), pp. 565-581. by J. W. Torrance, G. J. Bartlett, C. T. Porter, J. M. Thornton posted to catalytic_sites evolution by chrn on 2005-06-18 23:46:43 as along with 4 people and 1 group Einat alexg gbart jwm structural_bioinformatics

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refs_ox	236
chemotaxis	65
ch3	57
refs_snps	36
th_ibg	30
bacteria	24
ch2	23
bacterial	22
catalytic_sites	21
flagellar	20
motor	20
dna-protein	18
refs_catalytic	18
pattern	16
rhodobacter	16
sphaeroides	15
ch1	13
software	13
colony	12
taxis	12
dna-binding	11
snps	11
membrane	9
transcription	9
dna	8
levy_walk	8
protein	8
svm	8
biofilms	7
cell	7
evolution	7
pathway	7
simulation	7
site-specific_evolutionary_models	7
formation	6
hormones	6
prediction	6
receptor	6
refs_mp	6
adaptation	5
cellular	5
cluster	5
factor	5
machine-learning	5
pattern_formation	5
phototaxis	5
protein-dna	5
receptors	5
brain	4
chemoreceptor	4
classifier	4
databases	4
functional_sites	4
individual-based	4
protein_structure	4
random_walk	4
signal	4
signalling	4
toread	4
automata	3
bayesian	3
chemoreceptors	3
classification	3
cognition	3
cooperative	3
flagella	3
galvanotaxis	3
genome	3
lcsh	3
localisation	3
method	3
model	3
network	3
phylogenetic	3
random	3
reaction-diffusion	3
review	3
rhodobacter_sphaeroides	3
software_snps	3
transduction	3
virtual	3
3d	2
all-atom	2
binding	2
biochemical	2
biology	2
cellular_automata	2
chey	2
clustering	2
clusters	2
coli	2
communication	2
complex	2
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data	2
database	2
docking	2
dynamics	2
e-cell	2
elasticity	2
energy	2
escherichia	2
estrogen	2
factors	2
flagellar_motor	2
fokker-planck	2
free	2
helix-turn-helix	2
hmm	2
hpv	2
hydrodynamics	2
ibm	2
in	2
kernels	2
langevin	2
language	2
magnetotaxis	2
memory	2
muscle	2
mutation	2
neural	2
neurophysiology	2
nucleation	2
pdb	2
processes	2
sensitivity	2
sequence-specific	2
snps_refs	2
structure	2
system_biology	2
testosteron	2
thermotaxis	2
transmembrane	2
walk	2
acid	1
agar	1
agents	1
aging	1
airtaxis	1
amino	1
antidote	1
autocorrelation	1
biased	1
biological_motion	1
brownian	1
ca	1
cancer	1
catalytic	1
cath	1
cell-chemotaxis	1
ch10	1
ch4	1
ch5	1
channel	1
charcoal	1
chemical	1
chemokinesis	1
chermoreceptor	1
chimp	1
compucell	1
consurf	1
csa	1
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detection	1
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evolutionary	1
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g	1
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hole	1
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homstrad	1
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interactions	1
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joy	1
jump	1
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least_squares	1
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mathbio_textbook	1
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max_likelihood	1
meliloti	1
metabolism	1
migration	1
milk	1
mining	1
modelling	1
morphogenesis	1
morphotype	1
motif	1
mrbayes	1
multispecies	1
nanonpore	1
networks	1
neural_nets	1
neurolinguistics	1
non-specific	1
nootropic	1
nuclear	1
omim	1
organisation	1
osmotaxis	1
paml	1
papillomavirus	1
pathways	1
ph	1
pharmacokinetic	1
phosphorylation	1
phototaxs	1
phyml	1
poetry	1
polymorphisms	1
population	1
pore	1
power	1
power-law	1
process	1
processing	1
profile-based	1
proliferation	1
prostate	1
protein_folding	1
protein_function	1
proteins	1
protein_struction	1
proton	1
pupko	1
queries	1
query	1
radiation	1
ramp-support	1
reactions	1
recombination	1
refs_peptides	1
regulation	1
reproduction	1
residues	1
response	1
ritual	1
roc	1
rosetta	1
route-learning	1
scop	1
search	1
seasonal	1
self-engineering	1
self-ortanisation	1
self-wiring	1
sequence_structure	1
shannon	1
sift	1
silico	1
sinorhizobium	1
sites	1
site-specific	1
sleep	1
social	1
space	1
spatial	1
spatio	1
spectrum	1
speed	1
sperm	1
state	1
steady	1
step	1
stochastic	1
string	1
swiss-prot	1
system	1
systems	1
tanycytes	1
tar	1
temporal	1
terminated	1
thermophilic	1
tocheck	1
torque	1
tower	1
tracking	1
transfer	1
translocation	1
transport	1
transportdb	1
tumour	1
tunneling	1
two-state	1
ultraviolet	1
unzipping	1
useful	1
velocity	1
viji	1
vm	1
wag	1
web	1
weibull	1
word	1
zipf	1

chrn's catalytic_sites [21 articles] Export

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