chvlyl's library 20 articles Export

	Managing and analyzing next-generation sequence data. [My Copy] PLoS computational biology, Vol. 5, No. 6. (26 June 2009), e1000369. by Brent G. Richter, David P. Sexton posted to sequencing analyze by chvlyl on 2009-11-13 09:19:44 as along with 41 people and 3 groups Geknitics cthachuk hzoltan sameersoi hpaces gdv GeeSharpMinor idonaldson darian daveGerrard tharris Yanno inesdesantiago jcaddy agbiotec humburg Zephyrus daforerog stubrown GustavoLacerda torfinnnome natstreet polivares orzenil kongl guhjy druvus n00c leemond31 nuin operon jasontsai jmeppley rdiaz michaelbarton dswan reyez kshameer TRHvidsten djkt ppgardne BergmanLab Bioinformatics Journal picks
	Personalized copy number and segmental duplication maps using next-generation sequencing. [My Copy] Nature genetics, Vol. 41, No. 10. (30 October 2009), pp. 1061-1067. by Can Alkan, Jeffrey M. Kidd, Tomas Marques-Bonet, et al.Gozde Aksay, Francesca Antonacci, Fereydoun Hormozdiari, Jacob O. Kitzman, Carl Baker, Maika Malig, Onur Mutlu, S. Cenk Sahinalp, Richard A. Gibbs, Evan E. Eichler posted to sequencing number copy cnv by chvlyl on 2009-11-13 09:18:50 as along with 30 people and 1 group ongenetics leemachado daed gbenson n00c bozdagd dakelley sbmontgomery eshirdel merpublic shyamsg scmelton qayub natstreet fenghezi Annab djkt nuin xingxu jamesmorris rdiaz brant torfinnnome jandot pkonings danmaclean daforerog frohike rschulz gangcai Journal picks
	Human Genome Sequencing Using Unchained Base Reads on Self-Assembling DNA Nanoarrays. [My Copy] Science (New York, N.Y.) (5 November 2009), 1181498. by Radoje Drmanac, Andrew B. Sparks, Matthew J. Callow, et al.Aaron L. Halpern, Norman L. Burns, Bahram G. Kermani, Paolo Carnevali, Igor Nazarenko, Geoffrey B. Nilsen, George Yeung, Fredrik Dahl, Andres Fernandez, Bryan Staker, Krishna P. Pant, Jonathan Baccash, Adam P. Borcherding, Anushka Brownley, Ryan Cedeno, Linsu Chen, Dan Chernikoff, Alex Cheung, Razvan Chirita, Benjamin Curson, Jessica C. Ebert, Coleen R. Hacker, Robert Hartlage, Brian Hauser, Steve Huang, Yuan Jiang, Vitali Karpinchyk, Mark Koenig, Calvin Kong, Tom Landers, Catherine Le, Jia Liu, Celeste E. McBride, Matt Morenzoni, Robert E. Morey, Karl Mutch, Helena Perazich, Kimberly Perry, Brock A. Peters, Joe Peterson, Charit L. Pethiyagoda, Kaliprasad Pothuraju, Claudia Richter, Abraham M. Rosenbaum, Shaunak Roy, Jay Shafto, Uladzislau Sharanhovich, Karen W. Shannon, Conrad G. Sheppy, Michel Sun, Joseph V. Thakuria, Anne Tran, Dylan Vu, Alexander Wait W. Zaranek, Xiaodi Wu, Snezana Drmanac, Arnold R. Oliphant, William C. Banyai, Bruce Martin, Dennis G. Ballinger, George M. Church, Clifford A. Reid posted to sequencing nanoarrays by chvlyl on 2009-11-12 02:17:26 as along with 13 people and 1 group dakelley JonD qayub sandfire daforerog Peiyong JamesBarger natstreet heliopais rwst orzenil zufar frohike Journal picks
	Microdroplet-based PCR enrichment for large-scale targeted sequencing. [My Copy] Nature biotechnology, Vol. 27, No. 11. (01 November 2009), pp. 1025-1031. by Ryan Tewhey, Jason B. Warner, Masakazu Nakano, et al.Brian Libby, Martina Medkova, Patricia H. David, Steve K. Kotsopoulos, Michael L. Samuels, J. Brian Hutchison, Jonathan W. Larson, Eric J. Topol, Michael P. Weiner, Olivier Harismendy, Jeff Olson, Darren R. Link, Kelly A. Frazer posted to targeted sequencing by chvlyl on 2009-11-12 01:57:26 as along with 2 people and 2 groups torfinnnome qayub Reunions Biblio Spectro-IAB Journal picks
	The challenges of sequencing by synthesis [My Copy] Nature Biotechnology, Vol. 27, No. 11. (06 November 2009), pp. 1013-1023. by Carl W. Fuller, Lyle R. Middendorf, Steven A. Benner, et al.George M. Church, Timothy Harris, Xiaohua Huang, Stevan B. Jovanovich, John R. Nelson, Jeffery A. Schloss, David C. Schwartz, Dmitri V. Vezenov posted to sequencing by chvlyl on 2009-11-12 01:56:44 as along with 5 people viren4388 heliopais JonD brianb seb1
	An oestrogen-receptor-alpha-bound human chromatin interactome. [My Copy] Nature, Vol. 462, No. 7269. (5 November 2009), pp. 58-64. by Melissa J. Fullwood, Mei Hui H. Liu, You Fu F. Pan, et al.Jun Liu, Han Xu, Yusoff Bin B. Mohamed, Yuriy L. Orlov, Stoyan Velkov, Andrea Ho, Poh Huay H. Mei, Elaine G. Chew, Phillips Yao Hui Y. Huang, Willem-Jan J. Welboren, Yuyuan Han, Hong Sain S. Ooi, Pramila N. Ariyaratne, Vinsensius B. Vega, Yanquan Luo, Peck Yean Y. Tan, Pei Ye Y. Choy, Senali Abayratna D. Wansa, Bing Zhao, Kar Sian S. Lim, Shi Chi C. Leow, Jit Sin S. Yow, Roy Joseph, Haixia Li, Kartiki V. Desai, Jane S. Thomsen, Yew Kok K. Lee, R. Krishna Murthy Karuturi, Thoreau Herve, Guillaume Bourque, Hendrik G. Stunnenberg, Xiaoan Ruan, Valere Cacheux-Rataboul, Wing-Kin K. Sung, Edison T. Liu, Chia-Lin L. Wei, Edwin Cheung, Yijun Ruan posted to interactome dna chromatin by chvlyl on 2009-11-12 01:51:58 as along with 4 people mkiyer fenghezi gdb TRHvidsten
	An Optimization Framework for Unsupervised Identification of Rare Copy Number Variation from SNP Array Data [My Copy] Genome Biology, Vol. 10, No. 10. (22 October 2009), R119. by Gokhan Yavas, Mehmet Koyuturk, Meral Ozsoyoglu, Meetha Gould, Thomas LaFramboise posted to variants snp number copy cnv by chvlyl on 2009-11-12 01:50:08 as along with 1 person merpublic
	The potential and challenges of nanopore sequencing [My Copy] Nature Biotechnology, Vol. 26, No. 10. (09 October 2008), pp. 1146-1153. by Daniel Branton, David W. Deamer, Andre Marziali, et al.Hagan Bayley, Steven A. Benner, Thomas Butler, Massimiliano Di Ventra, Slaven Garaj, Andrew Hibbs, Xiaohua Huang, Stevan B. Jovanovich, Predrag S. Krstic, Stuart Lindsay, Xinsheng S. Ling, Carlos H. Mastrangelo, Amit Meller, John S. Oliver, Yuriy V. Pershin, J. Michael Ramsey, Robert Riehn, Gautam V. Soni, Vincent Tabard-Cossa, Meni Wanunu, Matthew Wiggin, Jeffery A. Schloss posted to sequencing nanopore by chvlyl on 2009-11-07 06:47:54 as along with 10 people seb1 inesdesantiago heliopais guhjy idoerg jbhiatt sharpstones alexknight reyez GeeSharpMinor
	An integrative approach to reveal driver gene fusions from paired-end sequencing data in cancer [My Copy] Nat Biotech, Vol. 27, No. 11. (01 November 2009), pp. 1005-1011. by Xiao-Song Wang, John R. Prensner, Guoan Chen, et al.Qi Cao, Bo Han, Saravana M. Dhanasekaran, Rakesh Ponnala, Xuhong Cao, Sooryanarayana Varambally, Dafydd G. Thomas, Thomas J. Giordano, David G. Beer, Nallasivam Palanisamy, Maureen A. Sartor, Gilbert S. Omenn, Arul M. Chinnaiyan posted to sequencing gene fusions cancer by chvlyl on 2009-11-02 12:33:38 as along with 3 people and 1 group torfinnnome qayub frohike Journal picks
	Generic eukaryotic core promoter prediction using structural features of DNA [My Copy] Genome Research, Vol. 18, No. 2. (20 February 2008), pp. 310-323. by Thomas Abeel, Yvan Saeys, Eric Bonnet, Pierre RouzÃ©, Yves Van de Peer posted to promoter prediction core by chvlyl on 2009-11-02 07:19:32 as along with 8 people timflutre hagechouchin443 rsaito tonamswish cjeans cabbagezs maximilianh idonaldson
	Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome [My Copy] Science, Vol. 326, No. 5950. (9 October 2009), pp. 289-293. by Erez Lieberman-Aiden, Nynke L. van Berkum, Louise Williams, et al.Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R. Lajoie, Peter J. Sabo, Michael O. Dorschner, Richard Sandstrom, Bradley Bernstein, M. A. Bender, Mark Groudine, Andreas Gnirke, John Stamatoyannopoulos, Leonid A. Mirny, Eric S. Lander, Job Dekker posted to sequencing by chvlyl on 2009-11-02 07:00:49 as along with 32 people and 3 groups vingron pmcarlton alhufton psique qayub TorstenWaldminghaus kintoki Garamonfok inesdesantiago NickFurnham DrRichardBadge roys rdiaz daveGerrard colinveal frohike nrk891 zwang timflutre afenley kshameer polivares mgatmedsci diamantis flbarroso jdoconnell fenghezi daforerog bpcusack gjuggler gdb gbloeb JLab BergmanLab Journal picks
	Origins and functional impact of copy number variation in the human genome [My Copy] Nature, Vol. advance online publication (07 October 2009) by Donald F. Conrad, Dalila Pinto, Richard Redon, et al.Lars Feuk, Omer Gokcumen, Yujun Zhang, Jan Aerts, T. Daniel Andrews, Chris Barnes, Peter Campbell, Tomas Fitzgerald, Min Hu, Chun H. Ihm, Kati Kristiansson, Daniel G. MacArthur, Jeffrey R. MacDonald, Ifejinelo Onyiah, Andy W. Pang, Sam Robson, Kathy Stirrups, Armand Valsesia, Klaudia Walter, John Wei, Chris Tyler-Smith, Nigel P. Carter, Charles Lee, Stephen W. Scherer, Matthew E. Hurles posted to variation sequencing number copy cnv by chvlyl on 2009-11-02 06:57:51 as along with 20 people and 1 group Zephyrus gthorisson vplagnol biovils psique daed daforerog zufar jessopher DrRichardBadge operon colinveal frohike sf11 sameersoi polivares dswan qayub bpcusack rdiaz Journal picks
	Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution. [My Copy] Nature, Vol. 461, No. 7265. (8 October 2009), pp. 809-813. by Sohrab P. Shah, Ryan D. Morin, Jaswinder Khattra, et al.Leah Prentice, Trevor Pugh, Angela Burleigh, Allen Delaney, Karen Gelmon, Ryan Guliany, Janine Senz, Christian Steidl, Robert A. Holt, Steven Jones, Mark Sun, Gillian Leung, Richard Moore, Tesa Severson, Greg A. Taylor, Andrew E. Teschendorff, Kane Tse, Gulisa Turashvili, Richard Varhol, René L. Warren, Peter Watson, Yongjun Zhao, Carlos Caldas, David Huntsman, Martin Hirst, Marco A. Marra, Samuel Aparicio posted to snp sequencing cancer breast by chvlyl on 2009-11-02 06:55:07 as along with 13 people and 2 groups misonneh pst jwfoley stubrown giovenko frohike brianb Zephyrus jsuchit mkiyer torfinnnome merpublic djkt Chinnaiyan Lab Journal picks
	In vivo RNAi screening identifies regulators of actin dynamics as key determinants of lymphoma progression [My Copy] Nature Genetics, Vol. 41, No. 10. (27 September 2009), pp. 1133-1137. by Corbin E. Meacham, Emily E. Ho, Esther Dubrovsky, Frank B. Gertler, Michael T. Hemann posted to screening rnai by chvlyl on 2009-11-02 06:52:26 as
	Sense from sequence reads: methods for alignment and assembly [My Copy] Nat Meth, Vol. 6, No. 11s. (15 November 2009), pp. S6-S12. by Paul Flicek, Ewan Birney posted to sequencing mapping alignment by chvlyl on 2009-11-02 01:32:12 as along with 13 people and 1 group pst owenlancaster robertrentzsch oannes74 Thaverkamp jasontsai natstreet seb1 druvus GeeSharpMinor n00c venancio desany Orengo Group Journal Picks
	Computation for ChIP-seq and RNA-seq studies. [My Copy] Nature methods, Vol. 6, No. 11 Suppl. (15 November 2009), pp. S22-S32. by Shirley Pepke, Barbara Wold, Ali Mortazavi posted to rna-seq review chip-seq by chvlyl on 2009-11-01 10:42:24 as along with 23 people and 2 groups urgi Jporci pst epigenetics timflutre molnet-mna Vincent_Rouilly guhjy cajunsushi mpizbioinfo stubrown hzoltan robertrentzsch xingxu oannes74 tonamswish inesdesantiago Baschl polivares jwfoley druvus GeeSharpMinor heliopais molnet-macs Orengo Group Journal Picks
	Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing. [My Copy] Nature genetics, Vol. 40, No. 6. (27 June 2008), pp. 722-729. by Peter J. Campbell, Philip J. Stephens, Erin D. Pleasance, et al.Sarah O'Meara, Heng Li, Thomas Santarius, Lucy A. Stebbings, Catherine Leroy, Sarah Edkins, Claire Hardy, Jon W. Teague, Andrew Menzies, Ian Goodhead, Daniel J. Turner, Christopher M. Clee, Michael A. Quail, Antony Cox, Clive Brown, Richard Durbin, Matthew E. Hurles, Paul A. Edwards, Graham R. Bignell, Michael R. Stratton, P. Andrew Futreal posted to sequencing cancer by chvlyl on 2009-11-01 07:39:20 as along with 12 people dakelley APRegier myzhang jessopher frohike smiddha xingxu daed matthewsuderman jfr caseybrown chrisamiller
	Targeted capture and massively parallel sequencing of 12 human exomes. [My Copy] Nature, Vol. 461, No. 7261. (10 September 2009), pp. 272-276. by Sarah B. Ng, Emily H. Turner, Peggy D. Robertson, et al.Steven D. Flygare, Abigail W. Bigham, Choli Lee, Tristan Shaffer, Michelle Wong, Arindam Bhattacharjee, Evan E. Eichler, Michael Bamshad, Deborah A. Nickerson, Jay Shendure posted to sequencing exomes by chvlyl on 2009-11-01 07:29:42 as along with 23 people and 1 group seb1 hzoltan liqbbi ongenetics psique fenghezi n00c dswan jmanning2k torfinnnome GeeSharpMinor pkonings neils djkt daforerog PabloMarin stubrown danmaclean xingxu vplagnol druvus jandot frohike Journal picks
	TagDust--a program to eliminate artifacts from next generation sequencing data [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2839-2840. by Timo Lassmann, Yoshihide Hayashizaki, Carsten O. Daub posted to sequencing map by chvlyl on 2009-10-30 07:37:59 as along with 20 people and 1 group orzenil hzoltan operon kshameer djkt rtogawa seb1 idonaldson nuin debasis jgill GeeSharpMinor sotacam torfinnnome walshtp heliopais jandot n00c rschulz druvus Journal picks
	Genetic diagnosis by whole exome capture and massively parallel DNA sequencing. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 45. (10 November 2009), pp. 19096-19101. by Murim Choi, Ute I. Scholl, Weizhen Ji, et al.Tiewen Liu, Irina R. Tikhonova, Paul Zumbo, Ahmet Nayir, Ayşin Bakkaloğlu, Seza Ozen, Sami Sanjad, Carol Nelson-Williams, Anita Farhi, Shrikant Mane, Richard P. Lifton posted to sequencing exome by chvlyl on 2009-10-30 07:00:41 as along with 5 people daforerog liqbbi pst Peiyong giovanni

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sequencing	15
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cnv	3
copy	3
number	3
snp	2
alignment	1
analyze	1
breast	1
chip-seq	1
chromatin	1
core	1
dna	1
exome	1
exomes	1
fusions	1
gene	1
interactome	1
map	1
mapping	1
nanoarrays	1
nanopore	1
prediction	1
promoter	1
review	1
rnai	1
rna-seq	1
screening	1
targeted	1
variants	1
variation	1

chvlyl's library 20 articles Export

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